GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 41 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 132 |
| AgsI | TTSAA | 1 cut(s) | 89 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 88, 120 |
| AluBI | AGCT | 2 cut(s) | 221, 296 |
| AluI | AGCT | 2 cut(s) | 221, 296 |
| Alw26I | GTCTC | 1 cut(s) | 171 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 323 |
| ApeKI | GCWGC | 5 cut(s) | 43, 76, 118, 185, 296 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 262, 294 |
| AsuHPI | GGTGA | 3 cut(s) | 204, 347, 353 |
| BbvI | GCAGC | 5 cut(s) | 55, 88, 130, 172, 283 |
| BccI | CCATC | 1 cut(s) | 223 |
| BcoDI | GTCTC | 1 cut(s) | 171 |
| BisI | GCNGC | 5 cut(s) | 44, 77, 119, 186, 297 |
| BlsI | GCNGC | 5 cut(s) | 45, 78, 120, 187, 298 |
| BpuEI | CTTGAG | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 132 |
| Bse1I | ACTGG | 1 cut(s) | 334 |
| BseGI | GGATG | 1 cut(s) | 272 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 132 |
| BseMII | CTCAG | 2 cut(s) | 71, 372 |
| BseNI | ACTGG | 1 cut(s) | 334 |
| BseRI | GAGGAG | 1 cut(s) | 10 |
| BseXI | GCAGC | 5 cut(s) | 55, 88, 130, 172, 283 |
| BsgI | GTGCAG | 2 cut(s) | 137, 180 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 132 |
| BsmAI | GTCTC | 1 cut(s) | 171 |
| BsmI | GAATGC | 2 cut(s) | 46, 121 |
| BspACI | CCGC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 2 cut(s) | 70, 373 |
| BsrI | ACTGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 3 cut(s) | 72, 147, 325 |
| BstC8I | GCNNGC | 3 cut(s) | 183, 199, 294 |
| BstDEI | CTNAG | 2 cut(s) | 57, 381 |
| BstEII | GGTNACC | 1 cut(s) | 353 |
| BstF5I | GGATG | 1 cut(s) | 272 |
| BstMAI | GTCTC | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstPI | GGTNACC | 1 cut(s) | 353 |
| BstV1I | GCAGC | 5 cut(s) | 55, 88, 130, 172, 283 |
| BtsCI | GGATG | 1 cut(s) | 272 |
| Cac8I | GCNNGC | 3 cut(s) | 183, 199, 294 |
| CaiI | CAGNNNCTG | 1 cut(s) | 323 |
| CviAII | CATG | 1 cut(s) | 230 |
| CviJI | RGCY | 4 cut(s) | 79, 185, 221, 296 |
| CviKI_1 | RGCY | 4 cut(s) | 79, 185, 221, 296 |
| DdeI | CTNAG | 2 cut(s) | 57, 381 |
| Eco91I | GGTNACC | 1 cut(s) | 353 |
| EcoO65I | GGTNACC | 1 cut(s) | 353 |
| FaeI | CATG | 1 cut(s) | 233 |
| FaiI | YATR | 8 cut(s) | 32, 131, 153, 231, 267, 269, 307, 309 |
| FatI | CATG | 1 cut(s) | 229 |
| FauNDI | CATATG | 2 cut(s) | 267, 307 |
| Fnu4HI | GCNGC | 5 cut(s) | 44, 77, 119, 186, 297 |
| FokI | GGATG | 1 cut(s) | 259 |
| Fsp4HI | GCNGC | 5 cut(s) | 44, 77, 119, 186, 297 |
| GluI | GCNGC | 5 cut(s) | 44, 77, 119, 186, 297 |
| Hin1II | CATG | 1 cut(s) | 233 |
| HinfI | GANTC | 1 cut(s) | 248 |
| HphI | GGTGA | 3 cut(s) | 204, 347, 353 |
| Hpy188I | TCNGA | 3 cut(s) | 60, 277, 319 |
| Hpy188III | TCNNGA | 1 cut(s) | 252 |
| HpyAV | CCTTC | 1 cut(s) | 338 |
| HpyCH4III | ACNGT | 3 cut(s) | 72, 147, 325 |
| HpyCH4V | TGCA | 4 cut(s) | 76, 118, 197, 292 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 381 |
| Hsp92II | CATG | 1 cut(s) | 233 |
| LmnI | GCTCC | 2 cut(s) | 226, 254 |
| LpnPI | CCDG | 4 cut(s) | 18, 167, 230, 315 |
| Lsp1109I | GCAGC | 5 cut(s) | 55, 88, 130, 172, 283 |
| MaeIII | GTNAC | 2 cut(s) | 325, 353 |
| MboII | GAAGA | 2 cut(s) | 57, 77 |
| MluCI | AATT | 2 cut(s) | 175, 205 |
| MmeI | TCCRAC | 1 cut(s) | 119 |
| MnlI | CCTC | 4 cut(s) | 31, 66, 118, 126 |
| Mva1269I | GAATGC | 2 cut(s) | 46, 121 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NdeI | CATATG | 2 cut(s) | 267, 307 |
| NlaIII | CATG | 1 cut(s) | 233 |
| NmuCI | GTSAC | 2 cut(s) | 325, 353 |
| PctI | GAATGC | 2 cut(s) | 46, 121 |
| PfeI | GAWTC | 1 cut(s) | 248 |
| PflFI | GACNNNGTC | 1 cut(s) | 351 |
| PkrI | GCNGC | 5 cut(s) | 45, 78, 120, 187, 298 |
| PspEI | GGTNACC | 1 cut(s) | 353 |
| PstNI | CAGNNNCTG | 1 cut(s) | 323 |
| PsyI | GACNNNGTC | 1 cut(s) | 351 |
| SatI | GCNGC | 5 cut(s) | 44, 77, 119, 186, 297 |
| SetI | ASST | 5 cut(s) | 137, 223, 298, 355, 367 |
| SmlI | CTYRAG | 1 cut(s) | 111 |
| SmoI | CTYRAG | 1 cut(s) | 111 |
| Sse9I | AATT | 2 cut(s) | 175, 205 |
| SsiI | CCGC | 1 cut(s) | 41 |
| SspI | AATATT | 1 cut(s) | 236 |
| TaaI | ACNGT | 3 cut(s) | 72, 147, 325 |
| TasI | AATT | 2 cut(s) | 175, 205 |
| TfiI | GAWTC | 1 cut(s) | 248 |
| TseFI | GTSAC | 2 cut(s) | 325, 353 |
| TseI | GCWGC | 5 cut(s) | 43, 76, 118, 185, 296 |
| Tsp45I | GTSAC | 2 cut(s) | 325, 353 |
| TspDTI | ATGAA | 3 cut(s) | 90, 246, 303 |
| Tth111I | GACNNNGTC | 1 cut(s) | 351 |