gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 140 |
| Acc36I | ACCTGC | 1 cut(s) | 21 |
| AccII | CGCG | 2 cut(s) | 324, 428 |
| AciI | CCGC | 4 cut(s) | 168, 220, 300, 324 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AfaI | GTAC | 1 cut(s) | 304 |
| AgsI | TTSAA | 3 cut(s) | 98, 317, 367 |
| AluBI | AGCT | 3 cut(s) | 59, 229, 241 |
| AluI | AGCT | 3 cut(s) | 59, 229, 241 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| AoxI | GGCC | 1 cut(s) | 100 |
| ApeKI | GCWGC | 5 cut(s) | 47, 119, 170, 226, 266 |
| AspLEI | GCGC | 2 cut(s) | 141, 428 |
| AspS9I | GGNCC | 1 cut(s) | 217 |
| AsuHPI | GGTGA | 2 cut(s) | 76, 157 |
| AvaII | GGWCC | 1 cut(s) | 217 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BauI | CACGAG | 2 cut(s) | 306, 354 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 5 cut(s) | 34, 106, 157, 238, 278 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 26, 60, 65, 98, 99, 132 |
| BfuAI | ACCTGC | 1 cut(s) | 21 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 99 |
| BisI | GCNGC | 5 cut(s) | 48, 120, 171, 227, 267 |
| BlsI | GCNGC | 5 cut(s) | 49, 121, 172, 228, 268 |
| Bme18I | GGWCC | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 1 cut(s) | 217 |
| BmiI | GGNNCC | 1 cut(s) | 361 |
| BpuEI | CTTGAG | 1 cut(s) | 257 |
| BsaWI | WCCGGW | 2 cut(s) | 61, 160 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 262, 292 |
| BseMII | CTCAG | 1 cut(s) | 67 |
| BseRI | GAGGAG | 2 cut(s) | 280, 325 |
| BseXI | GCAGC | 5 cut(s) | 34, 106, 157, 238, 278 |
| Bsh1236I | CGCG | 2 cut(s) | 324, 428 |
| Bsh1285I | CGRYCG | 1 cut(s) | 328 |
| BshFI | GGCC | 1 cut(s) | 102 |
| BsiEI | CGRYCG | 1 cut(s) | 328 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BsiSI | CCGG | 2 cut(s) | 62, 161 |
| BsmI | GAATGC | 1 cut(s) | 390 |
| BsnI | GGCC | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 2 cut(s) | 76, 204 |
| BspACI | CCGC | 4 cut(s) | 168, 220, 300, 324 |
| BspANI | GGCC | 1 cut(s) | 102 |
| BspCNI | CTCAG | 1 cut(s) | 66 |
| BspFNI | CGCG | 2 cut(s) | 324, 428 |
| BspLI | GGNNCC | 1 cut(s) | 361 |
| BspMI | ACCTGC | 1 cut(s) | 21 |
| BssMI | GATC | 2 cut(s) | 76, 204 |
| BssSI | CACGAG | 2 cut(s) | 306, 354 |
| Bst2BI | CACGAG | 2 cut(s) | 306, 354 |
| Bst4CI | ACNGT | 1 cut(s) | 437 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 396 |
| BstC8I | GCNNGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 1 cut(s) | 53 |
| BstEII | GGTNACC | 1 cut(s) | 163 |
| BstFNI | CGCG | 2 cut(s) | 324, 428 |
| BstHHI | GCGC | 2 cut(s) | 141, 428 |
| BstKTI | GATC | 2 cut(s) | 79, 207 |
| BstMBI | GATC | 2 cut(s) | 76, 204 |
| BstMCI | CGRYCG | 1 cut(s) | 328 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 99, 125, 266, 396 |
| BstPI | GGTNACC | 1 cut(s) | 163 |
| BstUI | CGCG | 2 cut(s) | 324, 428 |
| BstV1I | GCAGC | 5 cut(s) | 34, 106, 157, 238, 278 |
| BsuRI | GGCC | 1 cut(s) | 102 |
| BtgZI | GCGATG | 1 cut(s) | 305 |
| BtsI | GCAGTG | 2 cut(s) | 129, 421 |
| BtsIMutI | CAGTG | 3 cut(s) | 129, 401, 421 |
| BveI | ACCTGC | 1 cut(s) | 21 |
| Cac8I | GCNNGC | 1 cut(s) | 224 |
| CfoI | GCGC | 2 cut(s) | 141, 428 |
| Cfr13I | GGNCC | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 401 |
| Csp6I | GTAC | 1 cut(s) | 303 |
| CviAII | CATG | 2 cut(s) | 296, 455 |
| CviJI | RGCY | 7 cut(s) | 30, 59, 102, 229, 241, 269, 360 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 59, 102, 229, 241, 269, 360 |
| CviQI | GTAC | 1 cut(s) | 303 |
| DdeI | CTNAG | 1 cut(s) | 53 |
| DpnI | GATC | 2 cut(s) | 78, 206 |
| DpnII | GATC | 2 cut(s) | 76, 204 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 59 |
| Eco147I | AGGCCT | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 1 cut(s) | 217 |
| Eco53kI | GAGCTC | 1 cut(s) | 59 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| Eco91I | GGTNACC | 1 cut(s) | 163 |
| EcoICRI | GAGCTC | 1 cut(s) | 59 |
| EcoO65I | GGTNACC | 1 cut(s) | 163 |
| EcoT22I | ATGCAT | 1 cut(s) | 460 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| FaeI | CATG | 2 cut(s) | 299, 458 |
| FaiI | YATR | 7 cut(s) | 117, 183, 297, 456, 460, 462, 472 |
| FatI | CATG | 2 cut(s) | 295, 454 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 120, 171, 227, 267 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 120, 171, 227, 267 |
| FspI | TGCGCA | 1 cut(s) | 140 |
| GlaI | GCGC | 2 cut(s) | 140, 427 |
| GluI | GCNGC | 5 cut(s) | 48, 120, 171, 227, 267 |
| HaeIII | GGCC | 1 cut(s) | 102 |
| HapII | CCGG | 2 cut(s) | 62, 161 |
| HgaI | GACGC | 1 cut(s) | 401 |
| HhaI | GCGC | 2 cut(s) | 141, 428 |
| Hin1II | CATG | 2 cut(s) | 299, 458 |
| Hin6I | GCGC | 2 cut(s) | 139, 426 |
| HinP1I | GCGC | 2 cut(s) | 139, 426 |
| HinfI | GANTC | 2 cut(s) | 71, 451 |
| HpaII | CCGG | 2 cut(s) | 62, 161 |
| HphI | GGTGA | 2 cut(s) | 76, 157 |
| Hpy188I | TCNGA | 4 cut(s) | 56, 76, 109, 199 |
| HpyAV | CCTTC | 5 cut(s) | 104, 200, 294, 373, 387 |
| HpyCH4III | ACNGT | 1 cut(s) | 437 |
| HpyCH4V | TGCA | 3 cut(s) | 16, 266, 458 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 99, 125, 266, 396 |
| HpyF3I | CTNAG | 1 cut(s) | 53 |
| Hsp92II | CATG | 2 cut(s) | 299, 458 |
| HspAI | GCGC | 2 cut(s) | 139, 426 |
| Kzo9I | GATC | 2 cut(s) | 76, 204 |
| LmnI | GCTCC | 3 cut(s) | 64, 253, 365 |
| LpnPI | CCDG | 7 cut(s) | 26, 65, 75, 157, 174, 264, 413 |
| Lsp1109I | GCAGC | 5 cut(s) | 34, 106, 157, 238, 278 |
| MaeIII | GTNAC | 3 cut(s) | 163, 419, 437 |
| MalI | GATC | 2 cut(s) | 78, 206 |
| MboI | GATC | 2 cut(s) | 76, 204 |
| MboII | GAAGA | 1 cut(s) | 212 |
| MfeI | CAATTG | 1 cut(s) | 17 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 2 cut(s) | 17, 349 |
| MlyI | GAGTC | 1 cut(s) | 65 |
| Mph1103I | ATGCAT | 1 cut(s) | 460 |
| MseI | TTAA | 1 cut(s) | 24 |
| MslI | CAYNNNNRTG | 1 cut(s) | 146 |
| MspA1I | CMGCKG | 1 cut(s) | 170 |
| MspI | CCGG | 2 cut(s) | 62, 161 |
| MunI | CAATTG | 1 cut(s) | 17 |
| Mva1269I | GAATGC | 1 cut(s) | 390 |
| MvnI | CGCG | 2 cut(s) | 324, 428 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 99, 125, 266, 396 |
| NdeII | GATC | 2 cut(s) | 76, 204 |
| NlaIII | CATG | 2 cut(s) | 299, 458 |
| NlaIV | GGNNCC | 1 cut(s) | 361 |
| NmuCI | GTSAC | 2 cut(s) | 163, 419 |
| NsbI | TGCGCA | 1 cut(s) | 140 |
| NsiI | ATGCAT | 1 cut(s) | 460 |
| PceI | AGGCCT | 1 cut(s) | 102 |
| PctI | GAATGC | 1 cut(s) | 390 |
| PfeI | GAWTC | 1 cut(s) | 451 |
| PkrI | GCNGC | 5 cut(s) | 49, 121, 172, 228, 268 |
| PleI | GAGTC | 1 cut(s) | 65 |
| PpsI | GAGTC | 1 cut(s) | 65 |
| Psp124BI | GAGCTC | 1 cut(s) | 61 |
| PspEI | GGTNACC | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 1 cut(s) | 361 |
| PspPI | GGNCC | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 304 |
| RsaNI | GTAC | 1 cut(s) | 303 |
| RseI | CAYNNNNRTG | 1 cut(s) | 146 |
| SacI | GAGCTC | 1 cut(s) | 61 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| SatI | GCNGC | 5 cut(s) | 48, 120, 171, 227, 267 |
| Sau3AI | GATC | 2 cut(s) | 76, 204 |
| Sau96I | GGNCC | 1 cut(s) | 217 |
| SchI | GAGTC | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SinI | GGWCC | 1 cut(s) | 217 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 236 |
| SmoI | CTYRAG | 1 cut(s) | 236 |
| Sse9I | AATT | 2 cut(s) | 17, 349 |
| SseBI | AGGCCT | 1 cut(s) | 102 |
| SsiI | CCGC | 4 cut(s) | 168, 220, 300, 324 |
| SstI | GAGCTC | 1 cut(s) | 61 |
| StuI | AGGCCT | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 437 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 2 cut(s) | 17, 349 |
| TfiI | GAWTC | 1 cut(s) | 451 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TscAI | CASTG | 3 cut(s) | 136, 401, 428 |
| TseFI | GTSAC | 2 cut(s) | 163, 419 |
| TseI | GCWGC | 5 cut(s) | 47, 119, 170, 226, 266 |
| Tsp45I | GTSAC | 2 cut(s) | 163, 419 |
| TspDTI | ATGAA | 2 cut(s) | 126, 464 |
| TspRI | CASTG | 3 cut(s) | 136, 401, 428 |
| VpaK11BI | GGWCC | 1 cut(s) | 217 |
| Zsp2I | ATGCAT | 1 cut(s) | 460 |