gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 288 |
| AciI | CCGC | 3 cut(s) | 41, 286, 288 |
| AfaI | GTAC | 2 cut(s) | 7, 122 |
| AgsI | TTSAA | 1 cut(s) | 322 |
| AluBI | AGCT | 1 cut(s) | 230 |
| AluI | AGCT | 1 cut(s) | 230 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 1 cut(s) | 230 |
| AspS9I | GGNCC | 2 cut(s) | 113, 184 |
| AsuNHI | GCTAGC | 1 cut(s) | 59 |
| AvaII | GGWCC | 1 cut(s) | 113 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BciVI | GTATCC | 1 cut(s) | 148 |
| BfaI | CTAG | 3 cut(s) | 50, 60, 150 |
| BfuI | GTATCC | 1 cut(s) | 148 |
| BglII | AGATCT | 2 cut(s) | 245, 276 |
| BisI | GCNGC | 1 cut(s) | 231 |
| BlpI | GCTNAGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 232 |
| BmcAI | AGTACT | 1 cut(s) | 7 |
| Bme18I | GGWCC | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 2 cut(s) | 113, 184 |
| BmtI | GCTAGC | 1 cut(s) | 63 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseMII | CTCAG | 3 cut(s) | 158, 192, 287 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| Bsh1236I | CGCG | 1 cut(s) | 288 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BsnI | GGCC | 1 cut(s) | 185 |
| Bsp143I | GATC | 3 cut(s) | 217, 245, 276 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 201 |
| BspACI | CCGC | 3 cut(s) | 41, 286, 288 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspCNI | CTCAG | 3 cut(s) | 157, 193, 286 |
| BspFNI | CGCG | 1 cut(s) | 288 |
| BspOI | GCTAGC | 1 cut(s) | 63 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssMI | GATC | 3 cut(s) | 217, 245, 276 |
| Bst4CI | ACNGT | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 1 cut(s) | 61 |
| BstDEI | CTNAG | 3 cut(s) | 144, 201, 273 |
| BstDSI | CCRYGG | 1 cut(s) | 286 |
| BstFNI | CGCG | 1 cut(s) | 288 |
| BstKTI | GATC | 3 cut(s) | 220, 248, 279 |
| BstMBI | GATC | 3 cut(s) | 217, 245, 276 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 266 |
| BstUI | CGCG | 1 cut(s) | 288 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 2 cut(s) | 245, 276 |
| BstYI | RGATCY | 2 cut(s) | 245, 276 |
| BsuI | GTATCC | 1 cut(s) | 148 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 286 |
| BtsI | GCAGTG | 1 cut(s) | 255 |
| BtsIMutI | CAGTG | 1 cut(s) | 255 |
| Cac8I | GCNNGC | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 2 cut(s) | 113, 184 |
| Cfr42I | CCGCGG | 1 cut(s) | 289 |
| Csp6I | GTAC | 2 cut(s) | 6, 121 |
| CviAII | CATG | 1 cut(s) | 266 |
| CviJI | RGCY | 3 cut(s) | 149, 185, 230 |
| CviKI_1 | RGCY | 3 cut(s) | 149, 185, 230 |
| CviQI | GTAC | 2 cut(s) | 6, 121 |
| DdeI | CTNAG | 3 cut(s) | 144, 201, 273 |
| DpnI | GATC | 3 cut(s) | 219, 247, 278 |
| DpnII | GATC | 3 cut(s) | 217, 245, 276 |
| Eco47I | GGWCC | 1 cut(s) | 113 |
| EcoO109I | RGGNCCY | 1 cut(s) | 184 |
| FaeI | CATG | 1 cut(s) | 269 |
| FaiI | YATR | 7 cut(s) | 101, 169, 171, 251, 267, 332, 334 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 219, 251 |
| FatI | CATG | 1 cut(s) | 265 |
| FauNDI | CATATG | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 1 cut(s) | 231 |
| FspBI | CTAG | 3 cut(s) | 50, 60, 150 |
| GluI | GCNGC | 1 cut(s) | 231 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| Hin1II | CATG | 1 cut(s) | 269 |
| HinfI | GANTC | 2 cut(s) | 173, 210 |
| Hpy188I | TCNGA | 3 cut(s) | 13, 22, 276 |
| Hpy188III | TCNNGA | 1 cut(s) | 236 |
| HpyCH4III | ACNGT | 1 cut(s) | 133 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 266 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 201, 273 |
| Hsp92II | CATG | 1 cut(s) | 269 |
| KspI | CCGCGG | 1 cut(s) | 289 |
| Kzo9I | GATC | 3 cut(s) | 217, 245, 276 |
| LpnPI | CCDG | 1 cut(s) | 131 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| MaeI | CTAG | 3 cut(s) | 50, 60, 150 |
| MalI | GATC | 3 cut(s) | 219, 247, 278 |
| MboI | GATC | 3 cut(s) | 217, 245, 276 |
| MboII | GAAGA | 1 cut(s) | 284 |
| MflI | RGATCY | 2 cut(s) | 245, 276 |
| MluCI | AATT | 1 cut(s) | 96 |
| MlyI | GAGTC | 2 cut(s) | 167, 204 |
| MnlI | CCTC | 2 cut(s) | 175, 197 |
| MspA1I | CMGCKG | 1 cut(s) | 288 |
| MvnI | CGCG | 1 cut(s) | 288 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 266 |
| NdeI | CATATG | 1 cut(s) | 169 |
| NdeII | GATC | 3 cut(s) | 217, 245, 276 |
| NheI | GCTAGC | 1 cut(s) | 59 |
| NlaIII | CATG | 1 cut(s) | 269 |
| PkrI | GCNGC | 1 cut(s) | 232 |
| PleI | GAGTC | 2 cut(s) | 167, 204 |
| PpsI | GAGTC | 2 cut(s) | 167, 204 |
| PspPI | GGNCC | 2 cut(s) | 113, 184 |
| PsuI | RGATCY | 2 cut(s) | 245, 276 |
| RsaI | GTAC | 2 cut(s) | 7, 122 |
| RsaNI | GTAC | 2 cut(s) | 6, 121 |
| SacII | CCGCGG | 1 cut(s) | 289 |
| SatI | GCNGC | 1 cut(s) | 231 |
| Sau3AI | GATC | 3 cut(s) | 217, 245, 276 |
| Sau96I | GGNCC | 2 cut(s) | 113, 184 |
| ScaI | AGTACT | 1 cut(s) | 7 |
| SchI | GAGTC | 2 cut(s) | 167, 204 |
| SetI | ASST | 2 cut(s) | 51, 232 |
| Sfr303I | CCGCGG | 1 cut(s) | 289 |
| SgrBI | CCGCGG | 1 cut(s) | 289 |
| SinI | GGWCC | 1 cut(s) | 113 |
| Sse9I | AATT | 1 cut(s) | 96 |
| SsiI | CCGC | 3 cut(s) | 41, 286, 288 |
| SspMI | CTAG | 3 cut(s) | 50, 60, 150 |
| TaaI | ACNGT | 1 cut(s) | 133 |
| TasI | AATT | 1 cut(s) | 96 |
| TatI | WGTACW | 1 cut(s) | 5 |
| TscAI | CASTG | 1 cut(s) | 262 |
| TseI | GCWGC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 3 cut(s) | 86, 116, 306 |
| TspRI | CASTG | 1 cut(s) | 262 |
| VpaK11BI | GGWCC | 1 cut(s) | 113 |
| XspI | CTAG | 3 cut(s) | 50, 60, 150 |
| ZrmI | AGTACT | 1 cut(s) | 7 |