gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AciI | CCGC | 1 cut(s) | 40 |
| AcoI | YGGCCR | 1 cut(s) | 390 |
| AdeI | CACNNNGTG | 1 cut(s) | 437 |
| AgsI | TTSAA | 3 cut(s) | 140, 182, 310 |
| AluBI | AGCT | 1 cut(s) | 326 |
| AluI | AGCT | 1 cut(s) | 326 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AoxI | GGCC | 2 cut(s) | 235, 390 |
| ApeKI | GCWGC | 2 cut(s) | 65, 326 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| BalI | TGGCCA | 1 cut(s) | 392 |
| BanII | GRGCYC | 1 cut(s) | 280 |
| BbvI | GCAGC | 2 cut(s) | 77, 313 |
| BccI | CCATC | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 2 cut(s) | 168, 423 |
| BfmI | CTRYAG | 1 cut(s) | 327 |
| BisI | GCNGC | 2 cut(s) | 66, 327 |
| BlsI | GCNGC | 2 cut(s) | 67, 328 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 337, 369 |
| BpuEI | CTTGAG | 3 cut(s) | 41, 80, 339 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 183, 213 |
| BseMII | CTCAG | 1 cut(s) | 293 |
| BseXI | GCAGC | 2 cut(s) | 77, 313 |
| BshFI | GGCC | 2 cut(s) | 237, 392 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsnI | GGCC | 2 cut(s) | 237, 392 |
| Bsp1286I | GDGCHC | 1 cut(s) | 280 |
| BspACI | CCGC | 1 cut(s) | 40 |
| BspANI | GGCC | 2 cut(s) | 237, 392 |
| BspCNI | CTCAG | 1 cut(s) | 292 |
| BspMAI | CTGCAG | 1 cut(s) | 331 |
| Bst4CI | ACNGT | 3 cut(s) | 187, 226, 268 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 37 |
| BstDEI | CTNAG | 1 cut(s) | 279 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 37, 46, 389 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSFI | CTRYAG | 1 cut(s) | 327 |
| BstV1I | GCAGC | 2 cut(s) | 77, 313 |
| BsuRI | GGCC | 2 cut(s) | 237, 392 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CfoI | GCGC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 6, 37, 148 |
| CviJI | RGCY | 7 cut(s) | 49, 164, 237, 278, 326, 359, 392 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 164, 237, 278, 326, 359, 392 |
| DdeI | CTNAG | 1 cut(s) | 279 |
| DraIII | CACNNNGTG | 1 cut(s) | 437 |
| EaeI | YGGCCR | 1 cut(s) | 390 |
| Eco147I | AGGCCT | 1 cut(s) | 237 |
| Eco24I | GRGCYC | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 9, 40, 151 |
| FaiI | YATR | 8 cut(s) | 7, 38, 107, 149, 246, 252, 386, 417 |
| FatI | CATG | 3 cut(s) | 5, 36, 147 |
| Fnu4HI | GCNGC | 2 cut(s) | 66, 327 |
| FriOI | GRGCYC | 1 cut(s) | 280 |
| Fsp4HI | GCNGC | 2 cut(s) | 66, 327 |
| FspBI | CTAG | 2 cut(s) | 168, 423 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 2 cut(s) | 66, 327 |
| HaeIII | GGCC | 2 cut(s) | 237, 392 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin1II | CATG | 3 cut(s) | 9, 40, 151 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| HinfI | GANTC | 2 cut(s) | 112, 352 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy188III | TCNNGA | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 3 cut(s) | 187, 226, 268 |
| HpyCH4V | TGCA | 5 cut(s) | 65, 91, 109, 176, 329 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 37, 46, 389 |
| HpyF3I | CTNAG | 1 cut(s) | 279 |
| Hsp92II | CATG | 3 cut(s) | 9, 40, 151 |
| HspAI | GCGC | 1 cut(s) | 29 |
| LpnPI | CCDG | 2 cut(s) | 259, 396 |
| Lsp1109I | GCAGC | 2 cut(s) | 77, 313 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 2 cut(s) | 168, 423 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MboII | GAAGA | 2 cut(s) | 221, 399 |
| MhlI | GDGCHC | 1 cut(s) | 280 |
| MlsI | TGGCCA | 1 cut(s) | 392 |
| MluNI | TGGCCA | 1 cut(s) | 392 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MmeI | TCCRAC | 1 cut(s) | 169 |
| MnlI | CCTC | 3 cut(s) | 227, 370, 379 |
| Mox20I | TGGCCA | 1 cut(s) | 392 |
| MscI | TGGCCA | 1 cut(s) | 392 |
| MseI | TTAA | 3 cut(s) | 159, 261, 321 |
| Msp20I | TGGCCA | 1 cut(s) | 392 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 37, 46, 389 |
| NlaIII | CATG | 3 cut(s) | 9, 40, 151 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PceI | AGGCCT | 1 cut(s) | 237 |
| PfeI | GAWTC | 1 cut(s) | 112 |
| PkrI | GCNGC | 2 cut(s) | 67, 328 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| PstI | CTGCAG | 1 cut(s) | 331 |
| SaqAI | TTAA | 3 cut(s) | 159, 261, 321 |
| SatI | GCNGC | 2 cut(s) | 66, 327 |
| SchI | GAGTC | 1 cut(s) | 346 |
| SduI | GDGCHC | 1 cut(s) | 280 |
| SetI | ASST | 4 cut(s) | 73, 328, 371, 449 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SfcI | CTRYAG | 1 cut(s) | 327 |
| SmlI | CTYRAG | 3 cut(s) | 56, 95, 354 |
| SmoI | CTYRAG | 3 cut(s) | 56, 95, 354 |
| SseBI | AGGCCT | 1 cut(s) | 237 |
| SsiI | CCGC | 1 cut(s) | 40 |
| SspI | AATATT | 1 cut(s) | 85 |
| SspMI | CTAG | 2 cut(s) | 168, 423 |
| StuI | AGGCCT | 1 cut(s) | 237 |
| TaaI | ACNGT | 3 cut(s) | 187, 226, 268 |
| TfiI | GAWTC | 1 cut(s) | 112 |
| Tru1I | TTAA | 3 cut(s) | 159, 261, 321 |
| Tru9I | TTAA | 3 cut(s) | 159, 261, 321 |
| TscAI | CASTG | 1 cut(s) | 231 |
| TseI | GCWGC | 2 cut(s) | 65, 326 |
| TspDTI | ATGAA | 1 cut(s) | 222 |
| TspRI | CASTG | 1 cut(s) | 231 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XspI | CTAG | 2 cut(s) | 168, 423 |