gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 40 - 176 | 1.1e-11 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 307, 312 |
| AcoI | YGGCCR | 1 cut(s) | 284 |
| AcsI | RAATTY | 1 cut(s) | 344 |
| AcuI | CTGAAG | 3 cut(s) | 27, 422, 465 |
| AfaI | GTAC | 2 cut(s) | 150, 179 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflIII | ACRYGT | 2 cut(s) | 180, 279 |
| AgsI | TTSAA | 2 cut(s) | 142, 488 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 3 cut(s) | 163, 415, 455 |
| AluI | AGCT | 3 cut(s) | 163, 415, 455 |
| AoxI | GGCC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 1 cut(s) | 503 |
| ApoI | RAATTY | 1 cut(s) | 344 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 167, 199 |
| AspLEI | GCGC | 1 cut(s) | 314 |
| AspS9I | GGNCC | 2 cut(s) | 112, 235 |
| AvaII | GGWCC | 2 cut(s) | 112, 235 |
| BalI | TGGCCA | 1 cut(s) | 286 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 122, 154 |
| BbsI | GAAGAC | 1 cut(s) | 244 |
| BbvI | GCAGC | 1 cut(s) | 490 |
| BccI | CCATC | 1 cut(s) | 452 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BfaI | CTAG | 3 cut(s) | 366, 395, 434 |
| BisI | GCNGC | 1 cut(s) | 504 |
| BlsI | GCNGC | 1 cut(s) | 505 |
| Bme18I | GGWCC | 2 cut(s) | 112, 235 |
| BmgT120I | GGNCC | 2 cut(s) | 112, 235 |
| BmiI | GGNNCC | 3 cut(s) | 114, 236, 392 |
| BmrI | ACTGGG | 1 cut(s) | 110 |
| BmsI | GCATC | 1 cut(s) | 20 |
| BmuI | ACTGGG | 1 cut(s) | 110 |
| BpiI | GAAGAC | 1 cut(s) | 244 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaWI | WCCGGW | 1 cut(s) | 294 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse1I | ACTGG | 1 cut(s) | 116 |
| BseGI | GGATG | 1 cut(s) | 242 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 6 |
| BseNI | ACTGG | 1 cut(s) | 116 |
| BseXI | GCAGC | 1 cut(s) | 490 |
| Bsh1236I | CGCG | 2 cut(s) | 307, 312 |
| BshFI | GGCC | 1 cut(s) | 286 |
| BsiSI | CCGG | 1 cut(s) | 295 |
| BslFI | GGGAC | 3 cut(s) | 98, 153, 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmFI | GGGAC | 3 cut(s) | 98, 153, 248 |
| BsnI | GGCC | 1 cut(s) | 286 |
| Bsp68I | TCGCGA | 1 cut(s) | 307 |
| BspANI | GGCC | 1 cut(s) | 286 |
| BspCNI | CTCAG | 1 cut(s) | 7 |
| BspFNI | CGCG | 2 cut(s) | 307, 312 |
| BspLI | GGNNCC | 3 cut(s) | 114, 236, 392 |
| BsrI | ACTGG | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 143 |
| BstC8I | GCNNGC | 2 cut(s) | 55, 305 |
| BstDEI | CTNAG | 2 cut(s) | 15, 528 |
| BstF5I | GGATG | 1 cut(s) | 242 |
| BstFNI | CGCG | 2 cut(s) | 307, 312 |
| BstHHI | GCGC | 1 cut(s) | 314 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 309, 421 |
| BstNSI | RCATGY | 2 cut(s) | 184, 283 |
| BstUI | CGCG | 2 cut(s) | 307, 312 |
| BstV1I | GCAGC | 1 cut(s) | 490 |
| BstV2I | GAAGAC | 1 cut(s) | 244 |
| BsuRI | GGCC | 1 cut(s) | 286 |
| BtsCI | GGATG | 1 cut(s) | 242 |
| BtuMI | TCGCGA | 1 cut(s) | 307 |
| Cac8I | GCNNGC | 2 cut(s) | 55, 305 |
| CfoI | GCGC | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 2 cut(s) | 112, 235 |
| CseI | GACGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 2 cut(s) | 149, 178 |
| CviAII | CATG | 7 cut(s) | 59, 152, 181, 280, 300, 509, 518 |
| CviJI | RGCY | 8 cut(s) | 5, 57, 163, 286, 391, 415, 443, 455 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 57, 163, 286, 391, 415, 443, 455 |
| CviQI | GTAC | 2 cut(s) | 149, 178 |
| DdeI | CTNAG | 2 cut(s) | 15, 528 |
| EaeI | YGGCCR | 1 cut(s) | 284 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 143 |
| EarI | CTCTTC | 2 cut(s) | 48, 143 |
| Eco47I | GGWCC | 2 cut(s) | 112, 235 |
| Eco57I | CTGAAG | 3 cut(s) | 27, 422, 465 |
| FaeI | CATG | 7 cut(s) | 62, 155, 184, 283, 303, 512, 521 |
| FaqI | GGGAC | 3 cut(s) | 98, 153, 248 |
| FatI | CATG | 7 cut(s) | 58, 151, 180, 279, 299, 508, 517 |
| Fnu4HI | GCNGC | 1 cut(s) | 504 |
| FokI | GGATG | 1 cut(s) | 229 |
| Fsp4HI | GCNGC | 1 cut(s) | 504 |
| FspBI | CTAG | 3 cut(s) | 366, 395, 434 |
| GlaI | GCGC | 1 cut(s) | 313 |
| GluI | GCNGC | 1 cut(s) | 504 |
| HaeIII | GGCC | 1 cut(s) | 286 |
| HapII | CCGG | 1 cut(s) | 295 |
| HgaI | GACGC | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 314 |
| Hin1II | CATG | 7 cut(s) | 62, 155, 184, 283, 303, 512, 521 |
| Hin6I | GCGC | 1 cut(s) | 312 |
| HinP1I | GCGC | 1 cut(s) | 312 |
| HinfI | GANTC | 3 cut(s) | 249, 385, 462 |
| HpaII | CCGG | 1 cut(s) | 295 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 106, 123 |
| Hpy188III | TCNNGA | 3 cut(s) | 246, 306, 382 |
| Hpy99I | CGWCG | 1 cut(s) | 312 |
| HpyAV | CCTTC | 1 cut(s) | 222 |
| HpyCH4IV | ACGT | 1 cut(s) | 128 |
| HpyCH4V | TGCA | 3 cut(s) | 53, 263, 353 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 309, 421 |
| HpyF3I | CTNAG | 2 cut(s) | 15, 528 |
| HpySE526I | ACGT | 1 cut(s) | 128 |
| Hsp92II | CATG | 7 cut(s) | 62, 155, 184, 283, 303, 512, 521 |
| HspAI | GCGC | 1 cut(s) | 312 |
| LmnI | GCTCC | 1 cut(s) | 396 |
| LpnPI | CCDG | 6 cut(s) | 63, 129, 222, 259, 308, 413 |
| Lsp1109I | GCAGC | 1 cut(s) | 490 |
| LweI | GCATC | 1 cut(s) | 20 |
| MaeI | CTAG | 3 cut(s) | 366, 395, 434 |
| MaeII | ACGT | 1 cut(s) | 128 |
| MboII | GAAGA | 8 cut(s) | 35, 130, 244, 353, 415, 458, 500, 506 |
| MfeI | CAATTG | 1 cut(s) | 220 |
| MlsI | TGGCCA | 1 cut(s) | 286 |
| MluCI | AATT | 5 cut(s) | 107, 220, 332, 344, 427 |
| MluNI | TGGCCA | 1 cut(s) | 286 |
| MlyI | GAGTC | 3 cut(s) | 258, 379, 456 |
| MnlI | CCTC | 6 cut(s) | 39, 51, 146, 225, 268, 331 |
| Mox20I | TGGCCA | 1 cut(s) | 286 |
| MscI | TGGCCA | 1 cut(s) | 286 |
| MseI | TTAA | 1 cut(s) | 329 |
| Msp20I | TGGCCA | 1 cut(s) | 286 |
| MspI | CCGG | 1 cut(s) | 295 |
| MunI | CAATTG | 1 cut(s) | 220 |
| MvnI | CGCG | 2 cut(s) | 307, 312 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 309, 421 |
| NlaIII | CATG | 7 cut(s) | 62, 155, 184, 283, 303, 512, 521 |
| NlaIV | GGNNCC | 3 cut(s) | 114, 236, 392 |
| NmeAIII | GCCGAG | 1 cut(s) | 367 |
| NruI | TCGCGA | 1 cut(s) | 307 |
| NspI | RCATGY | 2 cut(s) | 184, 283 |
| PciI | ACATGT | 2 cut(s) | 180, 279 |
| PkrI | GCNGC | 1 cut(s) | 505 |
| PleI | GAGTC | 3 cut(s) | 257, 379, 456 |
| PpsI | GAGTC | 3 cut(s) | 257, 379, 456 |
| PscI | ACATGT | 2 cut(s) | 180, 279 |
| PspN4I | GGNNCC | 3 cut(s) | 114, 236, 392 |
| PspPI | GGNCC | 2 cut(s) | 112, 235 |
| RruI | TCGCGA | 1 cut(s) | 307 |
| RsaI | GTAC | 2 cut(s) | 150, 179 |
| RsaNI | GTAC | 2 cut(s) | 149, 178 |
| SaqAI | TTAA | 1 cut(s) | 329 |
| SatI | GCNGC | 1 cut(s) | 504 |
| Sau96I | GGNCC | 2 cut(s) | 112, 235 |
| SchI | GAGTC | 3 cut(s) | 258, 379, 456 |
| SetI | ASST | 8 cut(s) | 31, 131, 138, 165, 367, 402, 417, 457 |
| SfaNI | GCATC | 1 cut(s) | 20 |
| SinI | GGWCC | 2 cut(s) | 112, 235 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 5 cut(s) | 107, 220, 332, 344, 427 |
| SspMI | CTAG | 3 cut(s) | 366, 395, 434 |
| TaiI | ACGT | 1 cut(s) | 131 |
| TaqI | TCGA | 1 cut(s) | 373 |
| TaqII | GACCGA | 2 cut(s) | 55, 252 |
| TasI | AATT | 5 cut(s) | 107, 220, 332, 344, 427 |
| TatI | WGTACW | 1 cut(s) | 177 |
| Tru1I | TTAA | 1 cut(s) | 329 |
| Tru9I | TTAA | 1 cut(s) | 329 |
| TseI | GCWGC | 1 cut(s) | 503 |
| TspDTI | ATGAA | 3 cut(s) | 35, 244, 506 |
| VpaK11BI | GGWCC | 2 cut(s) | 112, 235 |
| XapI | RAATTY | 1 cut(s) | 344 |
| XceI | RCATGY | 2 cut(s) | 184, 283 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 489 |
| XspI | CTAG | 3 cut(s) | 366, 395, 434 |