gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 56 - 201 | 9.1e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 610, 912 |
| Acc65I | GGTACC | 1 cut(s) | 953 |
| AccB1I | GGYRCC | 1 cut(s) | 953 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 950 |
| AccBSI | CCGCTC | 1 cut(s) | 1459 |
| AciI | CCGC | 3 cut(s) | 134, 339, 1457 |
| AclI | AACGTT | 1 cut(s) | 966 |
| AcsI | RAATTY | 3 cut(s) | 301, 1139, 1362 |
| AfaI | GTAC | 5 cut(s) | 365, 506, 818, 926, 955 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 845, 884, 950 |
| AgsI | TTSAA | 6 cut(s) | 9, 71, 907, 1100, 1153, 1355 |
| AjnI | CCWGG | 1 cut(s) | 1468 |
| AluBI | AGCT | 4 cut(s) | 349, 437, 533, 1430 |
| AluI | AGCT | 4 cut(s) | 349, 437, 533, 1430 |
| AoxI | GGCC | 1 cut(s) | 490 |
| ApeKI | GCWGC | 3 cut(s) | 346, 1319, 1427 |
| ApoI | RAATTY | 3 cut(s) | 301, 1139, 1362 |
| Asp718I | GGTACC | 1 cut(s) | 953 |
| AspA2I | CCTAGG | 1 cut(s) | 1253 |
| AsuHPI | GGTGA | 6 cut(s) | 160, 322, 392, 818, 926, 1148 |
| AvrII | CCTAGG | 1 cut(s) | 1253 |
| BanI | GGYRCC | 1 cut(s) | 953 |
| BbsI | GAAGAC | 1 cut(s) | 758 |
| BbvI | GCAGC | 3 cut(s) | 358, 1331, 1439 |
| BccI | CCATC | 3 cut(s) | 110, 911, 1082 |
| BciT130I | CCWGG | 1 cut(s) | 1470 |
| BciVI | GTATCC | 1 cut(s) | 101 |
| BclI | TGATCA | 2 cut(s) | 427, 525 |
| BfaI | CTAG | 5 cut(s) | 246, 330, 1041, 1128, 1254 |
| BfuAI | ACCTGC | 2 cut(s) | 610, 912 |
| BfuI | GTATCC | 1 cut(s) | 101 |
| BisI | GCNGC | 5 cut(s) | 339, 347, 1320, 1428, 1457 |
| BlnI | CCTAGG | 1 cut(s) | 1253 |
| BlsI | GCNGC | 5 cut(s) | 340, 348, 1321, 1429, 1458 |
| Bme1390I | CCNGG | 1 cut(s) | 1470 |
| BmiI | GGNNCC | 3 cut(s) | 696, 717, 955 |
| BmrFI | CCNGG | 1 cut(s) | 1470 |
| BmsI | GCATC | 3 cut(s) | 157, 746, 1348 |
| BpiI | GAAGAC | 1 cut(s) | 758 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1234, 1266 |
| BpmI | CTGGAG | 2 cut(s) | 192, 927 |
| Bsa29I | ATCGAT | 1 cut(s) | 597 |
| BsaBI | GATNNNNATC | 1 cut(s) | 473 |
| BsaJI | CCNNGG | 2 cut(s) | 94, 1253 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 845, 884, 950 |
| Bse1I | ACTGG | 3 cut(s) | 944, 1030, 1138 |
| Bse3DI | GCAATG | 2 cut(s) | 717, 1422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 473 |
| BseBI | CCWGG | 1 cut(s) | 1470 |
| BseCI | ATCGAT | 1 cut(s) | 597 |
| BseDI | CCNNGG | 2 cut(s) | 94, 1253 |
| BseGI | GGATG | 1 cut(s) | 1448 |
| BseJI | GATNNNNATC | 1 cut(s) | 473 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 845, 884, 950 |
| BseMI | GCAATG | 2 cut(s) | 717, 1422 |
| BseMII | CTCAG | 3 cut(s) | 492, 548, 893 |
| BseNI | ACTGG | 3 cut(s) | 944, 1030, 1138 |
| BseRI | GAGGAG | 2 cut(s) | 599, 1390 |
| BseXI | GCAGC | 3 cut(s) | 358, 1331, 1439 |
| BsgI | GTGCAG | 2 cut(s) | 833, 1338 |
| BshFI | GGCC | 1 cut(s) | 492 |
| BshNI | GGYRCC | 1 cut(s) | 953 |
| BshVI | ATCGAT | 1 cut(s) | 597 |
| BslFI | GGGAC | 2 cut(s) | 1221, 1323 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 845, 884, 950 |
| BsmFI | GGGAC | 2 cut(s) | 1221, 1323 |
| BsmI | GAATGC | 1 cut(s) | 447 |
| BsnI | GGCC | 1 cut(s) | 492 |
| Bsp1407I | TGTACA | 1 cut(s) | 363 |
| Bsp143I | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| BspACI | CCGC | 3 cut(s) | 134, 339, 1457 |
| BspANI | GGCC | 1 cut(s) | 492 |
| BspCNI | CTCAG | 3 cut(s) | 493, 547, 892 |
| BspDI | ATCGAT | 1 cut(s) | 597 |
| BspLI | GGNNCC | 3 cut(s) | 696, 717, 955 |
| BspMI | ACCTGC | 2 cut(s) | 610, 912 |
| BspT107I | GGYRCC | 1 cut(s) | 953 |
| BsrBI | CCGCTC | 1 cut(s) | 1459 |
| BsrDI | GCAATG | 2 cut(s) | 717, 1422 |
| BsrGI | TGTACA | 1 cut(s) | 363 |
| BsrI | ACTGG | 3 cut(s) | 944, 1030, 1138 |
| BssECI | CCNNGG | 2 cut(s) | 94, 1253 |
| BssMI | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 1253 |
| Bst2UI | CCWGG | 1 cut(s) | 1470 |
| Bst4CI | ACNGT | 4 cut(s) | 564, 706, 821, 1316 |
| Bst6I | CTCTTC | 2 cut(s) | 459, 1186 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 82 |
| BstAUI | TGTACA | 1 cut(s) | 363 |
| BstDEI | CTNAG | 3 cut(s) | 501, 534, 879 |
| BstF5I | GGATG | 1 cut(s) | 1448 |
| BstKTI | GATC | 5 cut(s) | 335, 430, 528, 540, 601 |
| BstMBI | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 1203 |
| BstNI | CCWGG | 1 cut(s) | 1470 |
| BstSCI | CCNGG | 1 cut(s) | 1468 |
| BstV1I | GCAGC | 3 cut(s) | 358, 1331, 1439 |
| BstV2I | GAAGAC | 1 cut(s) | 758 |
| Bsu15I | ATCGAT | 1 cut(s) | 597 |
| BsuI | GTATCC | 1 cut(s) | 101 |
| BsuRI | GGCC | 1 cut(s) | 492 |
| BsuTUI | ATCGAT | 1 cut(s) | 597 |
| BtsCI | GGATG | 1 cut(s) | 1448 |
| BtsI | GCAGTG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 3 cut(s) | 231, 423, 1321 |
| BveI | ACCTGC | 2 cut(s) | 610, 912 |
| ClaI | ATCGAT | 1 cut(s) | 597 |
| Csp6I | GTAC | 5 cut(s) | 364, 505, 817, 925, 954 |
| CviAII | CATG | 7 cut(s) | 60, 285, 508, 682, 758, 1185, 1453 |
| CviQI | GTAC | 5 cut(s) | 364, 505, 817, 925, 954 |
| DdeI | CTNAG | 3 cut(s) | 501, 534, 879 |
| DpnI | GATC | 5 cut(s) | 334, 429, 527, 539, 600 |
| DpnII | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| Eam1104I | CTCTTC | 2 cut(s) | 459, 1186 |
| EarI | CTCTTC | 2 cut(s) | 459, 1186 |
| EciI | GGCGGA | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 1253 |
| EcoRII | CCWGG | 1 cut(s) | 1468 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 1253 |
| ErhI | CCWWGG | 2 cut(s) | 94, 1253 |
| FaeI | CATG | 7 cut(s) | 63, 288, 511, 685, 761, 1188, 1456 |
| FaqI | GGGAC | 2 cut(s) | 1221, 1323 |
| FatI | CATG | 7 cut(s) | 59, 284, 507, 681, 757, 1184, 1452 |
| FbaI | TGATCA | 2 cut(s) | 427, 525 |
| Fnu4HI | GCNGC | 5 cut(s) | 339, 347, 1320, 1428, 1457 |
| FokI | GGATG | 1 cut(s) | 1435 |
| Fsp4HI | GCNGC | 5 cut(s) | 339, 347, 1320, 1428, 1457 |
| FspBI | CTAG | 5 cut(s) | 246, 330, 1041, 1128, 1254 |
| GluI | GCNGC | 5 cut(s) | 339, 347, 1320, 1428, 1457 |
| GsuI | CTGGAG | 2 cut(s) | 192, 927 |
| HaeIII | GGCC | 1 cut(s) | 492 |
| Hin1II | CATG | 7 cut(s) | 63, 288, 511, 685, 761, 1188, 1456 |
| HincII | GTYRAC | 1 cut(s) | 796 |
| HindII | GTYRAC | 1 cut(s) | 796 |
| HinfI | GANTC | 3 cut(s) | 223, 587, 1161 |
| HphI | GGTGA | 6 cut(s) | 160, 322, 392, 818, 926, 1148 |
| Hpy166II | GTNNAC | 4 cut(s) | 366, 796, 875, 890 |
| Hpy188I | TCNGA | 6 cut(s) | 375, 502, 537, 859, 882, 1293 |
| Hpy188III | TCNNGA | 7 cut(s) | 191, 330, 415, 458, 523, 1041, 1128 |
| Hpy8I | GTNNAC | 4 cut(s) | 366, 796, 875, 890 |
| HpyAV | CCTTC | 2 cut(s) | 503, 507 |
| HpyCH4III | ACNGT | 4 cut(s) | 564, 706, 821, 1316 |
| HpyCH4IV | ACGT | 1 cut(s) | 966 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 1203 |
| HpyF3I | CTNAG | 3 cut(s) | 501, 534, 879 |
| HpySE526I | ACGT | 1 cut(s) | 966 |
| Hsp92II | CATG | 7 cut(s) | 63, 288, 511, 685, 761, 1188, 1456 |
| KpnI | GGTACC | 1 cut(s) | 957 |
| Ksp22I | TGATCA | 2 cut(s) | 427, 525 |
| Kzo9I | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| LmnI | GCTCC | 2 cut(s) | 354, 1255 |
| Lsp1109I | GCAGC | 3 cut(s) | 358, 1331, 1439 |
| LweI | GCATC | 3 cut(s) | 157, 746, 1348 |
| MaeI | CTAG | 5 cut(s) | 246, 330, 1041, 1128, 1254 |
| MaeII | ACGT | 1 cut(s) | 966 |
| MaeIII | GTNAC | 7 cut(s) | 148, 175, 662, 771, 962, 1118, 1417 |
| MalI | GATC | 5 cut(s) | 334, 429, 527, 539, 600 |
| MbiI | CCGCTC | 1 cut(s) | 1459 |
| MboI | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| MboII | GAAGA | 3 cut(s) | 476, 758, 1173 |
| MfeI | CAATTG | 1 cut(s) | 1269 |
| MlyI | GAGTC | 2 cut(s) | 217, 596 |
| MmeI | TCCRAC | 2 cut(s) | 18, 250 |
| MseI | TTAA | 2 cut(s) | 645, 1302 |
| MslI | CAYNNNNRTG | 2 cut(s) | 545, 1344 |
| MspR9I | CCNGG | 1 cut(s) | 1470 |
| MunI | CAATTG | 1 cut(s) | 1269 |
| Mva1269I | GAATGC | 1 cut(s) | 447 |
| MvaI | CCWGG | 1 cut(s) | 1470 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 1203 |
| NdeII | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| NlaIII | CATG | 7 cut(s) | 63, 288, 511, 685, 761, 1188, 1456 |
| NlaIV | GGNNCC | 3 cut(s) | 696, 717, 955 |
| NmuCI | GTSAC | 4 cut(s) | 148, 662, 771, 1118 |
| PctI | GAATGC | 1 cut(s) | 447 |
| PfeI | GAWTC | 1 cut(s) | 1161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 950 |
| PkrI | GCNGC | 5 cut(s) | 340, 348, 1321, 1429, 1458 |
| PleI | GAGTC | 2 cut(s) | 217, 595 |
| PpsI | GAGTC | 2 cut(s) | 217, 595 |
| Psp1406I | AACGTT | 1 cut(s) | 966 |
| Psp6I | CCWGG | 1 cut(s) | 1468 |
| PspGI | CCWGG | 1 cut(s) | 1468 |
| PspN4I | GGNNCC | 3 cut(s) | 696, 717, 955 |
| RsaI | GTAC | 5 cut(s) | 365, 506, 818, 926, 955 |
| RsaNI | GTAC | 5 cut(s) | 364, 505, 817, 925, 954 |
| RseI | CAYNNNNRTG | 2 cut(s) | 545, 1344 |
| SaqAI | TTAA | 2 cut(s) | 645, 1302 |
| SatI | GCNGC | 5 cut(s) | 339, 347, 1320, 1428, 1457 |
| Sau3AI | GATC | 5 cut(s) | 332, 427, 525, 537, 598 |
| SchI | GAGTC | 2 cut(s) | 217, 596 |
| ScrFI | CCNGG | 1 cut(s) | 1470 |
| SfaNI | GCATC | 3 cut(s) | 157, 746, 1348 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 545, 1344 |
| SsiI | CCGC | 3 cut(s) | 134, 339, 1457 |
| SspMI | CTAG | 5 cut(s) | 246, 330, 1041, 1128, 1254 |
| StyD4I | CCNGG | 1 cut(s) | 1468 |
| StyI | CCWWGG | 2 cut(s) | 94, 1253 |
| TaaI | ACNGT | 4 cut(s) | 564, 706, 821, 1316 |
| TaiI | ACGT | 1 cut(s) | 969 |
| TaqI | TCGA | 2 cut(s) | 597, 1019 |
| TatI | WGTACW | 3 cut(s) | 363, 504, 816 |
| TauI | GCSGC | 2 cut(s) | 341, 1459 |
| TfiI | GAWTC | 1 cut(s) | 1161 |
| Tru1I | TTAA | 2 cut(s) | 645, 1302 |
| Tru9I | TTAA | 2 cut(s) | 645, 1302 |
| TscAI | CASTG | 3 cut(s) | 238, 430, 1321 |
| TseFI | GTSAC | 4 cut(s) | 148, 662, 771, 1118 |
| TseI | GCWGC | 3 cut(s) | 346, 1319, 1427 |
| Tsp45I | GTSAC | 4 cut(s) | 148, 662, 771, 1118 |
| TspDTI | ATGAA | 7 cut(s) | 111, 273, 440, 477, 569, 842, 1173 |
| TspRI | CASTG | 3 cut(s) | 238, 430, 1321 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 950 |
| XapI | RAATTY | 3 cut(s) | 301, 1139, 1362 |
| XbaI | TCTAGA | 3 cut(s) | 329, 1040, 1127 |
| XmaJI | CCTAGG | 1 cut(s) | 1253 |
| XspI | CTAG | 5 cut(s) | 246, 330, 1041, 1128, 1254 |