gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 87 - 161 | 1.3e-14 | Pol polyprotein, beta-barrel domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 272 |
| AcsI | RAATTY | 2 cut(s) | 388, 427 |
| AdeI | CACNNNGTG | 1 cut(s) | 205 |
| AfaI | GTAC | 1 cut(s) | 474 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 384 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AjnI | CCWGG | 2 cut(s) | 14, 61 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 293, 325 |
| AluBI | AGCT | 2 cut(s) | 230, 451 |
| AluI | AGCT | 2 cut(s) | 230, 451 |
| Alw26I | GTCTC | 2 cut(s) | 332, 379 |
| ApoI | RAATTY | 2 cut(s) | 388, 427 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 1 cut(s) | 41 |
| AsuHPI | GGTGA | 3 cut(s) | 117, 312, 371 |
| AvaII | GGWCC | 1 cut(s) | 41 |
| BanI | GGYRCC | 1 cut(s) | 272 |
| BccI | CCATC | 2 cut(s) | 97, 244 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 2 cut(s) | 16, 63 |
| BcoDI | GTCTC | 2 cut(s) | 332, 379 |
| BfoI | RGCGCY | 1 cut(s) | 149 |
| Bme1390I | CCNGG | 2 cut(s) | 16, 63 |
| Bme18I | GGWCC | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 1 cut(s) | 41 |
| BmiI | GGNNCC | 2 cut(s) | 87, 274 |
| BmrFI | CCNGG | 2 cut(s) | 16, 63 |
| BmsI | GCATC | 1 cut(s) | 505 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| BsaI | GGTCTC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 2 cut(s) | 312, 519 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 384 |
| BseBI | CCWGG | 2 cut(s) | 16, 63 |
| BseDI | CCNNGG | 2 cut(s) | 312, 519 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BshNI | GGYRCC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BsmAI | GTCTC | 2 cut(s) | 332, 379 |
| Bso31I | GGTCTC | 1 cut(s) | 332 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspLI | GGNNCC | 2 cut(s) | 87, 274 |
| BspT107I | GGYRCC | 1 cut(s) | 272 |
| BspTNI | GGTCTC | 1 cut(s) | 332 |
| BssECI | CCNNGG | 2 cut(s) | 312, 519 |
| BssT1I | CCWWGG | 2 cut(s) | 312, 519 |
| Bst2UI | CCWGG | 2 cut(s) | 16, 63 |
| Bst4CI | ACNGT | 2 cut(s) | 107, 205 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstH2I | RGCGCY | 1 cut(s) | 149 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstMAI | GTCTC | 2 cut(s) | 332, 379 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 196 |
| BstNI | CCWGG | 2 cut(s) | 16, 63 |
| BstNSI | RCATGY | 1 cut(s) | 194 |
| BstSCI | CCNGG | 2 cut(s) | 14, 61 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 340 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| CfoI | GCGC | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 1 cut(s) | 41 |
| CsiI | ACCWGGT | 1 cut(s) | 14 |
| Csp6I | GTAC | 1 cut(s) | 473 |
| CviAII | CATG | 4 cut(s) | 8, 191, 298, 380 |
| CviJI | RGCY | 6 cut(s) | 57, 230, 317, 451, 505, 524 |
| CviKI_1 | RGCY | 6 cut(s) | 57, 230, 317, 451, 505, 524 |
| CviQI | GTAC | 1 cut(s) | 473 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DraIII | CACNNNGTG | 1 cut(s) | 205 |
| Eco130I | CCWWGG | 2 cut(s) | 312, 519 |
| Eco31I | GGTCTC | 1 cut(s) | 332 |
| Eco47I | GGWCC | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 41 |
| EcoRI | GAATTC | 1 cut(s) | 388 |
| EcoRII | CCWGG | 2 cut(s) | 14, 61 |
| EcoT14I | CCWWGG | 2 cut(s) | 312, 519 |
| EcoT22I | ATGCAT | 1 cut(s) | 192 |
| ErhI | CCWWGG | 2 cut(s) | 312, 519 |
| FaeI | CATG | 4 cut(s) | 11, 194, 301, 383 |
| FatI | CATG | 4 cut(s) | 7, 190, 297, 379 |
| FauNDI | CATATG | 1 cut(s) | 285 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeII | RGCGCY | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin1II | CATG | 4 cut(s) | 11, 194, 301, 383 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HinfI | GANTC | 2 cut(s) | 4, 266 |
| HphI | GGTGA | 3 cut(s) | 117, 312, 371 |
| Hpy166II | GTNNAC | 1 cut(s) | 368 |
| Hpy188III | TCNNGA | 1 cut(s) | 488 |
| Hpy8I | GTNNAC | 1 cut(s) | 368 |
| HpyAV | CCTTC | 1 cut(s) | 356 |
| HpyCH4III | ACNGT | 2 cut(s) | 107, 205 |
| HpyCH4V | TGCA | 2 cut(s) | 190, 199 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 196 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| Hsp92II | CATG | 4 cut(s) | 11, 194, 301, 383 |
| HspAI | GCGC | 1 cut(s) | 146 |
| LpnPI | CCDG | 6 cut(s) | 28, 48, 75, 240, 255, 420 |
| LweI | GCATC | 1 cut(s) | 505 |
| MabI | ACCWGGT | 1 cut(s) | 14 |
| MaeIII | GTNAC | 4 cut(s) | 10, 69, 107, 171 |
| MluCI | AATT | 6 cut(s) | 211, 388, 422, 427, 460, 496 |
| MnlI | CCTC | 6 cut(s) | 108, 129, 138, 159, 231, 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 192 |
| MseI | TTAA | 1 cut(s) | 425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| MspR9I | CCNGG | 2 cut(s) | 16, 63 |
| MvaI | CCWGG | 2 cut(s) | 16, 63 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 196 |
| NdeI | CATATG | 1 cut(s) | 285 |
| NlaIII | CATG | 4 cut(s) | 11, 194, 301, 383 |
| NlaIV | GGNNCC | 2 cut(s) | 87, 274 |
| NmuCI | GTSAC | 3 cut(s) | 10, 69, 107 |
| NsiI | ATGCAT | 1 cut(s) | 192 |
| NspI | RCATGY | 1 cut(s) | 194 |
| PaeI | GCATGC | 1 cut(s) | 194 |
| PfeI | GAWTC | 2 cut(s) | 4, 266 |
| PpuMI | RGGWCCY | 1 cut(s) | 41 |
| Psp5II | RGGWCCY | 1 cut(s) | 41 |
| Psp6I | CCWGG | 2 cut(s) | 14, 61 |
| PspGI | CCWGG | 2 cut(s) | 14, 61 |
| PspN4I | GGNNCC | 2 cut(s) | 87, 274 |
| PspPI | GGNCC | 1 cut(s) | 41 |
| PspPPI | RGGWCCY | 1 cut(s) | 41 |
| RsaI | GTAC | 1 cut(s) | 474 |
| RsaNI | GTAC | 1 cut(s) | 473 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| SaqAI | TTAA | 1 cut(s) | 425 |
| Sau96I | GGNCC | 1 cut(s) | 41 |
| ScrFI | CCNGG | 2 cut(s) | 16, 63 |
| SetI | ASST | 9 cut(s) | 17, 46, 130, 223, 232, 247, 325, 367, 453 |
| SexAI | ACCWGGT | 1 cut(s) | 14 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| SinI | GGWCC | 1 cut(s) | 41 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| SphI | GCATGC | 1 cut(s) | 194 |
| Sse9I | AATT | 6 cut(s) | 211, 388, 422, 427, 460, 496 |
| StyD4I | CCNGG | 2 cut(s) | 14, 61 |
| StyI | CCWWGG | 2 cut(s) | 312, 519 |
| TaaI | ACNGT | 2 cut(s) | 107, 205 |
| TaqII | GACCGA | 1 cut(s) | 278 |
| TasI | AATT | 6 cut(s) | 211, 388, 422, 427, 460, 496 |
| TatI | WGTACW | 1 cut(s) | 472 |
| TfiI | GAWTC | 2 cut(s) | 4, 266 |
| Tru1I | TTAA | 1 cut(s) | 425 |
| Tru9I | TTAA | 1 cut(s) | 425 |
| TscAI | CASTG | 2 cut(s) | 208, 340 |
| TseFI | GTSAC | 3 cut(s) | 10, 69, 107 |
| Tsp45I | GTSAC | 3 cut(s) | 10, 69, 107 |
| TspDTI | ATGAA | 4 cut(s) | 17, 126, 314, 389 |
| TspRI | CASTG | 2 cut(s) | 208, 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 41 |
| XapI | RAATTY | 2 cut(s) | 388, 427 |
| XceI | RCATGY | 1 cut(s) | 194 |
| Zsp2I | ATGCAT | 1 cut(s) | 192 |