FvH4_5g20624

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000034
Physical Location & Seq
Reverse (-)
12255194 .. 12256732
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20624.t1

Sequence Viewer

Length: 867 bp
ATGGCCGCTCCGTCTCCGACCGCCGCCGCCGCCGCCTATCCCAAGACGCCGGACGTTCTCTTCGCCTCCATCACCGGCCTCATGCCCATACGTCTCGACTCCTCCAACTTCATCATCTGGAGGTATCTGATGACCACCAACTTCAGAGCTCACAACCTCCTCGGCTACGTCGACGGCTCCATCACCCCGCCGGAGAAGTTCCTCCTCAACGACGCCGGCGAGCCGACCTCCGCGATCAACCCTAGCTACTCCACCTGGCTGGCGCACGACGCCGGCGTCCAGGTCCTGATCCACGCCACGCTCTCCAACACGGCTCTCAACCACATCATCGGCTGCGACACGGCGCGTGACCTCTGGCTCAAGCTGGAGGAGAGTTGCTCGTCTCTGTTGAACTTCCACGTCACGAAGTACAGGTCCGAGTTGGAGAGGAGCACCAAAGGGAGCGACTCGGTTCATGCTTATGTGAACAGAATTCAGGAGATTAGGGACACGCTTACCGGTTTCGATGTGGTGATTGATGACTCGGAGATGATTGCTCAGGCTATGAAGGGGTTGCCGACTGAGTACAATCCGTTTCGGGCCTCGGTGGCGGCCAGGACTGAGCCTCTGACGTTGGATGGGTTCTGTGTGCTGTTGCTGCAGGAGGAGGAGGCATTGAGAGCAAGGAATCAGTATCAGTTTCCGCAGTTTGCGGATGCGCAGTGGAGTTCGAATCAGTGTCAGATTTGCAATGAGGCTGGGCATACTGCTTTGGTTTGTCCTCACAGAATGGATTTCACATACCAGGGCGTCTCTGTAAGAAATAGGTTGAAAGAGAATGGTGCTAATATGAAAGATTTAAAGGTTATGTTTGAAGGCATTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

289

Amino Acids

32.07

Weight (kDa)

5.48

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 27 - 65 3.2e-06 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 47 - 222 2.8e-16 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
Acc16I TGCGCA 1 cut(s) 699
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 233, 346
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 2 cut(s) 3, 591
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 127
AcyI GRCGYC 5 cut(s) 47, 213, 270, 276, 789
AfaI GTAC 2 cut(s) 410, 566
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 3 cut(s) 391, 811, 854
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 4 cut(s) 254, 279, 593, 783
AluBI AGCT 3 cut(s) 149, 246, 364
AluI AGCT 3 cut(s) 149, 246, 364
Alw21I GWGCWC 2 cut(s) 151, 434
Alw26I GTCTC 4 cut(s) 18, 98, 387, 796
AlwI GGATC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 4 cut(s) 3, 76, 579, 591
ApeKI GCWGC 2 cut(s) 333, 637
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 398, 430
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 3 cut(s) 265, 346, 700
AspS9I GGNCC 3 cut(s) 283, 414, 579
AsuHPI GGTGA 3 cut(s) 64, 175, 523
AsuII TTCGAA 1 cut(s) 710
AvaII GGWCC 2 cut(s) 283, 414
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 151, 434
BbvI GCAGC 2 cut(s) 320, 624
BccI CCATC 3 cut(s) 77, 188, 611
BceAI ACGGC 3 cut(s) 190, 327, 357
BciT130I CCWGG 4 cut(s) 256, 281, 595, 785
BcoDI GTCTC 4 cut(s) 18, 98, 387, 796
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 638
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 8 cut(s) 6, 24, 27, 30, 33, 334, 591, 638
BlsI GCNGC 8 cut(s) 7, 25, 28, 31, 34, 335, 592, 639
Bme1390I CCNGG 4 cut(s) 256, 281, 595, 785
Bme18I GGWCC 2 cut(s) 283, 414
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 283, 414, 579
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 4 cut(s) 256, 281, 595, 785
BmsI GCATC 1 cut(s) 685
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 362, 394
BpmI CTGGAG 2 cut(s) 139, 386
Bpu10I CCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 344
BsaHI GRCGYC 5 cut(s) 47, 213, 270, 276, 789
BsaJI CCNNGG 3 cut(s) 160, 582, 784
BsaWI WCCGGW 1 cut(s) 497
Bse118I RCCGGY 4 cut(s) 74, 215, 272, 497
Bse3DI GCAATG 1 cut(s) 736
BseBI CCWGG 4 cut(s) 256, 281, 595, 785
BseDI CCNNGG 3 cut(s) 160, 582, 784
BseGI GGATG 2 cut(s) 622, 700
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 3 cut(s) 551, 552, 591
BseRI GAGGAG 7 cut(s) 91, 149, 194, 383, 442, 659, 662
BseXI GCAGC 2 cut(s) 320, 624
BseYI CCCAGC 1 cut(s) 737
Bsh1236I CGCG 2 cut(s) 233, 346
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 4 cut(s) 5, 78, 581, 593
BshTI ACCGGT 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 151, 434
BsiSI CCGG 6 cut(s) 50, 75, 191, 216, 273, 498
BslFI GGGAC 1 cut(s) 500
BsmAI GTCTC 4 cut(s) 18, 98, 387, 796
BsmBI CGTCTC 4 cut(s) 18, 98, 387, 796
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 858
BsnI GGCC 4 cut(s) 5, 78, 581, 593
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 151, 434
Bsp143I GATC 2 cut(s) 234, 288
BspANI GGCC 4 cut(s) 5, 78, 581, 593
BspCNI CTCAG 3 cut(s) 550, 553, 592
BspFNI CGCG 2 cut(s) 233, 346
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 642
BspPI GGATC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 736
BsrFI RCCGGY 4 cut(s) 74, 215, 272, 497
BssAI RCCGGY 4 cut(s) 74, 215, 272, 497
BssECI CCNNGG 3 cut(s) 160, 582, 784
BssMI GATC 2 cut(s) 234, 288
BssNI GRCGYC 5 cut(s) 47, 213, 270, 276, 789
Bst2UI CCWGG 4 cut(s) 256, 281, 595, 785
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 5 cut(s) 47, 213, 270, 276, 789
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 4 cut(s) 217, 221, 261, 274
BstDEI CTNAG 3 cut(s) 537, 561, 600
BstF5I GGATG 2 cut(s) 622, 700
BstFNI CGCG 2 cut(s) 233, 346
BstHHI GCGC 3 cut(s) 265, 346, 700
BstKTI GATC 2 cut(s) 237, 291
BstMAI GTCTC 4 cut(s) 18, 98, 387, 796
BstMBI GATC 2 cut(s) 234, 288
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 6 cut(s) 29, 32, 269, 587, 637, 659
BstNI CCWGG 4 cut(s) 256, 281, 595, 785
BstSCI CCNGG 4 cut(s) 254, 279, 593, 783
BstSFI CTRYAG 1 cut(s) 638
BstUI CGCG 2 cut(s) 233, 346
BstV1I GCAGC 2 cut(s) 320, 624
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuRI GGCC 4 cut(s) 5, 78, 581, 593
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 622, 700
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 707, 722
Cac8I GCNNGC 4 cut(s) 217, 221, 261, 274
CaiI CAGNNNCTG 1 cut(s) 286
CfoI GCGC 3 cut(s) 265, 346, 700
Cfr10I RCCGGY 4 cut(s) 74, 215, 272, 497
Cfr13I GGNCC 3 cut(s) 283, 414, 579
CseI GACGC 5 cut(s) 55, 221, 265, 278, 778
Csp6I GTAC 2 cut(s) 409, 565
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 2 cut(s) 82, 455
CviQI GTAC 2 cut(s) 409, 565
DdeI CTNAG 3 cut(s) 537, 561, 600
DpnI GATC 2 cut(s) 236, 290
DpnII GATC 2 cut(s) 234, 288
DraI TTTAAA 1 cut(s) 840
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 2 cut(s) 3, 591
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 283, 414
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 471
EcoRII CCWGG 4 cut(s) 254, 279, 593, 783
EcoT38I GRGCYC 1 cut(s) 151
Esp3I CGTCTC 4 cut(s) 18, 98, 387, 796
FaeI CATG 2 cut(s) 85, 458
FaiI YATR 9 cut(s) 83, 89, 456, 462, 545, 744, 781, 830, 848
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 81, 454
FauI CCCGC 1 cut(s) 195
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 8 cut(s) 6, 24, 27, 30, 33, 334, 591, 638
FokI GGATG 2 cut(s) 629, 707
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 8 cut(s) 6, 24, 27, 30, 33, 334, 591, 638
FspBI CTAG 1 cut(s) 243
FspI TGCGCA 1 cut(s) 699
GlaI GCGC 3 cut(s) 264, 345, 699
GluI GCNGC 8 cut(s) 6, 24, 27, 30, 33, 334, 591, 638
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 2 cut(s) 139, 386
HaeIII GGCC 4 cut(s) 5, 78, 581, 593
HapII CCGG 6 cut(s) 50, 75, 191, 216, 273, 498
HgaI GACGC 5 cut(s) 55, 221, 265, 278, 778
HhaI GCGC 3 cut(s) 265, 346, 700
Hin1I GRCGYC 5 cut(s) 47, 213, 270, 276, 789
Hin1II CATG 2 cut(s) 85, 458
Hin6I GCGC 3 cut(s) 263, 344, 698
HinP1I GCGC 3 cut(s) 263, 344, 698
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 98, 446, 521, 667, 712
HpaII CCGG 6 cut(s) 50, 75, 191, 216, 273, 498
HphI GGTGA 3 cut(s) 64, 175, 523
Hpy166II GTNNAC 2 cut(s) 172, 466
Hpy188I TCNGA 7 cut(s) 18, 129, 146, 418, 526, 609, 723
Hpy188III TCNNGA 5 cut(s) 95, 118, 286, 403, 476
Hpy8I GTNNAC 2 cut(s) 172, 466
Hpy99I CGWCG 4 cut(s) 173, 176, 215, 272
HpyAV CCTTC 2 cut(s) 541, 848
HpyCH4IV ACGT 5 cut(s) 54, 91, 168, 399, 611
HpyCH4V TGCA 2 cut(s) 640, 729
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 32, 269, 587, 637, 659
HpyF3I CTNAG 3 cut(s) 537, 561, 600
HpySE526I ACGT 5 cut(s) 54, 91, 168, 399, 611
Hsp92I GRCGYC 5 cut(s) 47, 213, 270, 276, 789
Hsp92II CATG 2 cut(s) 85, 458
HspAI GCGC 3 cut(s) 263, 344, 698
KroI GCCGGC 2 cut(s) 215, 272
KroNI GCCGGC 2 cut(s) 217, 274
Kzo9I GATC 2 cut(s) 234, 288
LmnI GCTCC 4 cut(s) 13, 182, 429, 441
Lsp1109I GCAGC 2 cut(s) 320, 624
LweI GCATC 1 cut(s) 685
MaeI CTAG 1 cut(s) 243
MaeII ACGT 5 cut(s) 54, 91, 168, 399, 611
MaeIII GTNAC 2 cut(s) 347, 400
MalI GATC 2 cut(s) 236, 290
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 234, 288
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 151, 434
MluCI AATT 1 cut(s) 471
MlyI GAGTC 3 cut(s) 92, 440, 515
MmeI TCCRAC 5 cut(s) 41, 129, 330, 402, 594
MreI CGCCGGCG 2 cut(s) 215, 272
MroNI GCCGGC 2 cut(s) 215, 272
MroXI GAANNNNTTC 1 cut(s) 858
MseI TTAA 1 cut(s) 839
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 6 cut(s) 50, 75, 191, 216, 273, 498
MspR9I CCNGG 4 cut(s) 256, 281, 595, 785
Mva1269I GAATGC 1 cut(s) 858
MvaI CCWGG 4 cut(s) 256, 281, 595, 785
MvnI CGCG 2 cut(s) 233, 346
MwoI GCNNNNNNNGC 6 cut(s) 29, 32, 269, 587, 637, 659
NaeI GCCGGC 2 cut(s) 217, 274
NdeII GATC 2 cut(s) 234, 288
NgoMIV GCCGGC 2 cut(s) 215, 272
NlaIII CATG 2 cut(s) 85, 458
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 347, 400
NsbI TGCGCA 1 cut(s) 699
NspV TTCGAA 1 cut(s) 710
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 216, 273
PctI GAATGC 1 cut(s) 858
PdiI GCCGGC 2 cut(s) 217, 274
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 2 cut(s) 667, 712
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 8 cut(s) 7, 25, 28, 31, 34, 335, 592, 639
PleI GAGTC 3 cut(s) 92, 440, 515
PpsI GAGTC 3 cut(s) 92, 440, 515
PpuMI RGGWCCY 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 4 cut(s) 254, 279, 593, 783
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 4 cut(s) 254, 279, 593, 783
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 3 cut(s) 283, 414, 579
PspPPI RGGWCCY 1 cut(s) 283
PstI CTGCAG 1 cut(s) 642
PstNI CAGNNNCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 410, 566
RsaNI GTAC 2 cut(s) 409, 565
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 151
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 839
SatI GCNGC 8 cut(s) 6, 24, 27, 30, 33, 334, 591, 638
Sau3AI GATC 2 cut(s) 234, 288
Sau96I GGNCC 3 cut(s) 283, 414, 579
SchI GAGTC 3 cut(s) 92, 440, 515
ScrFI CCNGG 4 cut(s) 256, 281, 595, 785
SduI GDGCHC 2 cut(s) 151, 434
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 638
SfuI TTCGAA 1 cut(s) 710
SgrAI CRCCGGYG 2 cut(s) 215, 272
SgrDI CGTCGACG 1 cut(s) 170
SinI GGWCC 2 cut(s) 283, 414
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 4 cut(s) 254, 279, 593, 783
TaiI ACGT 5 cut(s) 57, 94, 171, 402, 614
TaqI TCGA 4 cut(s) 96, 171, 504, 710
TasI AATT 1 cut(s) 471
TatI WGTACW 2 cut(s) 408, 564
TauI GCSGC 6 cut(s) 8, 26, 29, 32, 35, 593
TfiI GAWTC 2 cut(s) 667, 712
Tru1I TTAA 1 cut(s) 839
Tru9I TTAA 1 cut(s) 839
TscAI CASTG 2 cut(s) 707, 722
TseFI GTSAC 2 cut(s) 347, 400
TseI GCWGC 2 cut(s) 333, 637
Tsp45I GTSAC 2 cut(s) 347, 400
TspDTI ATGAA 4 cut(s) 100, 443, 560, 845
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 707, 722
VpaK11BI GGWCC 2 cut(s) 283, 414
XapI RAATTY 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.