gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 36, 170 |
| AciI | CCGC | 7 cut(s) | 97, 198, 339, 342, 361, 456, 459 |
| AcoI | YGGCCR | 1 cut(s) | 237 |
| AcsI | RAATTY | 3 cut(s) | 424, 438, 629 |
| AcuI | CTGAAG | 1 cut(s) | 453 |
| AfaI | GTAC | 2 cut(s) | 250, 639 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 427 |
| AgsI | TTSAA | 4 cut(s) | 130, 476, 602, 629 |
| AjiI | CACGTC | 1 cut(s) | 499 |
| AluBI | AGCT | 4 cut(s) | 297, 305, 451, 625 |
| AluI | AGCT | 4 cut(s) | 297, 305, 451, 625 |
| Ama87I | CYCGRG | 1 cut(s) | 573 |
| AoxI | GGCC | 2 cut(s) | 108, 237 |
| ApoI | RAATTY | 3 cut(s) | 424, 438, 629 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 30 |
| AspS9I | GGNCC | 2 cut(s) | 49, 223 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| AvaI | CYCGRG | 1 cut(s) | 573 |
| AvaII | GGWCC | 2 cut(s) | 49, 223 |
| AxyI | CCTNAGG | 1 cut(s) | 503 |
| BccI | CCATC | 2 cut(s) | 390, 523 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BclI | TGATCA | 2 cut(s) | 243, 669 |
| BisI | GCNGC | 4 cut(s) | 342, 362, 456, 459 |
| BlsI | GCNGC | 4 cut(s) | 343, 363, 457, 460 |
| Bme18I | GGWCC | 2 cut(s) | 49, 223 |
| BmeT110I | CYCGRG | 1 cut(s) | 573 |
| BmgBI | CACGTC | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 2 cut(s) | 49, 223 |
| BmsI | GCATC | 2 cut(s) | 33, 390 |
| BpmI | CTGGAG | 2 cut(s) | 283, 573 |
| BpuEI | CTTGAG | 2 cut(s) | 350, 371 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 427 |
| Bse118I | RCCGGY | 1 cut(s) | 46 |
| Bse21I | CCTNAGG | 1 cut(s) | 503 |
| Bse3DI | GCAATG | 2 cut(s) | 352, 672 |
| BseGI | GGATG | 4 cut(s) | 93, 401, 405, 549 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 427 |
| BseMI | GCAATG | 2 cut(s) | 352, 672 |
| BseMII | CTCAG | 1 cut(s) | 635 |
| Bsh1236I | CGCG | 2 cut(s) | 36, 170 |
| BshFI | GGCC | 2 cut(s) | 110, 239 |
| BsiHKCI | CYCGRG | 1 cut(s) | 573 |
| BsiSI | CCGG | 2 cut(s) | 47, 462 |
| BslFI | GGGAC | 3 cut(s) | 200, 522, 592 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 427 |
| BsmFI | GGGAC | 3 cut(s) | 200, 522, 592 |
| BsmI | GAATGC | 2 cut(s) | 30, 32 |
| BsnI | GGCC | 2 cut(s) | 110, 239 |
| BsoBI | CYCGRG | 1 cut(s) | 573 |
| Bsp143I | GATC | 3 cut(s) | 21, 243, 669 |
| Bsp68I | TCGCGA | 2 cut(s) | 36, 170 |
| BspACI | CCGC | 7 cut(s) | 97, 198, 339, 342, 361, 456, 459 |
| BspANI | GGCC | 2 cut(s) | 110, 239 |
| BspCNI | CTCAG | 1 cut(s) | 634 |
| BspFNI | CGCG | 2 cut(s) | 36, 170 |
| BsrDI | GCAATG | 2 cut(s) | 352, 672 |
| BsrFI | RCCGGY | 1 cut(s) | 46 |
| BssAI | RCCGGY | 1 cut(s) | 46 |
| BssMI | GATC | 3 cut(s) | 21, 243, 669 |
| Bst4CI | ACNGT | 1 cut(s) | 667 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 4 cut(s) | 359, 373, 377, 453 |
| BstDEI | CTNAG | 2 cut(s) | 503, 621 |
| BstF5I | GGATG | 4 cut(s) | 93, 401, 405, 549 |
| BstFNI | CGCG | 2 cut(s) | 36, 170 |
| BstKTI | GATC | 3 cut(s) | 24, 246, 672 |
| BstMBI | GATC | 3 cut(s) | 21, 243, 669 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 381, 592 |
| BstNSI | RCATGY | 2 cut(s) | 234, 379 |
| BstUI | CGCG | 2 cut(s) | 36, 170 |
| Bsu36I | CCTNAGG | 1 cut(s) | 503 |
| BsuRI | GGCC | 2 cut(s) | 110, 239 |
| BtrI | CACGTC | 1 cut(s) | 499 |
| BtsCI | GGATG | 4 cut(s) | 93, 401, 405, 549 |
| BtsI | GCAGTG | 1 cut(s) | 158 |
| BtsIMutI | CAGTG | 1 cut(s) | 158 |
| BtuMI | TCGCGA | 2 cut(s) | 36, 170 |
| Cac8I | GCNNGC | 4 cut(s) | 359, 373, 377, 453 |
| Cfr10I | RCCGGY | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 49, 223 |
| Csp6I | GTAC | 2 cut(s) | 249, 638 |
| CviAII | CATG | 6 cut(s) | 136, 231, 235, 376, 540, 587 |
| CviQI | GTAC | 2 cut(s) | 249, 638 |
| DdeI | CTNAG | 2 cut(s) | 503, 621 |
| DpnI | GATC | 3 cut(s) | 23, 245, 671 |
| DpnII | GATC | 3 cut(s) | 21, 243, 669 |
| EaeI | YGGCCR | 1 cut(s) | 237 |
| Eco147I | AGGCCT | 1 cut(s) | 110 |
| Eco32I | GATATC | 1 cut(s) | 467 |
| Eco47I | GGWCC | 2 cut(s) | 49, 223 |
| Eco57I | CTGAAG | 1 cut(s) | 453 |
| Eco81I | CCTNAGG | 1 cut(s) | 503 |
| Eco88I | CYCGRG | 1 cut(s) | 573 |
| EcoRV | GATATC | 1 cut(s) | 467 |
| EcoT22I | ATGCAT | 2 cut(s) | 32, 236 |
| FaeI | CATG | 6 cut(s) | 139, 234, 238, 379, 543, 590 |
| FaqI | GGGAC | 3 cut(s) | 200, 522, 592 |
| FatI | CATG | 6 cut(s) | 135, 230, 234, 375, 539, 586 |
| FauI | CCCGC | 1 cut(s) | 205 |
| FbaI | TGATCA | 2 cut(s) | 243, 669 |
| Fnu4HI | GCNGC | 4 cut(s) | 342, 362, 456, 459 |
| FokI | GGATG | 4 cut(s) | 80, 408, 412, 556 |
| Fsp4HI | GCNGC | 4 cut(s) | 342, 362, 456, 459 |
| GluI | GCNGC | 4 cut(s) | 342, 362, 456, 459 |
| GsuI | CTGGAG | 2 cut(s) | 283, 573 |
| HaeIII | GGCC | 2 cut(s) | 110, 239 |
| HapII | CCGG | 2 cut(s) | 47, 462 |
| Hin1II | CATG | 6 cut(s) | 139, 234, 238, 379, 543, 590 |
| HinfI | GANTC | 5 cut(s) | 144, 325, 330, 571, 605 |
| HpaII | CCGG | 2 cut(s) | 47, 462 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 1 cut(s) | 158 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 79, 169, 300, 388, 575, 602 |
| Hpy8I | GTNNAC | 1 cut(s) | 158 |
| Hpy99I | CGWCG | 2 cut(s) | 175, 690 |
| HpyAV | CCTTC | 2 cut(s) | 134, 214 |
| HpyCH4III | ACNGT | 1 cut(s) | 667 |
| HpyCH4IV | ACGT | 1 cut(s) | 498 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 234, 291, 379, 403, 586 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 381, 592 |
| HpyF3I | CTNAG | 2 cut(s) | 503, 621 |
| HpySE526I | ACGT | 1 cut(s) | 498 |
| Hsp92II | CATG | 6 cut(s) | 139, 234, 238, 379, 543, 590 |
| Ksp22I | TGATCA | 2 cut(s) | 243, 669 |
| Kzo9I | GATC | 3 cut(s) | 21, 243, 669 |
| LmnI | GCTCC | 1 cut(s) | 302 |
| LpnPI | CCDG | 8 cut(s) | 53, 60, 64, 73, 313, 475, 537, 659 |
| LweI | GCATC | 2 cut(s) | 33, 390 |
| MaeII | ACGT | 1 cut(s) | 498 |
| MaeIII | GTNAC | 2 cut(s) | 494, 568 |
| MalI | GATC | 3 cut(s) | 23, 245, 671 |
| MboI | GATC | 3 cut(s) | 21, 243, 669 |
| MboII | GAAGA | 5 cut(s) | 191, 446, 488, 590, 590 |
| MluCI | AATT | 5 cut(s) | 164, 424, 438, 581, 629 |
| MlyI | GAGTC | 3 cut(s) | 153, 565, 614 |
| MnlI | CCTC | 4 cut(s) | 21, 395, 540, 548 |
| Mph1103I | ATGCAT | 2 cut(s) | 32, 236 |
| MroXI | GAANNNNTTC | 1 cut(s) | 30 |
| MslI | CAYNNNNRTG | 3 cut(s) | 239, 525, 665 |
| MspI | CCGG | 2 cut(s) | 47, 462 |
| Mva1269I | GAATGC | 2 cut(s) | 30, 32 |
| MvnI | CGCG | 2 cut(s) | 36, 170 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 381, 592 |
| NdeII | GATC | 3 cut(s) | 21, 243, 669 |
| NlaIII | CATG | 6 cut(s) | 139, 234, 238, 379, 543, 590 |
| NmuCI | GTSAC | 2 cut(s) | 494, 568 |
| NruI | TCGCGA | 2 cut(s) | 36, 170 |
| NsiI | ATGCAT | 2 cut(s) | 32, 236 |
| NspI | RCATGY | 2 cut(s) | 234, 379 |
| PaeI | GCATGC | 1 cut(s) | 379 |
| PaeR7I | CTCGAG | 1 cut(s) | 573 |
| PceI | AGGCCT | 1 cut(s) | 110 |
| PctI | GAATGC | 2 cut(s) | 30, 32 |
| PdmI | GAANNNNTTC | 1 cut(s) | 30 |
| PfeI | GAWTC | 2 cut(s) | 325, 330 |
| PflFI | GACNNNGTC | 1 cut(s) | 533 |
| PkrI | GCNGC | 4 cut(s) | 343, 363, 457, 460 |
| PleI | GAGTC | 3 cut(s) | 152, 565, 613 |
| PpsI | GAGTC | 3 cut(s) | 152, 565, 613 |
| PspPI | GGNCC | 2 cut(s) | 49, 223 |
| PsyI | GACNNNGTC | 1 cut(s) | 533 |
| RruI | TCGCGA | 2 cut(s) | 36, 170 |
| RsaI | GTAC | 2 cut(s) | 250, 639 |
| RsaNI | GTAC | 2 cut(s) | 249, 638 |
| RseI | CAYNNNNRTG | 3 cut(s) | 239, 525, 665 |
| SatI | GCNGC | 4 cut(s) | 342, 362, 456, 459 |
| Sau3AI | GATC | 3 cut(s) | 21, 243, 669 |
| Sau96I | GGNCC | 2 cut(s) | 49, 223 |
| SchI | GAGTC | 3 cut(s) | 153, 565, 614 |
| SetI | ASST | 9 cut(s) | 13, 42, 88, 299, 307, 423, 453, 501, 627 |
| SfaNI | GCATC | 2 cut(s) | 33, 390 |
| Sfr274I | CTCGAG | 1 cut(s) | 573 |
| SinI | GGWCC | 2 cut(s) | 49, 223 |
| SlaI | CTCGAG | 1 cut(s) | 573 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 239, 525, 665 |
| SmlI | CTYRAG | 3 cut(s) | 365, 386, 573 |
| SmoI | CTYRAG | 3 cut(s) | 365, 386, 573 |
| SphI | GCATGC | 1 cut(s) | 379 |
| Sse9I | AATT | 5 cut(s) | 164, 424, 438, 581, 629 |
| SseBI | AGGCCT | 1 cut(s) | 110 |
| SsiI | CCGC | 7 cut(s) | 97, 198, 339, 342, 361, 456, 459 |
| StuI | AGGCCT | 1 cut(s) | 110 |
| TaaI | ACNGT | 1 cut(s) | 667 |
| TaiI | ACGT | 1 cut(s) | 501 |
| TaqI | TCGA | 4 cut(s) | 24, 147, 328, 574 |
| TasI | AATT | 5 cut(s) | 164, 424, 438, 581, 629 |
| TatI | WGTACW | 2 cut(s) | 248, 637 |
| TauI | GCSGC | 4 cut(s) | 344, 364, 458, 461 |
| TfiI | GAWTC | 2 cut(s) | 325, 330 |
| TscAI | CASTG | 1 cut(s) | 158 |
| TseFI | GTSAC | 2 cut(s) | 494, 568 |
| Tsp45I | GTSAC | 2 cut(s) | 494, 568 |
| TspDTI | ATGAA | 3 cut(s) | 82, 192, 233 |
| TspRI | CASTG | 1 cut(s) | 158 |
| Tth111I | GACNNNGTC | 1 cut(s) | 533 |
| VpaK11BI | GGWCC | 2 cut(s) | 49, 223 |
| XapI | RAATTY | 3 cut(s) | 424, 438, 629 |
| XceI | RCATGY | 2 cut(s) | 234, 379 |
| XhoI | CTCGAG | 1 cut(s) | 573 |
| XmnI | GAANNNNTTC | 1 cut(s) | 30 |
| Zsp2I | ATGCAT | 2 cut(s) | 32, 236 |