transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 144 | 9.8e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 152 |
| AclWI | GGATC | 2 cut(s) | 655, 940 |
| AcoI | YGGCCR | 1 cut(s) | 1222 |
| AcsI | RAATTY | 4 cut(s) | 35, 338, 619, 1206 |
| AcuI | CTGAAG | 1 cut(s) | 885 |
| AfaI | GTAC | 2 cut(s) | 227, 691 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 213, 443, 587, 1094, 1124 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AflIII | ACRYGT | 2 cut(s) | 265, 789 |
| AgsI | TTSAA | 6 cut(s) | 119, 302, 323, 343, 460, 1292 |
| AjnI | CCWGG | 3 cut(s) | 390, 580, 1312 |
| AluBI | AGCT | 5 cut(s) | 110, 296, 714, 982, 1281 |
| AluI | AGCT | 5 cut(s) | 110, 296, 714, 982, 1281 |
| Alw21I | GWGCWC | 1 cut(s) | 145 |
| Alw26I | GTCTC | 3 cut(s) | 517, 778, 1092 |
| Alw44I | GTGCAC | 1 cut(s) | 141 |
| AlwI | GGATC | 2 cut(s) | 655, 940 |
| AoxI | GGCC | 1 cut(s) | 1222 |
| ApaLI | GTGCAC | 1 cut(s) | 141 |
| ApeKI | GCWGC | 3 cut(s) | 110, 479, 1242 |
| ApoI | RAATTY | 4 cut(s) | 35, 338, 619, 1206 |
| AseI | ATTAAT | 1 cut(s) | 747 |
| AspS9I | GGNCC | 1 cut(s) | 719 |
| AsuC2I | CCSGG | 1 cut(s) | 438 |
| AsuHPI | GGTGA | 4 cut(s) | 57, 323, 1038, 1250 |
| AvaII | GGWCC | 1 cut(s) | 719 |
| BaeGI | GKGCMC | 1 cut(s) | 145 |
| BalI | TGGCCA | 1 cut(s) | 1224 |
| BanI | GGYRCC | 1 cut(s) | 152 |
| Bbv12I | GWGCWC | 1 cut(s) | 145 |
| BbvI | GCAGC | 3 cut(s) | 97, 466, 1254 |
| BccI | CCATC | 5 cut(s) | 38, 70, 80, 703, 1088 |
| BciT130I | CCWGG | 3 cut(s) | 392, 582, 1314 |
| BclI | TGATCA | 1 cut(s) | 843 |
| BcnI | CCSGG | 1 cut(s) | 438 |
| BcoDI | GTCTC | 3 cut(s) | 517, 778, 1092 |
| BfaI | CTAG | 2 cut(s) | 801, 1278 |
| BfmI | CTRYAG | 1 cut(s) | 735 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 3 cut(s) | 111, 480, 1243 |
| BlsI | GCNGC | 3 cut(s) | 112, 481, 1244 |
| BmcAI | AGTACT | 1 cut(s) | 691 |
| Bme1390I | CCNGG | 4 cut(s) | 392, 438, 582, 1314 |
| Bme18I | GGWCC | 1 cut(s) | 719 |
| BmgT120I | GGNCC | 1 cut(s) | 719 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 4 cut(s) | 392, 438, 582, 1314 |
| BmsI | GCATC | 3 cut(s) | 191, 545, 1013 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 758, 790, 1240, 1272 |
| BpmI | CTGGAG | 2 cut(s) | 760, 1287 |
| BpuEI | CTTGAG | 3 cut(s) | 218, 499, 1074 |
| BpuMI | CCSGG | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 2 cut(s) | 437, 473 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 155, 185, 209, 239, 1151, 1181 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 213, 443, 587, 1094, 1124 |
| Bse1I | ACTGG | 2 cut(s) | 592, 864 |
| Bse3DI | GCAATG | 2 cut(s) | 1183, 1320 |
| BseBI | CCWGG | 3 cut(s) | 392, 582, 1314 |
| BseDI | CCNNGG | 2 cut(s) | 437, 473 |
| BseGI | GGATG | 3 cut(s) | 206, 400, 539 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 213, 443, 587, 1094, 1124 |
| BseMI | GCAATG | 2 cut(s) | 1183, 1320 |
| BseMII | CTCAG | 8 cut(s) | 84, 168, 249, 276, 665, 756, 1010, 1070 |
| BseNI | ACTGG | 2 cut(s) | 592, 864 |
| BseRI | GAGGAG | 2 cut(s) | 163, 909 |
| BseSI | GKGCMC | 1 cut(s) | 145 |
| BseXI | GCAGC | 3 cut(s) | 97, 466, 1254 |
| BseYI | CCCAGC | 1 cut(s) | 949 |
| BsgI | GTGCAG | 2 cut(s) | 96, 1261 |
| BshFI | GGCC | 1 cut(s) | 1224 |
| BshNI | GGYRCC | 1 cut(s) | 152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 145 |
| BsiSI | CCGG | 1 cut(s) | 437 |
| BslFI | GGGAC | 1 cut(s) | 103 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 213, 443, 587, 1094, 1124 |
| BsmAI | GTCTC | 3 cut(s) | 517, 778, 1092 |
| BsmFI | GGGAC | 1 cut(s) | 103 |
| BsmI | GAATGC | 1 cut(s) | 1298 |
| BsnI | GGCC | 1 cut(s) | 1224 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| Bsp143I | GATC | 3 cut(s) | 647, 843, 945 |
| Bsp19I | CCATGG | 1 cut(s) | 473 |
| BspANI | GGCC | 1 cut(s) | 1224 |
| BspCNI | CTCAG | 8 cut(s) | 85, 169, 250, 277, 664, 757, 1009, 1069 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspPI | GGATC | 2 cut(s) | 655, 940 |
| BspQI | GCTCTTC | 1 cut(s) | 123 |
| BspT107I | GGYRCC | 1 cut(s) | 152 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrDI | GCAATG | 2 cut(s) | 1183, 1320 |
| BsrI | ACTGG | 2 cut(s) | 592, 864 |
| BssECI | CCNNGG | 2 cut(s) | 437, 473 |
| BssMI | GATC | 3 cut(s) | 647, 843, 945 |
| BssT1I | CCWWGG | 1 cut(s) | 473 |
| Bst2UI | CCWGG | 3 cut(s) | 392, 582, 1314 |
| Bst4CI | ACNGT | 3 cut(s) | 488, 1041, 1113 |
| Bst6I | CTCTTC | 3 cut(s) | 57, 123, 1126 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 4 cut(s) | 29, 729, 782, 1002 |
| BstDEI | CTNAG | 9 cut(s) | 93, 177, 258, 285, 371, 651, 765, 996, 1056 |
| BstDSI | CCRYGG | 1 cut(s) | 473 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 211 |
| BstF5I | GGATG | 3 cut(s) | 206, 400, 539 |
| BstKTI | GATC | 3 cut(s) | 650, 846, 948 |
| BstMAI | GTCTC | 3 cut(s) | 517, 778, 1092 |
| BstMBI | GATC | 3 cut(s) | 647, 843, 945 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 488, 575, 1302 |
| BstNI | CCWGG | 3 cut(s) | 392, 582, 1314 |
| BstNSI | RCATGY | 6 cut(s) | 269, 731, 784, 793, 935, 1335 |
| BstSCI | CCNGG | 4 cut(s) | 390, 436, 580, 1312 |
| BstSFI | CTRYAG | 1 cut(s) | 735 |
| BstSLI | GKGCMC | 1 cut(s) | 145 |
| BstV1I | GCAGC | 3 cut(s) | 97, 466, 1254 |
| BstX2I | RGATCY | 2 cut(s) | 647, 945 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1154 |
| BstYI | RGATCY | 2 cut(s) | 647, 945 |
| BsuRI | GGCC | 1 cut(s) | 1224 |
| BtgI | CCRYGG | 1 cut(s) | 473 |
| BtsCI | GGATG | 3 cut(s) | 206, 400, 539 |
| BtsI | GCAGTG | 3 cut(s) | 372, 825, 1227 |
| BtsIMutI | CAGTG | 6 cut(s) | 188, 372, 825, 871, 909, 1227 |
| Cac8I | GCNNGC | 4 cut(s) | 29, 729, 782, 1002 |
| Cfr13I | GGNCC | 1 cut(s) | 719 |
| CsiI | ACCWGGT | 1 cut(s) | 1312 |
| Csp6I | GTAC | 2 cut(s) | 226, 690 |
| CviQI | GTAC | 2 cut(s) | 226, 690 |
| DdeI | CTNAG | 9 cut(s) | 93, 177, 258, 285, 371, 651, 765, 996, 1056 |
| DpnI | GATC | 3 cut(s) | 649, 845, 947 |
| DpnII | GATC | 3 cut(s) | 647, 843, 945 |
| EaeI | YGGCCR | 1 cut(s) | 1222 |
| Eam1104I | CTCTTC | 3 cut(s) | 57, 123, 1126 |
| EarI | CTCTTC | 3 cut(s) | 57, 123, 1126 |
| Eco130I | CCWWGG | 1 cut(s) | 473 |
| Eco47I | GGWCC | 1 cut(s) | 719 |
| Eco57I | CTGAAG | 1 cut(s) | 885 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 211 |
| EcoRII | CCWGG | 3 cut(s) | 390, 580, 1312 |
| EcoT14I | CCWWGG | 1 cut(s) | 473 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 729 |
| ErhI | CCWWGG | 1 cut(s) | 473 |
| FaqI | GGGAC | 1 cut(s) | 103 |
| FbaI | TGATCA | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 3 cut(s) | 111, 480, 1243 |
| FokI | GGATG | 3 cut(s) | 213, 407, 526 |
| Fsp4HI | GCNGC | 3 cut(s) | 111, 480, 1243 |
| FspBI | CTAG | 2 cut(s) | 801, 1278 |
| GluI | GCNGC | 3 cut(s) | 111, 480, 1243 |
| GsaI | CCCAGC | 1 cut(s) | 953 |
| GsuI | CTGGAG | 2 cut(s) | 760, 1287 |
| HaeIII | GGCC | 1 cut(s) | 1224 |
| HapII | CCGG | 1 cut(s) | 437 |
| HinfI | GANTC | 7 cut(s) | 19, 231, 314, 703, 958, 1023, 1100 |
| HpaII | CCGG | 1 cut(s) | 437 |
| HphI | GGTGA | 4 cut(s) | 57, 323, 1038, 1250 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 143, 422 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 178, 259, 388, 523, 766, 1030, 1059 |
| Hpy188III | TCNNGA | 3 cut(s) | 343, 1091, 1266 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 143, 422 |
| HpyAV | CCTTC | 1 cut(s) | 1078 |
| HpyCH4III | ACNGT | 3 cut(s) | 488, 1041, 1113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 488, 575, 1302 |
| HpyF3I | CTNAG | 9 cut(s) | 93, 177, 258, 285, 371, 651, 765, 996, 1056 |
| Ksp22I | TGATCA | 1 cut(s) | 843 |
| Kzo9I | GATC | 3 cut(s) | 647, 843, 945 |
| LguI | GCTCTTC | 1 cut(s) | 123 |
| LmnI | GCTCC | 2 cut(s) | 583, 835 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 466, 1254 |
| LweI | GCATC | 3 cut(s) | 191, 545, 1013 |
| MabI | ACCWGGT | 1 cut(s) | 1312 |
| MaeI | CTAG | 2 cut(s) | 801, 1278 |
| MaeIII | GTNAC | 4 cut(s) | 288, 1136, 1211, 1316 |
| MalI | GATC | 3 cut(s) | 649, 845, 947 |
| MboI | GATC | 3 cut(s) | 647, 843, 945 |
| MboII | GAAGA | 4 cut(s) | 44, 140, 891, 1113 |
| MflI | RGATCY | 2 cut(s) | 647, 945 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| MlsI | TGGCCA | 1 cut(s) | 1224 |
| MluCI | AATT | 7 cut(s) | 35, 338, 359, 526, 619, 760, 1206 |
| MluNI | TGGCCA | 1 cut(s) | 1224 |
| MlyI | GAGTC | 3 cut(s) | 28, 225, 1094 |
| Mox20I | TGGCCA | 1 cut(s) | 1224 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 729 |
| MscI | TGGCCA | 1 cut(s) | 1224 |
| MseI | TTAA | 7 cut(s) | 78, 279, 335, 399, 407, 507, 747 |
| MslI | CAYNNNNRTG | 3 cut(s) | 845, 1152, 1336 |
| Msp20I | TGGCCA | 1 cut(s) | 1224 |
| MspA1I | CMGCKG | 1 cut(s) | 110 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspI | CCGG | 1 cut(s) | 437 |
| MspR9I | CCNGG | 4 cut(s) | 392, 438, 582, 1314 |
| Mva1269I | GAATGC | 1 cut(s) | 1298 |
| MvaI | CCWGG | 3 cut(s) | 392, 582, 1314 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 488, 575, 1302 |
| NciI | CCSGG | 1 cut(s) | 438 |
| NcoI | CCATGG | 1 cut(s) | 473 |
| NdeII | GATC | 3 cut(s) | 647, 843, 945 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NmuCI | GTSAC | 2 cut(s) | 1211, 1316 |
| NsiI | ATGCAT | 2 cut(s) | 6, 729 |
| NspI | RCATGY | 6 cut(s) | 269, 731, 784, 793, 935, 1335 |
| PaeI | GCATGC | 2 cut(s) | 731, 784 |
| PciI | ACATGT | 2 cut(s) | 265, 789 |
| PciSI | GCTCTTC | 1 cut(s) | 123 |
| PctI | GAATGC | 1 cut(s) | 1298 |
| PfeI | GAWTC | 4 cut(s) | 314, 703, 958, 1023 |
| PfoI | TCCNGGA | 1 cut(s) | 580 |
| PkrI | GCNGC | 3 cut(s) | 112, 481, 1244 |
| PleI | GAGTC | 3 cut(s) | 27, 225, 1094 |
| PpsI | GAGTC | 3 cut(s) | 27, 225, 1094 |
| PscI | ACATGT | 2 cut(s) | 265, 789 |
| PshBI | ATTAAT | 1 cut(s) | 747 |
| Psp6I | CCWGG | 3 cut(s) | 390, 580, 1312 |
| PspFI | CCCAGC | 1 cut(s) | 949 |
| PspGI | CCWGG | 3 cut(s) | 390, 580, 1312 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PspPI | GGNCC | 1 cut(s) | 719 |
| PsuI | RGATCY | 2 cut(s) | 647, 945 |
| PvuII | CAGCTG | 1 cut(s) | 110 |
| RsaI | GTAC | 2 cut(s) | 227, 691 |
| RsaNI | GTAC | 2 cut(s) | 226, 690 |
| RseI | CAYNNNNRTG | 3 cut(s) | 845, 1152, 1336 |
| SapI | GCTCTTC | 1 cut(s) | 123 |
| SaqAI | TTAA | 7 cut(s) | 78, 279, 335, 399, 407, 507, 747 |
| SatI | GCNGC | 3 cut(s) | 111, 480, 1243 |
| Sau3AI | GATC | 3 cut(s) | 647, 843, 945 |
| Sau96I | GGNCC | 1 cut(s) | 719 |
| ScaI | AGTACT | 1 cut(s) | 691 |
| SchI | GAGTC | 3 cut(s) | 28, 225, 1094 |
| ScrFI | CCNGG | 4 cut(s) | 392, 438, 582, 1314 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SexAI | ACCWGGT | 1 cut(s) | 1312 |
| SfaNI | GCATC | 3 cut(s) | 191, 545, 1013 |
| SfcI | CTRYAG | 1 cut(s) | 735 |
| SinI | GGWCC | 1 cut(s) | 719 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 845, 1152, 1336 |
| SmlI | CTYRAG | 4 cut(s) | 233, 278, 514, 1089 |
| SmoI | CTYRAG | 4 cut(s) | 233, 278, 514, 1089 |
| SphI | GCATGC | 2 cut(s) | 731, 784 |
| Sse9I | AATT | 7 cut(s) | 35, 338, 359, 526, 619, 760, 1206 |
| SspMI | CTAG | 2 cut(s) | 801, 1278 |
| StyD4I | CCNGG | 4 cut(s) | 390, 436, 580, 1312 |
| StyI | CCWWGG | 1 cut(s) | 473 |
| TaaI | ACNGT | 3 cut(s) | 488, 1041, 1113 |
| TasI | AATT | 7 cut(s) | 35, 338, 359, 526, 619, 760, 1206 |
| TatI | WGTACW | 1 cut(s) | 689 |
| TfiI | GAWTC | 4 cut(s) | 314, 703, 958, 1023 |
| Tru1I | TTAA | 7 cut(s) | 78, 279, 335, 399, 407, 507, 747 |
| Tru9I | TTAA | 7 cut(s) | 78, 279, 335, 399, 407, 507, 747 |
| TscAI | CASTG | 6 cut(s) | 195, 372, 832, 871, 909, 1234 |
| TseFI | GTSAC | 2 cut(s) | 1211, 1316 |
| TseI | GCWGC | 3 cut(s) | 110, 479, 1242 |
| Tsp45I | GTSAC | 2 cut(s) | 1211, 1316 |
| TspDTI | ATGAA | 5 cut(s) | 716, 786, 899, 971, 1060 |
| TspRI | CASTG | 6 cut(s) | 195, 372, 832, 871, 909, 1234 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VneI | GTGCAC | 1 cut(s) | 141 |
| VpaK11BI | GGWCC | 1 cut(s) | 719 |
| VspI | ATTAAT | 1 cut(s) | 747 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 211 |
| XapI | RAATTY | 4 cut(s) | 35, 338, 619, 1206 |
| XceI | RCATGY | 6 cut(s) | 269, 731, 784, 793, 935, 1335 |
| XspI | CTAG | 2 cut(s) | 801, 1278 |
| ZrmI | AGTACT | 1 cut(s) | 691 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 729 |