gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 519 |
| AccII | CGCG | 1 cut(s) | 238 |
| AciI | CCGC | 5 cut(s) | 141, 488, 512, 517, 577 |
| AcoI | YGGCCR | 1 cut(s) | 626 |
| AfaI | GTAC | 1 cut(s) | 121 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgsI | TTSAA | 3 cut(s) | 215, 422, 568 |
| AluBI | AGCT | 5 cut(s) | 230, 280, 321, 391, 443 |
| AluI | AGCT | 5 cut(s) | 230, 280, 321, 391, 443 |
| Alw26I | GTCTC | 1 cut(s) | 167 |
| AoxI | GGCC | 3 cut(s) | 489, 551, 626 |
| ApeKI | GCWGC | 2 cut(s) | 227, 313 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AspS9I | GGNCC | 2 cut(s) | 115, 551 |
| AsuHPI | GGTGA | 3 cut(s) | 130, 522, 641 |
| AvaII | GGWCC | 1 cut(s) | 115 |
| BanII | GRGCYC | 1 cut(s) | 48 |
| BbvI | GCAGC | 2 cut(s) | 239, 300 |
| BccI | CCATC | 1 cut(s) | 462 |
| BcoDI | GTCTC | 1 cut(s) | 167 |
| BfaI | CTAG | 2 cut(s) | 281, 685 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 488 |
| BisI | GCNGC | 3 cut(s) | 228, 314, 489 |
| BlsI | GCNGC | 3 cut(s) | 229, 315, 490 |
| Bme18I | GGWCC | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 551 |
| BmiI | GGNNCC | 2 cut(s) | 116, 181 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 423 |
| BsaI | GGTCTC | 1 cut(s) | 167 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse118I | RCCGGY | 1 cut(s) | 272 |
| Bse1I | ACTGG | 2 cut(s) | 28, 123 |
| Bse3DI | GCAATG | 1 cut(s) | 16 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseMI | GCAATG | 1 cut(s) | 16 |
| BseMII | CTCAG | 1 cut(s) | 33 |
| BseNI | ACTGG | 2 cut(s) | 28, 123 |
| BseRI | GAGGAG | 1 cut(s) | 428 |
| BseXI | GCAGC | 2 cut(s) | 239, 300 |
| BseYI | CCCAGC | 1 cut(s) | 88 |
| BsgI | GTGCAG | 1 cut(s) | 299 |
| Bsh1236I | CGCG | 1 cut(s) | 238 |
| BshFI | GGCC | 3 cut(s) | 491, 553, 628 |
| BsiSI | CCGG | 2 cut(s) | 273, 625 |
| BslFI | GGGAC | 1 cut(s) | 128 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsmAI | GTCTC | 1 cut(s) | 167 |
| BsmFI | GGGAC | 1 cut(s) | 128 |
| BsnI | GGCC | 3 cut(s) | 491, 553, 628 |
| Bso31I | GGTCTC | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 48 |
| BspACI | CCGC | 5 cut(s) | 141, 488, 512, 517, 577 |
| BspANI | GGCC | 3 cut(s) | 491, 553, 628 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspFNI | CGCG | 1 cut(s) | 238 |
| BspHI | TCATGA | 1 cut(s) | 244 |
| BspLI | GGNNCC | 2 cut(s) | 116, 181 |
| BspTNI | GGTCTC | 1 cut(s) | 167 |
| BsrBI | CCGCTC | 1 cut(s) | 519 |
| BsrDI | GCAATG | 1 cut(s) | 16 |
| BsrFI | RCCGGY | 1 cut(s) | 272 |
| BsrI | ACTGG | 2 cut(s) | 28, 123 |
| BssAI | RCCGGY | 1 cut(s) | 272 |
| Bst4CI | ACNGT | 2 cut(s) | 119, 603 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 322 |
| BstC8I | GCNNGC | 5 cut(s) | 264, 274, 278, 323, 366 |
| BstDEI | CTNAG | 3 cut(s) | 42, 73, 407 |
| BstFNI | CGCG | 1 cut(s) | 238 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstMAI | GTCTC | 1 cut(s) | 167 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 18, 322, 488, 634, 681 |
| BstUI | CGCG | 1 cut(s) | 238 |
| BstV1I | GCAGC | 2 cut(s) | 239, 300 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 76 |
| BsuRI | GGCC | 3 cut(s) | 491, 553, 628 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 5 cut(s) | 264, 274, 278, 323, 366 |
| CciI | TCATGA | 1 cut(s) | 244 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr10I | RCCGGY | 1 cut(s) | 272 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 551 |
| Csp6I | GTAC | 1 cut(s) | 120 |
| CviAII | CATG | 2 cut(s) | 245, 395 |
| CviQI | GTAC | 1 cut(s) | 120 |
| DdeI | CTNAG | 3 cut(s) | 42, 73, 407 |
| EaeI | YGGCCR | 1 cut(s) | 626 |
| Eco24I | GRGCYC | 1 cut(s) | 48 |
| Eco31I | GGTCTC | 1 cut(s) | 167 |
| Eco47I | GGWCC | 1 cut(s) | 115 |
| EcoT38I | GRGCYC | 1 cut(s) | 48 |
| FaeI | CATG | 2 cut(s) | 248, 398 |
| FaiI | YATR | 8 cut(s) | 94, 96, 185, 246, 299, 336, 396, 468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 432, 464 |
| FaqI | GGGAC | 1 cut(s) | 128 |
| FatI | CATG | 2 cut(s) | 244, 394 |
| FauI | CCCGC | 2 cut(s) | 519, 524 |
| Fnu4HI | GCNGC | 3 cut(s) | 228, 314, 489 |
| FriOI | GRGCYC | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 3 cut(s) | 228, 314, 489 |
| FspBI | CTAG | 2 cut(s) | 281, 685 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 3 cut(s) | 228, 314, 489 |
| GsaI | CCCAGC | 1 cut(s) | 92 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeIII | GGCC | 3 cut(s) | 491, 553, 628 |
| HapII | CCGG | 2 cut(s) | 273, 625 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1II | CATG | 2 cut(s) | 248, 398 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HindIII | AAGCTT | 1 cut(s) | 441 |
| HinfI | GANTC | 3 cut(s) | 257, 338, 399 |
| HpaII | CCGG | 2 cut(s) | 273, 625 |
| HphI | GGTGA | 3 cut(s) | 130, 522, 641 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 154, 459 |
| Hpy188III | TCNNGA | 3 cut(s) | 202, 212, 245 |
| HpyCH4III | ACNGT | 2 cut(s) | 119, 603 |
| HpyCH4V | TGCA | 2 cut(s) | 227, 316 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 18, 322, 488, 634, 681 |
| HpyF3I | CTNAG | 3 cut(s) | 42, 73, 407 |
| Hsp92II | CATG | 2 cut(s) | 248, 398 |
| HspAI | GCGC | 1 cut(s) | 238 |
| KroI | GCCGGC | 1 cut(s) | 272 |
| KroNI | GCCGGC | 1 cut(s) | 274 |
| LmnI | GCTCC | 1 cut(s) | 388 |
| Lsp1109I | GCAGC | 2 cut(s) | 239, 300 |
| MaeI | CTAG | 2 cut(s) | 281, 685 |
| MbiI | CCGCTC | 1 cut(s) | 519 |
| MboII | GAAGA | 1 cut(s) | 613 |
| MhlI | GDGCHC | 1 cut(s) | 48 |
| MluCI | AATT | 2 cut(s) | 475, 664 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| MnlI | CCTC | 4 cut(s) | 158, 406, 409, 542 |
| MreI | CGCCGGCG | 1 cut(s) | 272 |
| MroNI | GCCGGC | 1 cut(s) | 272 |
| MseI | TTAA | 2 cut(s) | 107, 495 |
| MspI | CCGG | 2 cut(s) | 273, 625 |
| MvnI | CGCG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 18, 322, 488, 634, 681 |
| NaeI | GCCGGC | 1 cut(s) | 274 |
| NgoMIV | GCCGGC | 1 cut(s) | 272 |
| NlaIII | CATG | 2 cut(s) | 248, 398 |
| NlaIV | GGNNCC | 2 cut(s) | 116, 181 |
| PagI | TCATGA | 1 cut(s) | 244 |
| PdiI | GCCGGC | 1 cut(s) | 274 |
| PfeI | GAWTC | 3 cut(s) | 257, 338, 399 |
| PkrI | GCNGC | 3 cut(s) | 229, 315, 490 |
| PspFI | CCCAGC | 1 cut(s) | 88 |
| PspN4I | GGNNCC | 2 cut(s) | 116, 181 |
| PspPI | GGNCC | 2 cut(s) | 115, 551 |
| RsaI | GTAC | 1 cut(s) | 121 |
| RsaNI | GTAC | 1 cut(s) | 120 |
| SaqAI | TTAA | 2 cut(s) | 107, 495 |
| SatI | GCNGC | 3 cut(s) | 228, 314, 489 |
| Sau96I | GGNCC | 2 cut(s) | 115, 551 |
| SduI | GDGCHC | 1 cut(s) | 48 |
| SgrAI | CRCCGGYG | 1 cut(s) | 272 |
| SinI | GGWCC | 1 cut(s) | 115 |
| SmlI | CTYRAG | 1 cut(s) | 438 |
| SmoI | CTYRAG | 1 cut(s) | 438 |
| Sse9I | AATT | 2 cut(s) | 475, 664 |
| SsiI | CCGC | 5 cut(s) | 141, 488, 512, 517, 577 |
| SspMI | CTAG | 2 cut(s) | 281, 685 |
| TaaI | ACNGT | 2 cut(s) | 119, 603 |
| TaqI | TCGA | 1 cut(s) | 613 |
| TasI | AATT | 2 cut(s) | 475, 664 |
| TauI | GCSGC | 1 cut(s) | 491 |
| TfiI | GAWTC | 3 cut(s) | 257, 338, 399 |
| Tru1I | TTAA | 2 cut(s) | 107, 495 |
| Tru9I | TTAA | 2 cut(s) | 107, 495 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseI | GCWGC | 2 cut(s) | 227, 313 |
| TspDTI | ATGAA | 2 cut(s) | 5, 383 |
| TspRI | CASTG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 115 |
| XspI | CTAG | 2 cut(s) | 281, 685 |