GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 7 - 78 | 8.8e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 167 |
| Acc36I | ACCTGC | 1 cut(s) | 851 |
| AccI | GTMKAC | 1 cut(s) | 265 |
| AciI | CCGC | 1 cut(s) | 761 |
| AcoI | YGGCCR | 1 cut(s) | 840 |
| AfaI | GTAC | 1 cut(s) | 435 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 824 |
| AflII | CTTAAG | 1 cut(s) | 203 |
| AgsI | TTSAA | 2 cut(s) | 77, 411 |
| AjnI | CCWGG | 1 cut(s) | 532 |
| AluBI | AGCT | 8 cut(s) | 62, 152, 173, 221, 299, 335, 394, 422 |
| AluI | AGCT | 8 cut(s) | 62, 152, 173, 221, 299, 335, 394, 422 |
| Alw21I | GWGCWC | 2 cut(s) | 175, 190 |
| Alw26I | GTCTC | 3 cut(s) | 29, 137, 869 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 338 |
| AoxI | GGCC | 1 cut(s) | 840 |
| ApeKI | GCWGC | 7 cut(s) | 59, 149, 221, 299, 335, 338, 476 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 807 |
| AsuNHI | GCTAGC | 1 cut(s) | 802 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 417, 450 |
| BalI | TGGCCA | 1 cut(s) | 842 |
| BanII | GRGCYC | 1 cut(s) | 175 |
| Bbv12I | GWGCWC | 2 cut(s) | 175, 190 |
| BbvI | GCAGC | 7 cut(s) | 71, 161, 208, 286, 322, 325, 463 |
| BccI | CCATC | 3 cut(s) | 145, 632, 887 |
| BciT130I | CCWGG | 1 cut(s) | 534 |
| BcoDI | GTCTC | 3 cut(s) | 29, 137, 869 |
| BfaI | CTAG | 4 cut(s) | 296, 378, 666, 803 |
| BfrI | CTTAAG | 1 cut(s) | 203 |
| BfuAI | ACCTGC | 1 cut(s) | 851 |
| BisI | GCNGC | 8 cut(s) | 60, 150, 222, 300, 336, 339, 477, 762 |
| BlsI | GCNGC | 8 cut(s) | 61, 151, 223, 301, 337, 340, 478, 763 |
| Bme1390I | CCNGG | 1 cut(s) | 534 |
| BmrFI | CCNGG | 1 cut(s) | 534 |
| BmsI | GCATC | 1 cut(s) | 58 |
| BmtI | GCTAGC | 1 cut(s) | 806 |
| BpuEI | CTTGAG | 2 cut(s) | 303, 414 |
| BsaI | GGTCTC | 2 cut(s) | 137, 869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 172, 202 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 824 |
| Bse1I | ACTGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 2 cut(s) | 247, 727 |
| BseBI | CCWGG | 1 cut(s) | 534 |
| BseGI | GGATG | 2 cut(s) | 620, 624 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 824 |
| BseMI | GCAATG | 2 cut(s) | 247, 727 |
| BseMII | CTCAG | 3 cut(s) | 36, 437, 512 |
| BseNI | ACTGG | 1 cut(s) | 398 |
| BseXI | GCAGC | 7 cut(s) | 71, 161, 208, 286, 322, 325, 463 |
| BshFI | GGCC | 1 cut(s) | 842 |
| BsiHKAI | GWGCWC | 2 cut(s) | 175, 190 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 824 |
| BsmAI | GTCTC | 3 cut(s) | 29, 137, 869 |
| BsmI | GAATGC | 1 cut(s) | 255 |
| BsnI | GGCC | 1 cut(s) | 842 |
| Bso31I | GGTCTC | 2 cut(s) | 137, 869 |
| Bsp1286I | GDGCHC | 2 cut(s) | 175, 190 |
| BspACI | CCGC | 1 cut(s) | 761 |
| BspANI | GGCC | 1 cut(s) | 842 |
| BspCNI | CTCAG | 3 cut(s) | 35, 436, 511 |
| BspMI | ACCTGC | 1 cut(s) | 851 |
| BspOI | GCTAGC | 1 cut(s) | 806 |
| BspTI | CTTAAG | 1 cut(s) | 203 |
| BspTNI | GGTCTC | 2 cut(s) | 137, 869 |
| BsrDI | GCAATG | 2 cut(s) | 247, 727 |
| BsrI | ACTGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 1 cut(s) | 534 |
| Bst4CI | ACNGT | 5 cut(s) | 82, 121, 163, 359, 454 |
| Bst6I | CTCTTC | 1 cut(s) | 872 |
| BstAFI | CTTAAG | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 4 cut(s) | 282, 420, 558, 804 |
| BstDEI | CTNAG | 3 cut(s) | 22, 423, 498 |
| BstF5I | GGATG | 2 cut(s) | 620, 624 |
| BstMAI | GTCTC | 3 cut(s) | 29, 137, 869 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 281, 308, 332 |
| BstNI | CCWGG | 1 cut(s) | 534 |
| BstNSI | RCATGY | 2 cut(s) | 556, 860 |
| BstSCI | CCNGG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 7 cut(s) | 71, 161, 208, 286, 322, 325, 463 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 778 |
| BsuRI | GGCC | 1 cut(s) | 842 |
| BtsCI | GGATG | 2 cut(s) | 620, 624 |
| BtsI | GCAGTG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 1 cut(s) | 270 |
| BveI | ACCTGC | 1 cut(s) | 851 |
| Cac8I | GCNNGC | 4 cut(s) | 282, 420, 558, 804 |
| CaiI | CAGNNNCTG | 1 cut(s) | 338 |
| CsiI | ACCWGGT | 1 cut(s) | 532 |
| Csp6I | GTAC | 1 cut(s) | 434 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 691, 718, 726, 753 |
| CviAII | CATG | 5 cut(s) | 351, 415, 553, 604, 857 |
| CviQI | GTAC | 1 cut(s) | 434 |
| DdeI | CTNAG | 3 cut(s) | 22, 423, 498 |
| EaeI | YGGCCR | 1 cut(s) | 840 |
| Eam1104I | CTCTTC | 1 cut(s) | 872 |
| EarI | CTCTTC | 1 cut(s) | 872 |
| Ecl136II | GAGCTC | 1 cut(s) | 173 |
| Eco24I | GRGCYC | 1 cut(s) | 175 |
| Eco31I | GGTCTC | 2 cut(s) | 137, 869 |
| Eco53kI | GAGCTC | 1 cut(s) | 173 |
| EcoICRI | GAGCTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 532 |
| EcoT38I | GRGCYC | 1 cut(s) | 175 |
| FaeI | CATG | 5 cut(s) | 354, 418, 556, 607, 860 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FatI | CATG | 5 cut(s) | 350, 414, 552, 603, 856 |
| FauNDI | CATATG | 1 cut(s) | 610 |
| FblI | GTMKAC | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 8 cut(s) | 60, 150, 222, 300, 336, 339, 477, 762 |
| FokI | GGATG | 2 cut(s) | 607, 611 |
| FriOI | GRGCYC | 1 cut(s) | 175 |
| Fsp4HI | GCNGC | 8 cut(s) | 60, 150, 222, 300, 336, 339, 477, 762 |
| FspBI | CTAG | 4 cut(s) | 296, 378, 666, 803 |
| GluI | GCNGC | 8 cut(s) | 60, 150, 222, 300, 336, 339, 477, 762 |
| HaeIII | GGCC | 1 cut(s) | 842 |
| Hin1II | CATG | 5 cut(s) | 354, 418, 556, 607, 860 |
| HincII | GTYRAC | 2 cut(s) | 200, 383 |
| HindII | GTYRAC | 2 cut(s) | 200, 383 |
| HinfI | GANTC | 6 cut(s) | 196, 208, 262, 427, 445, 782 |
| HphI | GGTGA | 2 cut(s) | 172, 807 |
| Hpy166II | GTNNAC | 5 cut(s) | 200, 266, 383, 618, 650 |
| Hpy188I | TCNGA | 5 cut(s) | 25, 142, 261, 426, 501 |
| Hpy188III | TCNNGA | 1 cut(s) | 786 |
| Hpy8I | GTNNAC | 5 cut(s) | 200, 266, 383, 618, 650 |
| HpyAV | CCTTC | 3 cut(s) | 471, 639, 735 |
| HpyCH4III | ACNGT | 5 cut(s) | 82, 121, 163, 359, 454 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 281, 308, 332 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 423, 498 |
| Hsp92II | CATG | 5 cut(s) | 354, 418, 556, 607, 860 |
| LmnI | GCTCC | 2 cut(s) | 193, 523 |
| Lsp1109I | GCAGC | 7 cut(s) | 71, 161, 208, 286, 322, 325, 463 |
| LweI | GCATC | 1 cut(s) | 58 |
| MabI | ACCWGGT | 1 cut(s) | 532 |
| MaeI | CTAG | 4 cut(s) | 296, 378, 666, 803 |
| MaeIII | GTNAC | 4 cut(s) | 115, 488, 725, 795 |
| MboII | GAAGA | 2 cut(s) | 116, 859 |
| MhlI | GDGCHC | 2 cut(s) | 175, 190 |
| MlsI | TGGCCA | 1 cut(s) | 842 |
| MluCI | AATT | 4 cut(s) | 176, 366, 747, 807 |
| MluNI | TGGCCA | 1 cut(s) | 842 |
| MlyI | GAGTC | 4 cut(s) | 202, 205, 271, 421 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 5 cut(s) | 314, 385, 553, 677, 710 |
| Mox20I | TGGCCA | 1 cut(s) | 842 |
| MscI | TGGCCA | 1 cut(s) | 842 |
| MseI | TTAA | 5 cut(s) | 126, 156, 204, 216, 767 |
| MslI | CAYNNNNRTG | 1 cut(s) | 275 |
| Msp20I | TGGCCA | 1 cut(s) | 842 |
| MspA1I | CMGCKG | 1 cut(s) | 335 |
| MspCI | CTTAAG | 1 cut(s) | 203 |
| MspR9I | CCNGG | 1 cut(s) | 534 |
| Mva1269I | GAATGC | 1 cut(s) | 255 |
| MvaI | CCWGG | 1 cut(s) | 534 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 281, 308, 332 |
| NdeI | CATATG | 1 cut(s) | 610 |
| NheI | GCTAGC | 1 cut(s) | 802 |
| NlaIII | CATG | 5 cut(s) | 354, 418, 556, 607, 860 |
| NspI | RCATGY | 2 cut(s) | 556, 860 |
| PctI | GAATGC | 1 cut(s) | 255 |
| PfeI | GAWTC | 2 cut(s) | 445, 782 |
| PkrI | GCNGC | 8 cut(s) | 61, 151, 223, 301, 337, 340, 478, 763 |
| PleI | GAGTC | 4 cut(s) | 202, 204, 270, 421 |
| PpsI | GAGTC | 4 cut(s) | 202, 204, 270, 421 |
| PsiI | TTATAA | 1 cut(s) | 167 |
| Psp124BI | GAGCTC | 1 cut(s) | 175 |
| Psp6I | CCWGG | 1 cut(s) | 532 |
| PspGI | CCWGG | 1 cut(s) | 532 |
| PstNI | CAGNNNCTG | 1 cut(s) | 338 |
| PvuII | CAGCTG | 1 cut(s) | 335 |
| RsaI | GTAC | 1 cut(s) | 435 |
| RsaNI | GTAC | 1 cut(s) | 434 |
| RseI | CAYNNNNRTG | 1 cut(s) | 275 |
| SacI | GAGCTC | 1 cut(s) | 175 |
| SaqAI | TTAA | 5 cut(s) | 126, 156, 204, 216, 767 |
| SatI | GCNGC | 8 cut(s) | 60, 150, 222, 300, 336, 339, 477, 762 |
| SchI | GAGTC | 4 cut(s) | 202, 205, 271, 421 |
| ScrFI | CCNGG | 1 cut(s) | 534 |
| SduI | GDGCHC | 2 cut(s) | 175, 190 |
| SexAI | ACCWGGT | 1 cut(s) | 532 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 275 |
| SmlI | CTYRAG | 3 cut(s) | 203, 318, 429 |
| SmoI | CTYRAG | 3 cut(s) | 203, 318, 429 |
| Sse9I | AATT | 4 cut(s) | 176, 366, 747, 807 |
| SsiI | CCGC | 1 cut(s) | 761 |
| SspMI | CTAG | 4 cut(s) | 296, 378, 666, 803 |
| SstI | GAGCTC | 1 cut(s) | 175 |
| StyD4I | CCNGG | 1 cut(s) | 532 |
| TaaI | ACNGT | 5 cut(s) | 82, 121, 163, 359, 454 |
| TaqI | TCGA | 1 cut(s) | 682 |
| TasI | AATT | 4 cut(s) | 176, 366, 747, 807 |
| TauI | GCSGC | 1 cut(s) | 764 |
| TfiI | GAWTC | 2 cut(s) | 445, 782 |
| Tru1I | TTAA | 5 cut(s) | 126, 156, 204, 216, 767 |
| Tru9I | TTAA | 5 cut(s) | 126, 156, 204, 216, 767 |
| TscAI | CASTG | 1 cut(s) | 277 |
| TseI | GCWGC | 7 cut(s) | 59, 149, 221, 299, 335, 338, 476 |
| TspDTI | ATGAA | 3 cut(s) | 117, 258, 621 |
| TspRI | CASTG | 1 cut(s) | 277 |
| Vha464I | CTTAAG | 1 cut(s) | 203 |
| XceI | RCATGY | 2 cut(s) | 556, 860 |
| XmiI | GTMKAC | 1 cut(s) | 265 |
| XspI | CTAG | 4 cut(s) | 296, 378, 666, 803 |