transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 9 - 89 | 3.8e-13 | Integrase core domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 91, 319 |
| AclWI | GGATC | 1 cut(s) | 130 |
| AcsI | RAATTY | 3 cut(s) | 56, 121, 164 |
| AfaI | GTAC | 1 cut(s) | 450 |
| AgsI | TTSAA | 2 cut(s) | 119, 365 |
| AluBI | AGCT | 1 cut(s) | 368 |
| AluI | AGCT | 1 cut(s) | 368 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 1 cut(s) | 130 |
| AoxI | GGCC | 1 cut(s) | 277 |
| ApoI | RAATTY | 3 cut(s) | 56, 121, 164 |
| AseI | ATTAAT | 1 cut(s) | 393 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| BciVI | GTATCC | 1 cut(s) | 245 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfuI | GTATCC | 1 cut(s) | 245 |
| BisI | GCNGC | 1 cut(s) | 91 |
| BlsI | GCNGC | 1 cut(s) | 92 |
| BmiI | GGNNCC | 1 cut(s) | 157 |
| BoxI | GACNNNNGTC | 1 cut(s) | 380 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BseRI | GAGGAG | 1 cut(s) | 443 |
| BshFI | GGCC | 1 cut(s) | 279 |
| BslFI | GGGAC | 1 cut(s) | 240 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 1 cut(s) | 240 |
| BsnI | GGCC | 1 cut(s) | 279 |
| Bsp143I | GATC | 1 cut(s) | 135 |
| BspACI | CCGC | 2 cut(s) | 91, 319 |
| BspANI | GGCC | 1 cut(s) | 279 |
| BspLI | GGNNCC | 1 cut(s) | 157 |
| BspPI | GGATC | 1 cut(s) | 130 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BssMI | GATC | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 1 cut(s) | 246 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstKTI | GATC | 1 cut(s) | 138 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 297 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 380 |
| BsuI | GTATCC | 1 cut(s) | 245 |
| BsuRI | GGCC | 1 cut(s) | 279 |
| BtgZI | GCGATG | 1 cut(s) | 281 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Csp6I | GTAC | 1 cut(s) | 449 |
| CviAII | CATG | 3 cut(s) | 203, 252, 313 |
| CviJI | RGCY | 3 cut(s) | 279, 368, 441 |
| CviKI_1 | RGCY | 3 cut(s) | 279, 368, 441 |
| CviQI | GTAC | 1 cut(s) | 449 |
| DpnI | GATC | 1 cut(s) | 137 |
| DpnII | GATC | 1 cut(s) | 135 |
| DraI | TTTAAA | 1 cut(s) | 31 |
| EcoRI | GAATTC | 1 cut(s) | 56 |
| FaeI | CATG | 3 cut(s) | 206, 255, 316 |
| FaqI | GGGAC | 1 cut(s) | 240 |
| FatI | CATG | 3 cut(s) | 202, 251, 312 |
| FauI | CCCGC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 1 cut(s) | 91 |
| Fsp4HI | GCNGC | 1 cut(s) | 91 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 1 cut(s) | 91 |
| HaeIII | GGCC | 1 cut(s) | 279 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin1II | CATG | 3 cut(s) | 206, 255, 316 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HphI | GGTGA | 1 cut(s) | 40 |
| HpyAV | CCTTC | 2 cut(s) | 179, 481 |
| HpyCH4III | ACNGT | 1 cut(s) | 246 |
| HpyCH4IV | ACGT | 1 cut(s) | 64 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 297 |
| HpySE526I | ACGT | 1 cut(s) | 64 |
| Hsp92II | CATG | 3 cut(s) | 206, 255, 316 |
| HspAI | GCGC | 1 cut(s) | 88 |
| Kzo9I | GATC | 1 cut(s) | 135 |
| LpnPI | CCDG | 3 cut(s) | 324, 422, 472 |
| MaeII | ACGT | 1 cut(s) | 64 |
| MalI | GATC | 1 cut(s) | 137 |
| MboI | GATC | 1 cut(s) | 135 |
| MboII | GAAGA | 4 cut(s) | 320, 389, 392, 458 |
| MluCI | AATT | 3 cut(s) | 56, 121, 164 |
| MmeI | TCCRAC | 1 cut(s) | 262 |
| MnlI | CCTC | 6 cut(s) | 94, 290, 357, 388, 440, 464 |
| MseI | TTAA | 3 cut(s) | 30, 150, 393 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 297 |
| NdeII | GATC | 1 cut(s) | 135 |
| NlaIII | CATG | 3 cut(s) | 206, 255, 316 |
| NlaIV | GGNNCC | 1 cut(s) | 157 |
| PkrI | GCNGC | 1 cut(s) | 92 |
| PshAI | GACNNNNGTC | 1 cut(s) | 380 |
| PshBI | ATTAAT | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 450 |
| RsaNI | GTAC | 1 cut(s) | 449 |
| SaqAI | TTAA | 3 cut(s) | 30, 150, 393 |
| SatI | GCNGC | 1 cut(s) | 91 |
| Sau3AI | GATC | 1 cut(s) | 135 |
| SetI | ASST | 6 cut(s) | 67, 105, 370, 374, 380, 432 |
| Sse9I | AATT | 3 cut(s) | 56, 121, 164 |
| SsiI | CCGC | 2 cut(s) | 91, 319 |
| TaaI | ACNGT | 1 cut(s) | 246 |
| TaiI | ACGT | 1 cut(s) | 67 |
| TasI | AATT | 3 cut(s) | 56, 121, 164 |
| TauI | GCSGC | 1 cut(s) | 93 |
| Tru1I | TTAA | 3 cut(s) | 30, 150, 393 |
| Tru9I | TTAA | 3 cut(s) | 30, 150, 393 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TspDTI | ATGAA | 2 cut(s) | 69, 240 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 1 cut(s) | 193 |
| VspI | ATTAAT | 1 cut(s) | 393 |
| XapI | RAATTY | 3 cut(s) | 56, 121, 164 |