MD12G1231800.v1.1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000034
Physical Location & Seq
Reverse (-)
30662392 .. 30664236
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1231800.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCTGCTTCTTCTTCTCTTCTTACCAGCTCCCTTCCTAATATTTCCTATCTGGTTTCCATCAAACTTGATCGAACCAATTACATGTTGTGGCTTGCCCAGTTTAATCCCTTACTTAAAAGTAATGATCTTGTTGCCTATGTTGATGGTACAAAAACATGTCCAACCAAGTTTCTTGAGAATACTTCTACTCTCAATCCCGAGTACGTAACTTGGCAGCGACAGGACCAACAATTGTTAAGTTGGATTAACTCAACTTTGACACCCAATGTGCTTTCCATCGTCGCAACCTGTGACACATCCCAAGCTGCTTGGGATACTCTGAAAACACGTTTTGCTTCTCAATCTCGCACCCGTGTTCTTCAACTTAAGCACCAGATGCAGTCCACTAAAAGAGGTAACATGTCCATCACAGACTATGTTGATAAATTAACTAACTTTGCTGATCAATTGGCTCTTGCGGGAAAACCTGTTGATGACGATGATCTTATGGAGCTGATTTTGAATGGTGTTGGTCCTGCTTTCGAAAGTATAGTTACTTCGGTTCAAGCAAGAGAAAATCCTATGAGTCTTGACGATATGGTTGCTTTGCTCTTGAGCGCTGAAAGCCGTATGGACGACTATAGCACTACTTTCAGTCCTGATCACACCACAACAGCTCTCTTTGCCCCTTCTGGCTCCACTCCCAATCCTGGTCGTGGAACCACACTTCACCGAGGAAATGGTCGTACATCCTCATTCCGTCGTGGTGGTTTTCAAGGTCGTGGCTTTTTTCAAGGTCGCAGTGCTGGTAATCCTTTTGTTGGCCGTCGTGGTGGTTCAAACAGTGGTTTGTTTCATGGTGGATCCGGTCGTGGCTCGTTTCAGAATCGAGGACTTCTTCCTACACCAAATGCTGGTCTTCGTCGCTCTTCCTATCTTCCCAACCATGCTGCGGATGCTCCTTCTTCCTCTAATATTTGTAACTATTGTGGTGATCATCGTCATTCTACCGCAAATTGTTTCAAGTCTCCTTTTTCCGAAGGCCGCTATCCACAATCACATGCTATGATGGCTGCCTCTCCTGTGGTTAATGCACGGTTCCCTACATGGTATACCGACAGTGGCGCATCGTCCCATATCACCAATGATTTAGCTAATTTGAGCCTTTCCACAGAATATACTGGCCAAGACCAGGTCGCGGTTGGTAATGGTGCAGGATCTATCCACGGGGAAGACGCTTTTCCACGGCAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

413

Amino Acids

44.72

Weight (kDa)

7.71

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 38 - 207 1e-24 gag-polypeptide of LTR copia-type
Retrotrans_gag PF03732 100 - 171 2.4e-06 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 896
AccI GTMKAC 1 cut(s) 1094
AccII CGCG 1 cut(s) 1181
AciI CCGC 5 cut(s) 461, 935, 993, 1027, 1181
AclWI GGATC 3 cut(s) 840, 853, 1207
AcoI YGGCCR 2 cut(s) 805, 1165
AfaI GTAC 3 cut(s) 151, 206, 730
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 7 cut(s) 692, 698, 803, 896, 934, 1174, 1180
AflII CTTAAG 1 cut(s) 368
AflIII ACRYGT 4 cut(s) 84, 158, 329, 402
AgsI TTSAA 7 cut(s) 365, 505, 548, 758, 776, 822, 1006
AjnI CCWGG 2 cut(s) 691, 1173
AluBI AGCT 5 cut(s) 30, 308, 496, 659, 1136
AluI AGCT 5 cut(s) 30, 308, 496, 659, 1136
Alw26I GTCTC 1 cut(s) 1014
AlwI GGATC 3 cut(s) 840, 853, 1207
Ama87I CYCGRG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 601
AoxI GGCC 3 cut(s) 805, 1024, 1165
ApeKI GCWGC 5 cut(s) 5, 217, 308, 932, 1055
AspLEI GCGC 2 cut(s) 602, 1109
AspS9I GGNCC 2 cut(s) 226, 515
AsuHPI GGTGA 3 cut(s) 704, 986, 1114
AsuII TTCGAA 1 cut(s) 525
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 2 cut(s) 226, 515
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 845
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BbsI GAAGAC 2 cut(s) 893, 1221
BbvI GCAGC 4 cut(s) 229, 295, 919, 1042
BccI CCATC 5 cut(s) 68, 140, 287, 416, 1045
BceAI ACGGC 2 cut(s) 594, 792
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 2 cut(s) 693, 1175
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 3 cut(s) 445, 643, 976
BcoDI GTCTC 1 cut(s) 1014
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 368
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 6 cut(s) 6, 218, 309, 933, 1027, 1056
BlsI GCNGC 6 cut(s) 7, 219, 310, 934, 1028, 1057
Bme1390I CCNGG 2 cut(s) 693, 1175
Bme18I GGWCC 2 cut(s) 226, 515
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 226, 515
BmiI GGNNCC 4 cut(s) 679, 703, 847, 1082
BmrFI CCNGG 2 cut(s) 693, 1175
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 369, 928, 1118
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 2 cut(s) 893, 1221
Bpu14I TTCGAA 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 197, 616
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 715, 1207, 1226
BsaWI WCCGGW 1 cut(s) 848
Bsc4I CCNNNNNNNGG 7 cut(s) 692, 698, 803, 896, 934, 1174, 1180
Bse1I ACTGG 2 cut(s) 100, 1168
BseBI CCWGG 2 cut(s) 693, 1175
BseDI CCNNGG 3 cut(s) 715, 1207, 1226
BseGI GGATG 3 cut(s) 299, 731, 943
BseLI CCNNNNNNNGG 7 cut(s) 692, 698, 803, 896, 934, 1174, 1180
BseNI ACTGG 2 cut(s) 100, 1168
BseXI GCAGC 4 cut(s) 229, 295, 919, 1042
BsgI GTGCAG 1 cut(s) 1215
Bsh1236I CGCG 1 cut(s) 1181
Bsh1285I CGRYCG 1 cut(s) 853
BshFI GGCC 3 cut(s) 807, 1026, 1167
BsiEI CGRYCG 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 1099
BslI CCNNNNNNNGG 7 cut(s) 692, 698, 803, 896, 934, 1174, 1180
BsmAI GTCTC 1 cut(s) 1014
BsmFI GGGAC 1 cut(s) 1099
BsnI GGCC 3 cut(s) 807, 1026, 1167
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 525
Bsp143I GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
BspACI CCGC 5 cut(s) 461, 935, 993, 1027, 1181
BspANI GGCC 3 cut(s) 807, 1026, 1167
BspFNI CGCG 1 cut(s) 1181
BspLI GGNNCC 4 cut(s) 679, 703, 847, 1082
BspPI GGATC 3 cut(s) 840, 853, 1207
BspQI GCTCTTC 1 cut(s) 916
BspT104I TTCGAA 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 368
BsrI ACTGG 2 cut(s) 100, 1168
BssECI CCNNGG 3 cut(s) 715, 1207, 1226
BssMI GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
BssNAI GTATAC 1 cut(s) 1095
Bst1107I GTATAC 1 cut(s) 1095
Bst2UI CCWGG 2 cut(s) 693, 1175
Bst4CI ACNGT 3 cut(s) 827, 1080, 1103
Bst6I CTCTTC 2 cut(s) 24, 916
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 96
BstDSI CCRYGG 2 cut(s) 1207, 1226
BstF5I GGATG 3 cut(s) 299, 731, 943
BstFNI CGCG 1 cut(s) 1181
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 2 cut(s) 602, 1109
BstKTI GATC 8 cut(s) 73, 130, 448, 487, 646, 848, 979, 1202
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
BstMCI CGRYCG 1 cut(s) 853
BstMWI GCNNNNNNNGC 5 cut(s) 379, 606, 665, 938, 1052
BstNI CCWGG 2 cut(s) 693, 1175
BstNSI RCATGY 4 cut(s) 88, 162, 406, 1046
BstSCI CCNGG 2 cut(s) 691, 1173
BstSFI CTRYAG 1 cut(s) 622
BstSNI TACGTA 1 cut(s) 208
BstUI CGCG 1 cut(s) 1181
BstV1I GCAGC 4 cut(s) 229, 295, 919, 1042
BstV2I GAAGAC 2 cut(s) 893, 1221
BstX2I RGATCY 2 cut(s) 845, 1199
BstYI RGATCY 2 cut(s) 845, 1199
BstZ17I GTATAC 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 807, 1026, 1167
BtgI CCRYGG 2 cut(s) 1207, 1226
BtsCI GGATG 3 cut(s) 299, 731, 943
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 3 cut(s) 790, 832, 1108
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 2 cut(s) 602, 1109
Cfr13I GGNCC 2 cut(s) 226, 515
CseI GACGC 1 cut(s) 1226
CsiI ACCWGGT 1 cut(s) 1173
Csp6I GTAC 3 cut(s) 150, 205, 729
CviAII CATG 7 cut(s) 85, 159, 403, 839, 929, 1043, 1089
CviQI GTAC 3 cut(s) 150, 205, 729
DpnI GATC 8 cut(s) 72, 129, 447, 486, 645, 847, 978, 1201
DpnII GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
EaeI YGGCCR 2 cut(s) 805, 1165
Eam1104I CTCTTC 2 cut(s) 24, 916
EarI CTCTTC 2 cut(s) 24, 916
Eco105I TACGTA 1 cut(s) 208
Eco47I GGWCC 2 cut(s) 226, 515
Eco47III AGCGCT 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 691, 1173
FaeI CATG 7 cut(s) 88, 162, 406, 842, 932, 1046, 1092
FaqI GGGAC 1 cut(s) 1099
FatI CATG 7 cut(s) 84, 158, 402, 838, 928, 1042, 1088
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 3 cut(s) 445, 643, 976
FblI GTMKAC 1 cut(s) 1094
Fnu4HI GCNGC 6 cut(s) 6, 218, 309, 933, 1027, 1056
FokI GGATG 3 cut(s) 286, 718, 950
Fsp4HI GCNGC 6 cut(s) 6, 218, 309, 933, 1027, 1056
GlaI GCGC 2 cut(s) 601, 1108
GluI GCNGC 6 cut(s) 6, 218, 309, 933, 1027, 1056
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 3 cut(s) 807, 1026, 1167
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 1226
HhaI GCGC 2 cut(s) 602, 1109
Hin1II CATG 7 cut(s) 88, 162, 406, 842, 932, 1046, 1092
Hin6I GCGC 2 cut(s) 600, 1107
HinP1I GCGC 2 cut(s) 600, 1107
HinfI GANTC 2 cut(s) 568, 868
HpaII CCGG 1 cut(s) 849
HphI GGTGA 3 cut(s) 704, 986, 1114
Hpy166II GTNNAC 2 cut(s) 387, 1095
Hpy188I TCNGA 3 cut(s) 324, 867, 1021
Hpy188III TCNNGA 5 cut(s) 176, 200, 572, 595, 641
Hpy8I GTNNAC 2 cut(s) 387, 1095
Hpy99I CGWCG 4 cut(s) 287, 747, 813, 909
HpyAV CCTTC 4 cut(s) 44, 681, 954, 1016
HpyCH4III ACNGT 3 cut(s) 827, 1080, 1103
HpyCH4IV ACGT 2 cut(s) 207, 331
HpyCH4V TGCA 3 cut(s) 382, 1076, 1196
HpyF10VI GCNNNNNNNGC 5 cut(s) 379, 606, 665, 938, 1052
HpySE526I ACGT 2 cut(s) 207, 331
Hsp92II CATG 7 cut(s) 88, 162, 406, 842, 932, 1046, 1092
HspAI GCGC 2 cut(s) 600, 1107
Ksp22I TGATCA 3 cut(s) 445, 643, 976
Kzo9I GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
LguI GCTCTTC 1 cut(s) 916
LmnI GCTCC 4 cut(s) 35, 493, 683, 946
Lsp1109I GCAGC 4 cut(s) 229, 295, 919, 1042
LweI GCATC 3 cut(s) 369, 928, 1118
MabI ACCWGGT 1 cut(s) 1173
MaeII ACGT 2 cut(s) 207, 331
MaeIII GTNAC 5 cut(s) 208, 293, 398, 535, 962
MalI GATC 8 cut(s) 72, 129, 447, 486, 645, 847, 978, 1201
MboI GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
MfeI CAATTG 2 cut(s) 233, 449
MflI RGATCY 2 cut(s) 845, 1199
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 6 cut(s) 79, 233, 428, 449, 997, 1138
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 188, 224
MnlI CCTC 6 cut(s) 389, 710, 745, 866, 961, 1069
Mox20I TGGCCA 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 7 cut(s) 105, 117, 239, 249, 369, 431, 1071
Msp20I TGGCCA 1 cut(s) 1167
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 2 cut(s) 693, 1175
MunI CAATTG 2 cut(s) 233, 449
MvaI CCWGG 2 cut(s) 693, 1175
MvnI CGCG 1 cut(s) 1181
MwoI GCNNNNNNNGC 5 cut(s) 379, 606, 665, 938, 1052
NdeII GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
NlaIII CATG 7 cut(s) 88, 162, 406, 842, 932, 1046, 1092
NlaIV GGNNCC 4 cut(s) 679, 703, 847, 1082
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 4 cut(s) 88, 162, 406, 1046
NspV TTCGAA 1 cut(s) 525
PciI ACATGT 3 cut(s) 84, 158, 402
PciSI GCTCTTC 1 cut(s) 916
PfeI GAWTC 1 cut(s) 868
PflFI GACNNNGTC 1 cut(s) 1175
PflMI CCANNNNNTGG 1 cut(s) 896
PkrI GCNGC 6 cut(s) 7, 219, 310, 934, 1028, 1057
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 208
PscI ACATGT 3 cut(s) 84, 158, 402
Psp6I CCWGG 2 cut(s) 691, 1173
PspGI CCWGG 2 cut(s) 691, 1173
PspN4I GGNNCC 4 cut(s) 679, 703, 847, 1082
PspPI GGNCC 2 cut(s) 226, 515
PsuI RGATCY 2 cut(s) 845, 1199
PsyI GACNNNGTC 1 cut(s) 1175
RsaI GTAC 3 cut(s) 151, 206, 730
RsaNI GTAC 3 cut(s) 150, 205, 729
SapI GCTCTTC 1 cut(s) 916
SaqAI TTAA 7 cut(s) 105, 117, 239, 249, 369, 431, 1071
SatI GCNGC 6 cut(s) 6, 218, 309, 933, 1027, 1056
Sau3AI GATC 8 cut(s) 70, 127, 445, 484, 643, 845, 976, 1199
Sau96I GGNCC 2 cut(s) 226, 515
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 2 cut(s) 693, 1175
SexAI ACCWGGT 1 cut(s) 1173
SfaNI GCATC 3 cut(s) 369, 928, 1118
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 2 cut(s) 226, 515
SmlI CTYRAG 3 cut(s) 176, 368, 595
SmoI CTYRAG 3 cut(s) 176, 368, 595
SnaBI TACGTA 1 cut(s) 208
Sse9I AATT 6 cut(s) 79, 233, 428, 449, 997, 1138
SsiI CCGC 5 cut(s) 461, 935, 993, 1027, 1181
SspI AATATT 2 cut(s) 43, 958
StyD4I CCNGG 2 cut(s) 691, 1173
TaaI ACNGT 3 cut(s) 827, 1080, 1103
TaiI ACGT 2 cut(s) 210, 334
TaqI TCGA 3 cut(s) 73, 525, 871
TasI AATT 6 cut(s) 79, 233, 428, 449, 997, 1138
TauI GCSGC 1 cut(s) 1029
TfiI GAWTC 1 cut(s) 868
Tru1I TTAA 7 cut(s) 105, 117, 239, 249, 369, 431, 1071
Tru9I TTAA 7 cut(s) 105, 117, 239, 249, 369, 431, 1071
TscAI CASTG 3 cut(s) 790, 832, 1108
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 5 cut(s) 5, 217, 308, 932, 1055
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 827
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 3 cut(s) 790, 832, 1108
Tth111I GACNNNGTC 1 cut(s) 1175
Van91I CCANNNNNTGG 1 cut(s) 896
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 226, 515
XceI RCATGY 4 cut(s) 88, 162, 406, 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 1181
XmiI GTMKAC 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.