transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 197 | 2.8e-22 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 872 |
| Acc36I | ACCTGC | 1 cut(s) | 863 |
| AccB1I | GGYRCC | 1 cut(s) | 920 |
| AccI | GTMKAC | 1 cut(s) | 773 |
| AciI | CCGC | 3 cut(s) | 846, 1331, 1479 |
| AclWI | GGATC | 3 cut(s) | 982, 1257, 1462 |
| AcsI | RAATTY | 5 cut(s) | 18, 113, 480, 590, 1027 |
| AcuI | CTGAAG | 1 cut(s) | 471 |
| AfaI | GTAC | 2 cut(s) | 669, 679 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 900, 932 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 8 cut(s) | 191, 219, 443, 449, 800, 1262, 1277, 1382 |
| AluI | AGCT | 8 cut(s) | 191, 219, 443, 449, 800, 1262, 1277, 1382 |
| Alw26I | GTCTC | 1 cut(s) | 699 |
| AlwI | GGATC | 3 cut(s) | 982, 1257, 1462 |
| ApeKI | GCWGC | 4 cut(s) | 443, 446, 797, 1481 |
| ApoI | RAATTY | 5 cut(s) | 18, 113, 480, 590, 1027 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1139, 1171 |
| AspS9I | GGNCC | 2 cut(s) | 570, 1373 |
| AvaII | GGWCC | 2 cut(s) | 570, 1373 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 870, 903 |
| BanI | GGYRCC | 1 cut(s) | 920 |
| BauI | CACGAG | 1 cut(s) | 699 |
| BbvI | GCAGC | 4 cut(s) | 430, 458, 809, 1468 |
| BccI | CCATC | 2 cut(s) | 116, 1294 |
| BclI | TGATCA | 2 cut(s) | 160, 466 |
| BcoDI | GTCTC | 1 cut(s) | 699 |
| BfaI | CTAG | 3 cut(s) | 522, 729, 1489 |
| BfmI | CTRYAG | 2 cut(s) | 396, 444 |
| BfuAI | ACCTGC | 1 cut(s) | 863 |
| BisI | GCNGC | 4 cut(s) | 444, 447, 798, 1482 |
| BlsI | GCNGC | 4 cut(s) | 445, 448, 799, 1483 |
| Bme18I | GGWCC | 2 cut(s) | 570, 1373 |
| BmgT120I | GGNCC | 2 cut(s) | 570, 1373 |
| BmiI | GGNNCC | 1 cut(s) | 922 |
| BmrI | ACTGGG | 1 cut(s) | 909 |
| BmsI | GCATC | 4 cut(s) | 69, 91, 247, 850 |
| BmuI | ACTGGG | 1 cut(s) | 909 |
| BpmI | CTGGAG | 1 cut(s) | 207 |
| BpuEI | CTTGAG | 1 cut(s) | 1002 |
| BsaI | GGTCTC | 1 cut(s) | 699 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 287, 317 |
| Bse1I | ACTGG | 7 cut(s) | 190, 665, 781, 904, 924, 1097, 1224 |
| Bse3DI | GCAATG | 4 cut(s) | 855, 936, 961, 1114 |
| BseGI | GGATG | 2 cut(s) | 284, 1405 |
| BseMI | GCAATG | 4 cut(s) | 855, 936, 961, 1114 |
| BseMII | CTCAG | 2 cut(s) | 1434, 1445 |
| BseNI | ACTGG | 7 cut(s) | 190, 665, 781, 904, 924, 1097, 1224 |
| BseRI | GAGGAG | 1 cut(s) | 687 |
| BseXI | GCAGC | 4 cut(s) | 430, 458, 809, 1468 |
| BseYI | CCCAGC | 1 cut(s) | 494 |
| BsgI | GTGCAG | 1 cut(s) | 1384 |
| BshNI | GGYRCC | 1 cut(s) | 920 |
| BslFI | GGGAC | 2 cut(s) | 446, 1132 |
| BsmAI | GTCTC | 1 cut(s) | 699 |
| BsmFI | GGGAC | 2 cut(s) | 446, 1132 |
| BsmI | GAATGC | 1 cut(s) | 29 |
| Bso31I | GGTCTC | 1 cut(s) | 699 |
| Bsp143I | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| BspACI | CCGC | 3 cut(s) | 846, 1331, 1479 |
| BspCNI | CTCAG | 2 cut(s) | 1433, 1444 |
| BspHI | TCATGA | 2 cut(s) | 163, 459 |
| BspLI | GGNNCC | 1 cut(s) | 922 |
| BspMAI | CTGCAG | 1 cut(s) | 448 |
| BspMI | ACCTGC | 1 cut(s) | 863 |
| BspPI | GGATC | 3 cut(s) | 982, 1257, 1462 |
| BspT107I | GGYRCC | 1 cut(s) | 920 |
| BspTNI | GGTCTC | 1 cut(s) | 699 |
| BsrDI | GCAATG | 4 cut(s) | 855, 936, 961, 1114 |
| BsrI | ACTGG | 7 cut(s) | 190, 665, 781, 904, 924, 1097, 1224 |
| BssMI | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst4CI | ACNGT | 1 cut(s) | 1359 |
| BstDEI | CTNAG | 2 cut(s) | 1420, 1431 |
| BstF5I | GGATG | 2 cut(s) | 284, 1405 |
| BstKTI | GATC | 5 cut(s) | 163, 469, 977, 1252, 1457 |
| BstMAI | GTCTC | 1 cut(s) | 699 |
| BstMBI | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 758, 1388 |
| BstSFI | CTRYAG | 2 cut(s) | 396, 444 |
| BstV1I | GCAGC | 4 cut(s) | 430, 458, 809, 1468 |
| BstX2I | RGATCY | 1 cut(s) | 974 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 931 |
| BstYI | RGATCY | 1 cut(s) | 974 |
| BtgZI | GCGATG | 1 cut(s) | 873 |
| BtsCI | GGATG | 2 cut(s) | 284, 1405 |
| BtsIMutI | CAGTG | 4 cut(s) | 183, 931, 1224, 1231 |
| BveI | ACCTGC | 1 cut(s) | 863 |
| CciI | TCATGA | 2 cut(s) | 163, 459 |
| Cfr13I | GGNCC | 2 cut(s) | 570, 1373 |
| CseI | GACGC | 1 cut(s) | 772 |
| Csp6I | GTAC | 2 cut(s) | 668, 678 |
| CviAII | CATG | 5 cut(s) | 101, 164, 460, 518, 769 |
| CviQI | GTAC | 2 cut(s) | 668, 678 |
| DdeI | CTNAG | 2 cut(s) | 1420, 1431 |
| DpnI | GATC | 5 cut(s) | 162, 468, 976, 1251, 1456 |
| DpnII | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| DraI | TTTAAA | 2 cut(s) | 421, 1164 |
| Eco31I | GGTCTC | 1 cut(s) | 699 |
| Eco47I | GGWCC | 2 cut(s) | 570, 1373 |
| Eco57I | CTGAAG | 1 cut(s) | 471 |
| EcoO109I | RGGNCCY | 2 cut(s) | 570, 1373 |
| EcoT22I | ATGCAT | 3 cut(s) | 31, 84, 1132 |
| FaeI | CATG | 5 cut(s) | 104, 167, 463, 521, 772 |
| FaqI | GGGAC | 2 cut(s) | 446, 1132 |
| FatI | CATG | 5 cut(s) | 100, 163, 459, 517, 768 |
| FauNDI | CATATG | 2 cut(s) | 984, 1132 |
| FbaI | TGATCA | 2 cut(s) | 160, 466 |
| FblI | GTMKAC | 1 cut(s) | 773 |
| Fnu4HI | GCNGC | 4 cut(s) | 444, 447, 798, 1482 |
| FokI | GGATG | 2 cut(s) | 291, 1392 |
| Fsp4HI | GCNGC | 4 cut(s) | 444, 447, 798, 1482 |
| FspBI | CTAG | 3 cut(s) | 522, 729, 1489 |
| GluI | GCNGC | 4 cut(s) | 444, 447, 798, 1482 |
| GsaI | CCCAGC | 1 cut(s) | 498 |
| GsuI | CTGGAG | 1 cut(s) | 207 |
| HgaI | GACGC | 1 cut(s) | 772 |
| Hin1II | CATG | 5 cut(s) | 104, 167, 463, 521, 772 |
| HincII | GTYRAC | 2 cut(s) | 181, 1349 |
| HindII | GTYRAC | 2 cut(s) | 181, 1349 |
| HindIII | AAGCTT | 1 cut(s) | 1380 |
| HinfI | GANTC | 5 cut(s) | 13, 167, 392, 908, 1214 |
| HpaI | GTTAAC | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 5 cut(s) | 181, 204, 306, 774, 1349 |
| Hpy188I | TCNGA | 9 cut(s) | 78, 153, 285, 381, 391, 536, 589, 1254, 1410 |
| Hpy8I | GTNNAC | 5 cut(s) | 181, 204, 306, 774, 1349 |
| HpyAV | CCTTC | 5 cut(s) | 148, 150, 775, 846, 1138 |
| HpyCH4III | ACNGT | 1 cut(s) | 1359 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 758, 1388 |
| HpyF3I | CTNAG | 2 cut(s) | 1420, 1431 |
| Hsp92II | CATG | 5 cut(s) | 104, 167, 463, 521, 772 |
| Ksp22I | TGATCA | 2 cut(s) | 160, 466 |
| KspAI | GTTAAC | 1 cut(s) | 181 |
| Kzo9I | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| LmnI | GCTCC | 4 cut(s) | 188, 766, 805, 1274 |
| Lsp1109I | GCAGC | 4 cut(s) | 430, 458, 809, 1468 |
| LweI | GCATC | 4 cut(s) | 69, 91, 247, 850 |
| MaeI | CTAG | 3 cut(s) | 522, 729, 1489 |
| MaeIII | GTNAC | 2 cut(s) | 1219, 1423 |
| MalI | GATC | 5 cut(s) | 162, 468, 976, 1251, 1456 |
| MboI | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| MboII | GAAGA | 6 cut(s) | 32, 83, 572, 1148, 1267, 1346 |
| MflI | RGATCY | 1 cut(s) | 974 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| Mph1103I | ATGCAT | 3 cut(s) | 31, 84, 1132 |
| MseI | TTAA | 8 cut(s) | 180, 312, 420, 477, 581, 605, 1163, 1436 |
| MspA1I | CMGCKG | 2 cut(s) | 449, 1481 |
| Mva1269I | GAATGC | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 758, 1388 |
| NdeI | CATATG | 2 cut(s) | 984, 1132 |
| NdeII | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| NlaIII | CATG | 5 cut(s) | 104, 167, 463, 521, 772 |
| NlaIV | GGNNCC | 1 cut(s) | 922 |
| NmuCI | GTSAC | 1 cut(s) | 1219 |
| NsiI | ATGCAT | 3 cut(s) | 31, 84, 1132 |
| PagI | TCATGA | 2 cut(s) | 163, 459 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 59 |
| PctI | GAATGC | 1 cut(s) | 29 |
| PfeI | GAWTC | 4 cut(s) | 13, 392, 908, 1214 |
| PkrI | GCNGC | 4 cut(s) | 445, 448, 799, 1483 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PpuMI | RGGWCCY | 2 cut(s) | 570, 1373 |
| PsiI | TTATAA | 1 cut(s) | 872 |
| Psp5II | RGGWCCY | 2 cut(s) | 570, 1373 |
| PspFI | CCCAGC | 1 cut(s) | 494 |
| PspN4I | GGNNCC | 1 cut(s) | 922 |
| PspPI | GGNCC | 2 cut(s) | 570, 1373 |
| PspPPI | RGGWCCY | 2 cut(s) | 570, 1373 |
| PstI | CTGCAG | 1 cut(s) | 448 |
| PsuI | RGATCY | 1 cut(s) | 974 |
| PvuII | CAGCTG | 1 cut(s) | 449 |
| RsaI | GTAC | 2 cut(s) | 669, 679 |
| RsaNI | GTAC | 2 cut(s) | 668, 678 |
| SaqAI | TTAA | 8 cut(s) | 180, 312, 420, 477, 581, 605, 1163, 1436 |
| SatI | GCNGC | 4 cut(s) | 444, 447, 798, 1482 |
| Sau3AI | GATC | 5 cut(s) | 160, 466, 974, 1249, 1454 |
| Sau96I | GGNCC | 2 cut(s) | 570, 1373 |
| SchI | GAGTC | 1 cut(s) | 161 |
| SfaNI | GCATC | 4 cut(s) | 69, 91, 247, 850 |
| SfcI | CTRYAG | 2 cut(s) | 396, 444 |
| SinI | GGWCC | 2 cut(s) | 570, 1373 |
| SmlI | CTYRAG | 1 cut(s) | 1017 |
| SmoI | CTYRAG | 1 cut(s) | 1017 |
| SsiI | CCGC | 3 cut(s) | 846, 1331, 1479 |
| SspMI | CTAG | 3 cut(s) | 522, 729, 1489 |
| TaaI | ACNGT | 1 cut(s) | 1359 |
| TaqI | TCGA | 3 cut(s) | 11, 290, 620 |
| TfiI | GAWTC | 4 cut(s) | 13, 392, 908, 1214 |
| Tru1I | TTAA | 8 cut(s) | 180, 312, 420, 477, 581, 605, 1163, 1436 |
| Tru9I | TTAA | 8 cut(s) | 180, 312, 420, 477, 581, 605, 1163, 1436 |
| TscAI | CASTG | 4 cut(s) | 190, 931, 1224, 1231 |
| TseFI | GTSAC | 1 cut(s) | 1219 |
| TseI | GCWGC | 4 cut(s) | 443, 446, 797, 1481 |
| Tsp45I | GTSAC | 1 cut(s) | 1219 |
| TspRI | CASTG | 4 cut(s) | 190, 931, 1224, 1231 |
| VpaK11BI | GGWCC | 2 cut(s) | 570, 1373 |
| XapI | RAATTY | 5 cut(s) | 18, 113, 480, 590, 1027 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 931 |
| XmiI | GTMKAC | 1 cut(s) | 773 |
| XspI | CTAG | 3 cut(s) | 522, 729, 1489 |
| Zsp2I | ATGCAT | 3 cut(s) | 31, 84, 1132 |