gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 123 - 196 | 4.8e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 334 |
| AcoI | YGGCCR | 1 cut(s) | 646 |
| AcvI | CACGTG | 1 cut(s) | 518 |
| AfaI | GTAC | 2 cut(s) | 352, 598 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 99 |
| AgsI | TTSAA | 2 cut(s) | 18, 548 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 148, 180 |
| AluBI | AGCT | 2 cut(s) | 277, 612 |
| AluI | AGCT | 2 cut(s) | 277, 612 |
| Alw26I | GTCTC | 2 cut(s) | 192, 485 |
| Ama87I | CYCGRG | 1 cut(s) | 318 |
| AoxI | GGCC | 3 cut(s) | 624, 646, 658 |
| ApeKI | GCWGC | 1 cut(s) | 688 |
| AseI | ATTAAT | 1 cut(s) | 396 |
| AspS9I | GGNCC | 2 cut(s) | 479, 625 |
| AvaI | CYCGRG | 1 cut(s) | 318 |
| AvaII | GGWCC | 1 cut(s) | 479 |
| BbrPI | CACGTG | 1 cut(s) | 518 |
| BbvCI | CCTCAGC | 1 cut(s) | 37 |
| BbvI | GCAGC | 1 cut(s) | 700 |
| BccI | CCATC | 5 cut(s) | 149, 221, 410, 536, 571 |
| BceAI | ACGGC | 2 cut(s) | 633, 639 |
| BciVI | GTATCC | 1 cut(s) | 136 |
| BclI | TGATCA | 1 cut(s) | 583 |
| BcoDI | GTCTC | 2 cut(s) | 192, 485 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BfuI | GTATCC | 1 cut(s) | 136 |
| BisI | GCNGC | 1 cut(s) | 689 |
| BlsI | GCNGC | 1 cut(s) | 690 |
| Bme18I | GGWCC | 1 cut(s) | 479 |
| BmeT110I | CYCGRG | 1 cut(s) | 318 |
| BmgT120I | GGNCC | 2 cut(s) | 479, 625 |
| BmsI | GCATC | 2 cut(s) | 89, 381 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 493, 525 |
| Bpu10I | CCTNAGC | 1 cut(s) | 37 |
| BpuEI | CTTGAG | 2 cut(s) | 182, 495 |
| BsaAI | YACGTR | 2 cut(s) | 518, 534 |
| BsaBI | GATNNNNATC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 1 cut(s) | 485 |
| BsaJI | CCNNGG | 3 cut(s) | 358, 649, 661 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 99 |
| Bse1I | ACTGG | 1 cut(s) | 12 |
| Bse8I | GATNNNNATC | 1 cut(s) | 588 |
| BseDI | CCNNGG | 3 cut(s) | 358, 649, 661 |
| BseGI | GGATG | 3 cut(s) | 232, 430, 582 |
| BseJI | GATNNNNATC | 1 cut(s) | 588 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 99 |
| BseMII | CTCAG | 5 cut(s) | 51, 194, 203, 382, 622 |
| BseNI | ACTGG | 1 cut(s) | 12 |
| BseRI | GAGGAG | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 700 |
| BseYI | CCCAGC | 1 cut(s) | 98 |
| BshFI | GGCC | 3 cut(s) | 626, 648, 660 |
| BsiHKCI | CYCGRG | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 99 |
| BsmAI | GTCTC | 2 cut(s) | 192, 485 |
| BsnI | GGCC | 3 cut(s) | 626, 648, 660 |
| Bso31I | GGTCTC | 1 cut(s) | 485 |
| BsoBI | CYCGRG | 1 cut(s) | 318 |
| Bsp143I | GATC | 3 cut(s) | 340, 583, 604 |
| BspACI | CCGC | 1 cut(s) | 334 |
| BspANI | GGCC | 3 cut(s) | 626, 648, 660 |
| BspCNI | CTCAG | 5 cut(s) | 50, 193, 202, 381, 621 |
| BspTNI | GGTCTC | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 12 |
| BssECI | CCNNGG | 3 cut(s) | 358, 649, 661 |
| BssMI | GATC | 3 cut(s) | 340, 583, 604 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 87, 289, 499 |
| BstBAI | YACGTR | 2 cut(s) | 518, 534 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 5 cut(s) | 37, 180, 189, 368, 608 |
| BstDSI | CCRYGG | 2 cut(s) | 358, 649 |
| BstF5I | GGATG | 3 cut(s) | 232, 430, 582 |
| BstKTI | GATC | 3 cut(s) | 343, 586, 607 |
| BstMAI | GTCTC | 2 cut(s) | 192, 485 |
| BstMBI | GATC | 3 cut(s) | 340, 583, 604 |
| BstV1I | GCAGC | 1 cut(s) | 700 |
| BsuI | GTATCC | 1 cut(s) | 136 |
| BsuRI | GGCC | 3 cut(s) | 626, 648, 660 |
| BtgI | CCRYGG | 2 cut(s) | 358, 649 |
| BtgZI | GCGATG | 1 cut(s) | 388 |
| BtsCI | GGATG | 3 cut(s) | 232, 430, 582 |
| BtsI | GCAGTG | 2 cut(s) | 127, 343 |
| BtsIMutI | CAGTG | 5 cut(s) | 67, 127, 343, 504, 709 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| Cfr13I | GGNCC | 2 cut(s) | 479, 625 |
| Csp6I | GTAC | 2 cut(s) | 351, 597 |
| CviAII | CATG | 2 cut(s) | 214, 249 |
| CviQI | GTAC | 2 cut(s) | 351, 597 |
| DdeI | CTNAG | 5 cut(s) | 37, 180, 189, 368, 608 |
| DpnI | GATC | 3 cut(s) | 342, 585, 606 |
| DpnII | GATC | 3 cut(s) | 340, 583, 604 |
| EaeI | YGGCCR | 1 cut(s) | 646 |
| Eco31I | GGTCTC | 1 cut(s) | 485 |
| Eco47I | GGWCC | 1 cut(s) | 479 |
| Eco72I | CACGTG | 1 cut(s) | 518 |
| Eco88I | CYCGRG | 1 cut(s) | 318 |
| EcoT22I | ATGCAT | 1 cut(s) | 82 |
| FaeI | CATG | 2 cut(s) | 217, 252 |
| FaiI | YATR | 9 cut(s) | 172, 215, 250, 303, 437, 467, 489, 537, 633 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 585, 617 |
| FatI | CATG | 2 cut(s) | 213, 248 |
| FbaI | TGATCA | 1 cut(s) | 583 |
| Fnu4HI | GCNGC | 1 cut(s) | 689 |
| FokI | GGATG | 3 cut(s) | 239, 417, 589 |
| Fsp4HI | GCNGC | 1 cut(s) | 689 |
| FspBI | CTAG | 1 cut(s) | 117 |
| GluI | GCNGC | 1 cut(s) | 689 |
| GsaI | CCCAGC | 1 cut(s) | 102 |
| HaeIII | GGCC | 3 cut(s) | 626, 648, 660 |
| Hin1II | CATG | 2 cut(s) | 217, 252 |
| HinfI | GANTC | 2 cut(s) | 193, 328 |
| Hpy188I | TCNGA | 5 cut(s) | 183, 192, 283, 379, 681 |
| Hpy188III | TCNNGA | 2 cut(s) | 320, 602 |
| Hpy99I | CGWCG | 1 cut(s) | 479 |
| HpyAV | CCTTC | 3 cut(s) | 263, 356, 567 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 87, 289, 499 |
| HpyCH4IV | ACGT | 3 cut(s) | 474, 517, 533 |
| HpyCH4V | TGCA | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 5 cut(s) | 37, 180, 189, 368, 608 |
| HpySE526I | ACGT | 3 cut(s) | 474, 517, 533 |
| Hsp92II | CATG | 2 cut(s) | 217, 252 |
| Ksp22I | TGATCA | 1 cut(s) | 583 |
| Kzo9I | GATC | 3 cut(s) | 340, 583, 604 |
| LpnPI | CCDG | 5 cut(s) | 25, 84, 130, 411, 630 |
| Lsp1109I | GCAGC | 1 cut(s) | 700 |
| LweI | GCATC | 2 cut(s) | 89, 381 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeII | ACGT | 3 cut(s) | 474, 517, 533 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 3 cut(s) | 342, 585, 606 |
| MboI | GATC | 3 cut(s) | 340, 583, 604 |
| MboII | GAAGA | 1 cut(s) | 458 |
| MluCI | AATT | 3 cut(s) | 307, 397, 640 |
| MlyI | GAGTC | 1 cut(s) | 322 |
| Mph1103I | ATGCAT | 1 cut(s) | 82 |
| MseI | TTAA | 1 cut(s) | 396 |
| MslI | CAYNNNNRTG | 1 cut(s) | 704 |
| NdeII | GATC | 3 cut(s) | 340, 583, 604 |
| NlaIII | CATG | 2 cut(s) | 217, 252 |
| NmeAIII | GCCGAG | 1 cut(s) | 686 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| NsiI | ATGCAT | 1 cut(s) | 82 |
| PaeR7I | CTCGAG | 1 cut(s) | 318 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 355 |
| PfeI | GAWTC | 1 cut(s) | 193 |
| PflFI | GACNNNGTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 690 |
| PleI | GAGTC | 1 cut(s) | 322 |
| PmaCI | CACGTG | 1 cut(s) | 518 |
| PmlI | CACGTG | 1 cut(s) | 518 |
| PpsI | GAGTC | 1 cut(s) | 322 |
| Ppu21I | YACGTR | 2 cut(s) | 518, 534 |
| PshBI | ATTAAT | 1 cut(s) | 396 |
| PspCI | CACGTG | 1 cut(s) | 518 |
| PspFI | CCCAGC | 1 cut(s) | 98 |
| PspPI | GGNCC | 2 cut(s) | 479, 625 |
| PsyI | GACNNNGTC | 1 cut(s) | 287 |
| RsaI | GTAC | 2 cut(s) | 352, 598 |
| RsaNI | GTAC | 2 cut(s) | 351, 597 |
| RseI | CAYNNNNRTG | 1 cut(s) | 704 |
| SaqAI | TTAA | 1 cut(s) | 396 |
| SatI | GCNGC | 1 cut(s) | 689 |
| Sau3AI | GATC | 3 cut(s) | 340, 583, 604 |
| Sau96I | GGNCC | 2 cut(s) | 479, 625 |
| SchI | GAGTC | 1 cut(s) | 322 |
| SfaNI | GCATC | 2 cut(s) | 89, 381 |
| Sfr274I | CTCGAG | 1 cut(s) | 318 |
| SinI | GGWCC | 1 cut(s) | 479 |
| SlaI | CTCGAG | 1 cut(s) | 318 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 704 |
| SmlI | CTYRAG | 3 cut(s) | 197, 318, 510 |
| SmoI | CTYRAG | 3 cut(s) | 197, 318, 510 |
| Sse9I | AATT | 3 cut(s) | 307, 397, 640 |
| SsiI | CCGC | 1 cut(s) | 334 |
| SspMI | CTAG | 1 cut(s) | 117 |
| TaaI | ACNGT | 4 cut(s) | 62, 87, 289, 499 |
| TaiI | ACGT | 3 cut(s) | 477, 520, 536 |
| TaqI | TCGA | 2 cut(s) | 319, 667 |
| TaqII | GACCGA | 2 cut(s) | 455, 467 |
| TasI | AATT | 3 cut(s) | 307, 397, 640 |
| TfiI | GAWTC | 1 cut(s) | 193 |
| Tru1I | TTAA | 1 cut(s) | 396 |
| Tru9I | TTAA | 1 cut(s) | 396 |
| TscAI | CASTG | 5 cut(s) | 67, 127, 343, 504, 709 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 688 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 3 cut(s) | 318, 459, 482 |
| TspGWI | ACGGA | 3 cut(s) | 347, 581, 700 |
| TspRI | CASTG | 5 cut(s) | 67, 127, 343, 504, 709 |
| Tth111I | GACNNNGTC | 1 cut(s) | 287 |
| VpaK11BI | GGWCC | 1 cut(s) | 479 |
| VspI | ATTAAT | 1 cut(s) | 396 |
| XhoI | CTCGAG | 1 cut(s) | 318 |
| XspI | CTAG | 1 cut(s) | 117 |
| Zsp2I | ATGCAT | 1 cut(s) | 82 |