transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 206 | 5.8e-26 | gag-polypeptide of LTR copia-type |
| gag_pre-integrs | PF13976 | 475 - 533 | 4.3e-11 | GAG-pre-integrase domain |
| rve | PF00665 | 549 - 648 | 4.4e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 722 - 781 | 8.3e-22 | Retroviral polymerase SH3-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 810, 2069 |
| AclWI | GGATC | 4 cut(s) | 190, 459, 1253, 1465 |
| AcsI | RAATTY | 5 cut(s) | 238, 708, 1842, 2030, 2635 |
| AcuI | CTGAAG | 2 cut(s) | 1071, 1145 |
| AdeI | CACNNNGTG | 1 cut(s) | 1240 |
| AfaI | GTAC | 8 cut(s) | 142, 425, 1545, 1630, 1712, 1738, 2538, 2592 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2654 |
| AflII | CTTAAG | 1 cut(s) | 509 |
| AflIII | ACRYGT | 2 cut(s) | 1687, 2308 |
| AjnI | CCWGG | 2 cut(s) | 1033, 2248 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2276, 2308 |
| AluBI | AGCT | 8 cut(s) | 94, 308, 586, 1046, 1091, 1319, 1448, 2206 |
| AluI | AGCT | 8 cut(s) | 94, 308, 586, 1046, 1091, 1319, 1448, 2206 |
| Alw26I | GTCTC | 4 cut(s) | 52, 1150, 1309, 2649 |
| AlwI | GGATC | 4 cut(s) | 190, 459, 1253, 1465 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1256 |
| AoxI | GGCC | 4 cut(s) | 118, 1036, 1366, 1495 |
| ApeKI | GCWGC | 2 cut(s) | 605, 749 |
| ApoI | RAATTY | 5 cut(s) | 238, 708, 1842, 2030, 2635 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 626, 658 |
| AspS9I | GGNCC | 2 cut(s) | 1495, 1676 |
| AsuHPI | GGTGA | 4 cut(s) | 1354, 1711, 1877, 2349 |
| AvaII | GGWCC | 1 cut(s) | 1676 |
| AxyI | CCTNAGG | 1 cut(s) | 273 |
| BbsI | GAAGAC | 2 cut(s) | 453, 2094 |
| BbvI | GCAGC | 2 cut(s) | 592, 736 |
| BccI | CCATC | 8 cut(s) | 131, 163, 173, 208, 529, 1435, 1506, 1926 |
| BciT130I | CCWGG | 2 cut(s) | 1035, 2250 |
| BciVI | GTATCC | 1 cut(s) | 1702 |
| BclI | TGATCA | 1 cut(s) | 1324 |
| BcoDI | GTCTC | 4 cut(s) | 52, 1150, 1309, 2649 |
| BfaI | CTAG | 7 cut(s) | 354, 447, 1539, 1569, 1632, 2424, 2468 |
| BfmI | CTRYAG | 3 cut(s) | 787, 1208, 2532 |
| BfrI | CTTAAG | 1 cut(s) | 509 |
| BfuI | GTATCC | 1 cut(s) | 1702 |
| BisI | GCNGC | 2 cut(s) | 606, 750 |
| BlsI | GCNGC | 2 cut(s) | 607, 751 |
| BmcAI | AGTACT | 2 cut(s) | 425, 1712 |
| Bme1390I | CCNGG | 2 cut(s) | 1035, 2250 |
| Bme18I | GGWCC | 1 cut(s) | 1676 |
| BmgT120I | GGNCC | 2 cut(s) | 1495, 1676 |
| BmiI | GGNNCC | 3 cut(s) | 1677, 1678, 2039 |
| BmrFI | CCNGG | 2 cut(s) | 1035, 2250 |
| BmsI | GCATC | 5 cut(s) | 51, 1069, 2106, 2238, 2498 |
| BpiI | GAAGAC | 2 cut(s) | 453, 2094 |
| BpmI | CTGGAG | 1 cut(s) | 2162 |
| Bpu10I | CCTNAGC | 2 cut(s) | 431, 2361 |
| BpuEI | CTTGAG | 4 cut(s) | 22, 110, 245, 1124 |
| BsaJI | CCNNGG | 3 cut(s) | 702, 1004, 2249 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 181, 211, 253, 283, 1075, 1105, 2466, 2496 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2654 |
| Bse1I | ACTGG | 1 cut(s) | 1888 |
| Bse21I | CCTNAGG | 1 cut(s) | 273 |
| Bse3DI | GCAATG | 5 cut(s) | 669, 853, 898, 1200, 1794 |
| BseBI | CCWGG | 2 cut(s) | 1035, 2250 |
| BseDI | CCNNGG | 3 cut(s) | 702, 1004, 2249 |
| BseGI | GGATG | 5 cut(s) | 142, 1307, 1498, 2168, 2392 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2654 |
| BseMI | GCAATG | 5 cut(s) | 669, 853, 898, 1200, 1794 |
| BseNI | ACTGG | 1 cut(s) | 1888 |
| BseRI | GAGGAG | 1 cut(s) | 816 |
| BseXI | GCAGC | 2 cut(s) | 592, 736 |
| BsgI | GTGCAG | 2 cut(s) | 1977, 2442 |
| BshFI | GGCC | 4 cut(s) | 120, 1038, 1368, 1497 |
| BslFI | GGGAC | 1 cut(s) | 1662 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2654 |
| BsmAI | GTCTC | 4 cut(s) | 52, 1150, 1309, 2649 |
| BsmBI | CGTCTC | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 1662 |
| BsmI | GAATGC | 2 cut(s) | 448, 2082 |
| BsnI | GGCC | 4 cut(s) | 120, 1038, 1368, 1497 |
| Bsp143I | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| BspANI | GGCC | 4 cut(s) | 120, 1038, 1368, 1497 |
| BspLI | GGNNCC | 3 cut(s) | 1677, 1678, 2039 |
| BspPI | GGATC | 4 cut(s) | 190, 459, 1253, 1465 |
| BspQI | GCTCTTC | 1 cut(s) | 2562 |
| BspTI | CTTAAG | 1 cut(s) | 509 |
| BsrDI | GCAATG | 5 cut(s) | 669, 853, 898, 1200, 1794 |
| BsrI | ACTGG | 1 cut(s) | 1888 |
| BssECI | CCNNGG | 3 cut(s) | 702, 1004, 2249 |
| BssMI | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| BssT1I | CCWWGG | 2 cut(s) | 702, 1004 |
| Bst2UI | CCWGG | 2 cut(s) | 1035, 2250 |
| Bst4CI | ACNGT | 8 cut(s) | 145, 349, 413, 538, 1657, 2221, 2449, 2536 |
| Bst6I | CTCTTC | 3 cut(s) | 27, 1424, 2562 |
| BstAFI | CTTAAG | 1 cut(s) | 509 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 563, 1199 |
| BstC8I | GCNNGC | 3 cut(s) | 564, 1058, 1594 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2652 |
| BstF5I | GGATG | 5 cut(s) | 142, 1307, 1498, 2168, 2392 |
| BstKTI | GATC | 9 cut(s) | 185, 337, 454, 501, 593, 1248, 1327, 1460, 2503 |
| BstMAI | GTCTC | 4 cut(s) | 52, 1150, 1309, 2649 |
| BstMBI | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 91, 563, 668, 741, 1183, 1199 |
| BstNI | CCWGG | 2 cut(s) | 1035, 2250 |
| BstNSI | RCATGY | 4 cut(s) | 566, 1056, 1691, 2312 |
| BstSCI | CCNGG | 2 cut(s) | 1033, 2248 |
| BstSFI | CTRYAG | 3 cut(s) | 787, 1208, 2532 |
| BstV1I | GCAGC | 2 cut(s) | 592, 736 |
| BstV2I | GAAGAC | 2 cut(s) | 453, 2094 |
| BstX2I | RGATCY | 1 cut(s) | 182 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2034 |
| BstYI | RGATCY | 1 cut(s) | 182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 1702 |
| BsuRI | GGCC | 4 cut(s) | 120, 1038, 1368, 1497 |
| BtsCI | GGATG | 5 cut(s) | 142, 1307, 1498, 2168, 2392 |
| BtsI | GCAGTG | 2 cut(s) | 255, 1188 |
| BtsIMutI | CAGTG | 6 cut(s) | 255, 418, 1188, 1378, 2613, 2646 |
| Cac8I | GCNNGC | 3 cut(s) | 564, 1058, 1594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1256 |
| Cfr13I | GGNCC | 2 cut(s) | 1495, 1676 |
| Csp6I | GTAC | 8 cut(s) | 141, 424, 1544, 1629, 1711, 1737, 2537, 2591 |
| CviQI | GTAC | 8 cut(s) | 141, 424, 1544, 1629, 1711, 1737, 2537, 2591 |
| DpnI | GATC | 9 cut(s) | 184, 336, 453, 500, 592, 1247, 1326, 1459, 2502 |
| DpnII | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| DraIII | CACNNNGTG | 1 cut(s) | 1240 |
| Eam1104I | CTCTTC | 3 cut(s) | 27, 1424, 2562 |
| EarI | CTCTTC | 3 cut(s) | 27, 1424, 2562 |
| Eco130I | CCWWGG | 2 cut(s) | 702, 1004 |
| Eco147I | AGGCCT | 1 cut(s) | 1368 |
| Eco47I | GGWCC | 1 cut(s) | 1676 |
| Eco57I | CTGAAG | 2 cut(s) | 1071, 1145 |
| Eco81I | CCTNAGG | 1 cut(s) | 273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2652 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1676 |
| EcoRI | GAATTC | 1 cut(s) | 2635 |
| EcoRII | CCWGG | 2 cut(s) | 1033, 2248 |
| EcoT14I | CCWWGG | 2 cut(s) | 702, 1004 |
| ErhI | CCWWGG | 2 cut(s) | 702, 1004 |
| Esp3I | CGTCTC | 1 cut(s) | 52 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 207, 239, 2216, 2248, 2394, 2426 |
| FaqI | GGGAC | 1 cut(s) | 1662 |
| FbaI | TGATCA | 1 cut(s) | 1324 |
| Fnu4HI | GCNGC | 2 cut(s) | 606, 750 |
| FokI | GGATG | 5 cut(s) | 149, 1294, 1485, 2175, 2379 |
| Fsp4HI | GCNGC | 2 cut(s) | 606, 750 |
| FspBI | CTAG | 7 cut(s) | 354, 447, 1539, 1569, 1632, 2424, 2468 |
| GluI | GCNGC | 2 cut(s) | 606, 750 |
| GsuI | CTGGAG | 1 cut(s) | 2162 |
| HaeIII | GGCC | 4 cut(s) | 120, 1038, 1368, 1497 |
| HincII | GTYRAC | 1 cut(s) | 1112 |
| HindII | GTYRAC | 1 cut(s) | 1112 |
| HphI | GGTGA | 4 cut(s) | 1354, 1711, 1877, 2349 |
| Hpy166II | GTNNAC | 3 cut(s) | 518, 1112, 1602 |
| Hpy8I | GTNNAC | 3 cut(s) | 518, 1112, 1602 |
| Hpy99I | CGWCG | 1 cut(s) | 1411 |
| HpyAV | CCTTC | 9 cut(s) | 131, 1512, 1694, 1732, 2145, 2289, 2430, 2568, 2622 |
| HpyCH4III | ACNGT | 8 cut(s) | 145, 349, 413, 538, 1657, 2221, 2449, 2536 |
| HpyCH4IV | ACGT | 1 cut(s) | 1406 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 91, 563, 668, 741, 1183, 1199 |
| HpySE526I | ACGT | 1 cut(s) | 1406 |
| KflI | GGGWCCC | 1 cut(s) | 1676 |
| Ksp22I | TGATCA | 1 cut(s) | 1324 |
| Kzo9I | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| LguI | GCTCTTC | 1 cut(s) | 2562 |
| LmnI | GCTCC | 3 cut(s) | 571, 1096, 2211 |
| Lsp1109I | GCAGC | 2 cut(s) | 592, 736 |
| LweI | GCATC | 5 cut(s) | 51, 1069, 2106, 2238, 2498 |
| MaeI | CTAG | 7 cut(s) | 354, 447, 1539, 1569, 1632, 2424, 2468 |
| MaeII | ACGT | 1 cut(s) | 1406 |
| MaeIII | GTNAC | 9 cut(s) | 16, 626, 646, 974, 995, 1025, 1342, 1465, 1813 |
| MalI | GATC | 9 cut(s) | 184, 336, 453, 500, 592, 1247, 1326, 1459, 2502 |
| MboI | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| MboII | GAAGA | 9 cut(s) | 14, 227, 453, 1257, 1411, 1422, 1821, 2094, 2579 |
| MfeI | CAATTG | 1 cut(s) | 2052 |
| MflI | RGATCY | 1 cut(s) | 182 |
| MmeI | TCCRAC | 3 cut(s) | 890, 1730, 2543 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1193, 1665, 2046 |
| MspA1I | CMGCKG | 2 cut(s) | 94, 1319 |
| MspCI | CTTAAG | 1 cut(s) | 509 |
| MspR9I | CCNGG | 2 cut(s) | 1035, 2250 |
| MunI | CAATTG | 1 cut(s) | 2052 |
| Mva1269I | GAATGC | 2 cut(s) | 448, 2082 |
| MvaI | CCWGG | 2 cut(s) | 1035, 2250 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 91, 563, 668, 741, 1183, 1199 |
| NdeII | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| NlaIV | GGNNCC | 3 cut(s) | 1677, 1678, 2039 |
| NmuCI | GTSAC | 7 cut(s) | 16, 626, 646, 1025, 1342, 1465, 1813 |
| NspI | RCATGY | 4 cut(s) | 566, 1056, 1691, 2312 |
| PaeI | GCATGC | 1 cut(s) | 566 |
| PceI | AGGCCT | 1 cut(s) | 1368 |
| PciI | ACATGT | 2 cut(s) | 1687, 2308 |
| PciSI | GCTCTTC | 1 cut(s) | 2562 |
| PctI | GAATGC | 2 cut(s) | 448, 2082 |
| PfeI | GAWTC | 6 cut(s) | 505, 698, 828, 873, 934, 1253 |
| PkrI | GCNGC | 2 cut(s) | 607, 751 |
| PpuMI | RGGWCCY | 1 cut(s) | 1676 |
| PscI | ACATGT | 2 cut(s) | 1687, 2308 |
| PsiI | TTATAA | 2 cut(s) | 810, 2069 |
| Psp5II | RGGWCCY | 1 cut(s) | 1676 |
| Psp6I | CCWGG | 2 cut(s) | 1033, 2248 |
| PspGI | CCWGG | 2 cut(s) | 1033, 2248 |
| PspN4I | GGNNCC | 3 cut(s) | 1677, 1678, 2039 |
| PspPI | GGNCC | 2 cut(s) | 1495, 1676 |
| PspPPI | RGGWCCY | 1 cut(s) | 1676 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1256 |
| PsuI | RGATCY | 1 cut(s) | 182 |
| PvuII | CAGCTG | 2 cut(s) | 94, 1319 |
| RsaI | GTAC | 8 cut(s) | 142, 425, 1545, 1630, 1712, 1738, 2538, 2592 |
| RsaNI | GTAC | 8 cut(s) | 141, 424, 1544, 1629, 1711, 1737, 2537, 2591 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1193, 1665, 2046 |
| SapI | GCTCTTC | 1 cut(s) | 2562 |
| SatI | GCNGC | 2 cut(s) | 606, 750 |
| Sau3AI | GATC | 9 cut(s) | 182, 334, 451, 498, 590, 1245, 1324, 1457, 2500 |
| Sau96I | GGNCC | 2 cut(s) | 1495, 1676 |
| ScaI | AGTACT | 2 cut(s) | 425, 1712 |
| ScrFI | CCNGG | 2 cut(s) | 1035, 2250 |
| SfaNI | GCATC | 5 cut(s) | 51, 1069, 2106, 2238, 2498 |
| SfcI | CTRYAG | 3 cut(s) | 787, 1208, 2532 |
| SinI | GGWCC | 1 cut(s) | 1676 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1193, 1665, 2046 |
| SmlI | CTYRAG | 5 cut(s) | 37, 125, 224, 509, 1103 |
| SmoI | CTYRAG | 5 cut(s) | 37, 125, 224, 509, 1103 |
| SphI | GCATGC | 1 cut(s) | 566 |
| SseBI | AGGCCT | 1 cut(s) | 1368 |
| SspMI | CTAG | 7 cut(s) | 354, 447, 1539, 1569, 1632, 2424, 2468 |
| StuI | AGGCCT | 1 cut(s) | 1368 |
| StyD4I | CCNGG | 2 cut(s) | 1033, 2248 |
| StyI | CCWWGG | 2 cut(s) | 702, 1004 |
| TaaI | ACNGT | 8 cut(s) | 145, 349, 413, 538, 1657, 2221, 2449, 2536 |
| TaiI | ACGT | 1 cut(s) | 1409 |
| TaqI | TCGA | 5 cut(s) | 60, 589, 1409, 1741, 2305 |
| TaqII | GACCGA | 1 cut(s) | 40 |
| TatI | WGTACW | 6 cut(s) | 423, 1628, 1710, 1736, 2536, 2590 |
| TfiI | GAWTC | 6 cut(s) | 505, 698, 828, 873, 934, 1253 |
| TscAI | CASTG | 6 cut(s) | 262, 418, 1195, 1378, 2613, 2646 |
| TseFI | GTSAC | 7 cut(s) | 16, 626, 646, 1025, 1342, 1465, 1813 |
| TseI | GCWGC | 2 cut(s) | 605, 749 |
| Tsp45I | GTSAC | 7 cut(s) | 16, 626, 646, 1025, 1342, 1465, 1813 |
| TspRI | CASTG | 6 cut(s) | 262, 418, 1195, 1378, 2613, 2646 |
| Vha464I | CTTAAG | 1 cut(s) | 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 1676 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2652 |
| XapI | RAATTY | 5 cut(s) | 238, 708, 1842, 2030, 2635 |
| XbaI | TCTAGA | 1 cut(s) | 1538 |
| XceI | RCATGY | 4 cut(s) | 566, 1056, 1691, 2312 |
| XspI | CTAG | 7 cut(s) | 354, 447, 1539, 1569, 1632, 2424, 2468 |
| ZrmI | AGTACT | 2 cut(s) | 425, 1712 |