transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 194 | 1.5e-22 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 863 |
| AccB1I | GGYRCC | 1 cut(s) | 911 |
| AccI | GTMKAC | 1 cut(s) | 764 |
| AciI | CCGC | 1 cut(s) | 837 |
| AclWI | GGATC | 1 cut(s) | 1362 |
| AcsI | RAATTY | 3 cut(s) | 104, 471, 581 |
| AcuI | CTGAAG | 4 cut(s) | 150, 462, 813, 1535 |
| AfaI | GTAC | 3 cut(s) | 660, 1069, 1318 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AgeI | ACCGGT | 1 cut(s) | 1214 |
| AhlI | ACTAGT | 1 cut(s) | 1645 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 891, 923 |
| Alw26I | GTCTC | 2 cut(s) | 138, 690 |
| AlwI | GGATC | 1 cut(s) | 1362 |
| Ama87I | CYCGRG | 1 cut(s) | 1689 |
| ApeKI | GCWGC | 6 cut(s) | 73, 434, 437, 788, 869, 1627 |
| ApoI | RAATTY | 3 cut(s) | 104, 471, 581 |
| AsiGI | ACCGGT | 1 cut(s) | 1214 |
| AspS9I | GGNCC | 3 cut(s) | 561, 965, 1478 |
| AsuHPI | GGTGA | 1 cut(s) | 937 |
| AvaI | CYCGRG | 1 cut(s) | 1689 |
| AvaII | GGWCC | 3 cut(s) | 561, 965, 1478 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1059, 1092 |
| BanI | GGYRCC | 1 cut(s) | 911 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| BbvI | GCAGC | 6 cut(s) | 85, 421, 449, 800, 881, 1639 |
| BccI | CCATC | 2 cut(s) | 107, 149 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 65, 99, 1575, 1609 |
| BclI | TGATCA | 1 cut(s) | 457 |
| BcoDI | GTCTC | 2 cut(s) | 138, 690 |
| BcuI | ACTAGT | 1 cut(s) | 1645 |
| BfaI | CTAG | 8 cut(s) | 486, 513, 690, 873, 891, 1245, 1646, 1671 |
| BfmI | CTRYAG | 2 cut(s) | 387, 435 |
| BisI | GCNGC | 6 cut(s) | 74, 435, 438, 789, 870, 1628 |
| BlsI | GCNGC | 6 cut(s) | 75, 436, 439, 790, 871, 1629 |
| Bme18I | GGWCC | 3 cut(s) | 561, 965, 1478 |
| BmeT110I | CYCGRG | 1 cut(s) | 1689 |
| BmgT120I | GGNCC | 3 cut(s) | 561, 965, 1478 |
| BmiI | GGNNCC | 2 cut(s) | 89, 913 |
| BmsI | GCATC | 3 cut(s) | 60, 238, 1013 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 1749 |
| BpuEI | CTTGAG | 1 cut(s) | 993 |
| BsaI | GGTCTC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 1 cut(s) | 91 |
| BsaWI | WCCGGW | 1 cut(s) | 1214 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse118I | RCCGGY | 1 cut(s) | 1214 |
| Bse1I | ACTGG | 4 cut(s) | 634, 720, 772, 859 |
| Bse3DI | GCAATG | 6 cut(s) | 846, 927, 952, 1006, 1105, 1420 |
| BseDI | CCNNGG | 1 cut(s) | 91 |
| BseGI | GGATG | 2 cut(s) | 275, 1750 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseMI | GCAATG | 6 cut(s) | 846, 927, 952, 1006, 1105, 1420 |
| BseMII | CTCAG | 4 cut(s) | 149, 318, 1539, 1550 |
| BseNI | ACTGG | 4 cut(s) | 634, 720, 772, 859 |
| BseXI | GCAGC | 6 cut(s) | 85, 421, 449, 800, 881, 1639 |
| BsgI | GTGCAG | 3 cut(s) | 597, 1489, 1661 |
| BshNI | GGYRCC | 1 cut(s) | 911 |
| BshTI | ACCGGT | 1 cut(s) | 1214 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1689 |
| BsiSI | CCGG | 1 cut(s) | 1215 |
| BslFI | GGGAC | 2 cut(s) | 437, 1706 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BsmAI | GTCTC | 2 cut(s) | 138, 690 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 437, 1706 |
| Bso31I | GGTCTC | 1 cut(s) | 690 |
| BsoBI | CYCGRG | 1 cut(s) | 1689 |
| Bsp143I | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| Bsp19I | CCATGG | 1 cut(s) | 91 |
| BspACI | CCGC | 1 cut(s) | 837 |
| BspCNI | CTCAG | 4 cut(s) | 148, 319, 1538, 1549 |
| BspLI | GGNNCC | 2 cut(s) | 89, 913 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspPI | GGATC | 1 cut(s) | 1362 |
| BspT107I | GGYRCC | 1 cut(s) | 911 |
| BspTNI | GGTCTC | 1 cut(s) | 690 |
| BsrDI | GCAATG | 6 cut(s) | 846, 927, 952, 1006, 1105, 1420 |
| BsrFI | RCCGGY | 1 cut(s) | 1214 |
| BsrI | ACTGG | 4 cut(s) | 634, 720, 772, 859 |
| BssAI | RCCGGY | 1 cut(s) | 1214 |
| BssECI | CCNNGG | 1 cut(s) | 91 |
| BssMI | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| BssT1I | CCWWGG | 1 cut(s) | 91 |
| Bst4CI | ACNGT | 2 cut(s) | 658, 1298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1493 |
| BstDEI | CTNAG | 5 cut(s) | 135, 327, 1320, 1525, 1536 |
| BstDSI | CCRYGG | 1 cut(s) | 91 |
| BstF5I | GGATG | 2 cut(s) | 275, 1750 |
| BstKTI | GATC | 4 cut(s) | 460, 846, 1357, 1396 |
| BstMAI | GTCTC | 2 cut(s) | 138, 690 |
| BstMBI | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 187, 749, 1493 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 435 |
| BstV1I | GCAGC | 6 cut(s) | 85, 421, 449, 800, 881, 1639 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 922 |
| BtgI | CCRYGG | 1 cut(s) | 91 |
| BtsCI | GGATG | 2 cut(s) | 275, 1750 |
| BtsIMutI | CAGTG | 2 cut(s) | 727, 1303 |
| Cfr10I | RCCGGY | 1 cut(s) | 1214 |
| Cfr13I | GGNCC | 3 cut(s) | 561, 965, 1478 |
| Csp6I | GTAC | 3 cut(s) | 659, 1068, 1317 |
| CspAI | ACCGGT | 1 cut(s) | 1214 |
| CviAII | CATG | 9 cut(s) | 26, 92, 451, 509, 760, 1173, 1254, 1268, 1333 |
| CviQI | GTAC | 3 cut(s) | 659, 1068, 1317 |
| DdeI | CTNAG | 5 cut(s) | 135, 327, 1320, 1525, 1536 |
| DpnI | GATC | 4 cut(s) | 459, 845, 1356, 1395 |
| DpnII | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| DraI | TTTAAA | 2 cut(s) | 412, 1155 |
| Eco130I | CCWWGG | 1 cut(s) | 91 |
| Eco31I | GGTCTC | 1 cut(s) | 690 |
| Eco47I | GGWCC | 3 cut(s) | 561, 965, 1478 |
| Eco57I | CTGAAG | 4 cut(s) | 150, 462, 813, 1535 |
| Eco88I | CYCGRG | 1 cut(s) | 1689 |
| EcoO109I | RGGNCCY | 2 cut(s) | 561, 1478 |
| EcoRI | GAATTC | 1 cut(s) | 581 |
| EcoT14I | CCWWGG | 1 cut(s) | 91 |
| EcoT22I | ATGCAT | 3 cut(s) | 319, 1006, 1123 |
| ErhI | CCWWGG | 1 cut(s) | 91 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 9 cut(s) | 29, 95, 454, 512, 763, 1176, 1257, 1271, 1336 |
| FaqI | GGGAC | 2 cut(s) | 437, 1706 |
| FatI | CATG | 9 cut(s) | 25, 91, 450, 508, 759, 1172, 1253, 1267, 1332 |
| FauNDI | CATATG | 2 cut(s) | 1117, 1123 |
| FbaI | TGATCA | 1 cut(s) | 457 |
| FblI | GTMKAC | 1 cut(s) | 764 |
| Fnu4HI | GCNGC | 6 cut(s) | 74, 435, 438, 789, 870, 1628 |
| FokI | GGATG | 2 cut(s) | 282, 1737 |
| Fsp4HI | GCNGC | 6 cut(s) | 74, 435, 438, 789, 870, 1628 |
| FspBI | CTAG | 8 cut(s) | 486, 513, 690, 873, 891, 1245, 1646, 1671 |
| GluI | GCNGC | 6 cut(s) | 74, 435, 438, 789, 870, 1628 |
| GsuI | CTGGAG | 1 cut(s) | 1749 |
| HapII | CCGG | 1 cut(s) | 1215 |
| Hin1II | CATG | 9 cut(s) | 29, 95, 454, 512, 763, 1176, 1257, 1271, 1336 |
| HincII | GTYRAC | 1 cut(s) | 1454 |
| HindII | GTYRAC | 1 cut(s) | 1454 |
| HindIII | AAGCTT | 1 cut(s) | 1719 |
| HinfI | GANTC | 6 cut(s) | 383, 899, 1205, 1442, 1472, 1727 |
| HpaII | CCGG | 1 cut(s) | 1215 |
| HphI | GGTGA | 1 cut(s) | 937 |
| Hpy166II | GTNNAC | 3 cut(s) | 765, 1294, 1454 |
| Hpy8I | GTNNAC | 3 cut(s) | 765, 1294, 1454 |
| HpyAV | CCTTC | 4 cut(s) | 766, 837, 1129, 1279 |
| HpyCH4III | ACNGT | 2 cut(s) | 658, 1298 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 187, 749, 1493 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 327, 1320, 1525, 1536 |
| Hsp92II | CATG | 9 cut(s) | 29, 95, 454, 512, 763, 1176, 1257, 1271, 1336 |
| Ksp22I | TGATCA | 1 cut(s) | 457 |
| Kzo9I | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| LmnI | GCTCC | 4 cut(s) | 87, 199, 757, 1379 |
| Lsp1109I | GCAGC | 6 cut(s) | 85, 421, 449, 800, 881, 1639 |
| LweI | GCATC | 3 cut(s) | 60, 238, 1013 |
| MaeI | CTAG | 8 cut(s) | 486, 513, 690, 873, 891, 1245, 1646, 1671 |
| MaeIII | GTNAC | 3 cut(s) | 445, 956, 1528 |
| MalI | GATC | 4 cut(s) | 459, 845, 1356, 1395 |
| MboI | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| MboII | GAAGA | 8 cut(s) | 74, 156, 161, 563, 894, 1139, 1372, 1451 |
| MlyI | GAGTC | 1 cut(s) | 1481 |
| MmeI | TCCRAC | 2 cut(s) | 177, 1318 |
| Mph1103I | ATGCAT | 3 cut(s) | 319, 1006, 1123 |
| MspA1I | CMGCKG | 1 cut(s) | 440 |
| MspI | CCGG | 1 cut(s) | 1215 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 187, 749, 1493 |
| NcoI | CCATGG | 1 cut(s) | 91 |
| NdeI | CATATG | 2 cut(s) | 1117, 1123 |
| NdeII | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| NlaIII | CATG | 9 cut(s) | 29, 95, 454, 512, 763, 1176, 1257, 1271, 1336 |
| NlaIV | GGNNCC | 2 cut(s) | 89, 913 |
| NsiI | ATGCAT | 3 cut(s) | 319, 1006, 1123 |
| PfeI | GAWTC | 5 cut(s) | 383, 899, 1205, 1442, 1727 |
| PinAI | ACCGGT | 1 cut(s) | 1214 |
| PkrI | GCNGC | 6 cut(s) | 75, 436, 439, 790, 871, 1629 |
| PleI | GAGTC | 1 cut(s) | 1480 |
| PpsI | GAGTC | 1 cut(s) | 1480 |
| PpuMI | RGGWCCY | 2 cut(s) | 561, 1478 |
| PsiI | TTATAA | 1 cut(s) | 863 |
| Psp5II | RGGWCCY | 2 cut(s) | 561, 1478 |
| PspN4I | GGNNCC | 2 cut(s) | 89, 913 |
| PspPI | GGNCC | 3 cut(s) | 561, 965, 1478 |
| PspPPI | RGGWCCY | 2 cut(s) | 561, 1478 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RsaI | GTAC | 3 cut(s) | 660, 1069, 1318 |
| RsaNI | GTAC | 3 cut(s) | 659, 1068, 1317 |
| SatI | GCNGC | 6 cut(s) | 74, 435, 438, 789, 870, 1628 |
| Sau3AI | GATC | 4 cut(s) | 457, 843, 1354, 1393 |
| Sau96I | GGNCC | 3 cut(s) | 561, 965, 1478 |
| SchI | GAGTC | 1 cut(s) | 1481 |
| SfaNI | GCATC | 3 cut(s) | 60, 238, 1013 |
| SfcI | CTRYAG | 2 cut(s) | 387, 435 |
| SinI | GGWCC | 3 cut(s) | 561, 965, 1478 |
| SmlI | CTYRAG | 1 cut(s) | 1008 |
| SmoI | CTYRAG | 1 cut(s) | 1008 |
| SpeI | ACTAGT | 1 cut(s) | 1645 |
| SsiI | CCGC | 1 cut(s) | 837 |
| SspMI | CTAG | 8 cut(s) | 486, 513, 690, 873, 891, 1245, 1646, 1671 |
| StyI | CCWWGG | 1 cut(s) | 91 |
| TaaI | ACNGT | 2 cut(s) | 658, 1298 |
| TaqI | TCGA | 3 cut(s) | 281, 585, 611 |
| TfiI | GAWTC | 5 cut(s) | 383, 899, 1205, 1442, 1727 |
| TscAI | CASTG | 2 cut(s) | 727, 1303 |
| TseI | GCWGC | 6 cut(s) | 73, 434, 437, 788, 869, 1627 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| TspRI | CASTG | 2 cut(s) | 727, 1303 |
| VpaK11BI | GGWCC | 3 cut(s) | 561, 965, 1478 |
| XapI | RAATTY | 3 cut(s) | 104, 471, 581 |
| XmiI | GTMKAC | 1 cut(s) | 764 |
| XspI | CTAG | 8 cut(s) | 486, 513, 690, 873, 891, 1245, 1646, 1671 |
| Zsp2I | ATGCAT | 3 cut(s) | 319, 1006, 1123 |