ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 65 - 205 | 5.4e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AciI | CCGC | 5 cut(s) | 173, 421, 479, 482, 641 |
| AclWI | GGATC | 1 cut(s) | 242 |
| AcoI | YGGCCR | 3 cut(s) | 147, 357, 705 |
| AcsI | RAATTY | 2 cut(s) | 48, 626 |
| AcuI | CTGAAG | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 409 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 2 cut(s) | 23, 476 |
| AjnI | CCWGG | 1 cut(s) | 408 |
| AluBI | AGCT | 3 cut(s) | 329, 388, 452 |
| AluI | AGCT | 3 cut(s) | 329, 388, 452 |
| Alw21I | GWGCWC | 1 cut(s) | 331 |
| Alw26I | GTCTC | 2 cut(s) | 237, 492 |
| AlwI | GGATC | 1 cut(s) | 242 |
| Ama87I | CYCGRG | 1 cut(s) | 573 |
| AoxI | GGCC | 3 cut(s) | 147, 357, 705 |
| ApoI | RAATTY | 2 cut(s) | 48, 626 |
| AseI | ATTAAT | 1 cut(s) | 267 |
| AspLEI | GCGC | 1 cut(s) | 420 |
| AspS9I | GGNCC | 1 cut(s) | 693 |
| AsuNHI | GCTAGC | 1 cut(s) | 395 |
| AvaI | CYCGRG | 1 cut(s) | 573 |
| AvaII | GGWCC | 1 cut(s) | 693 |
| BalI | TGGCCA | 2 cut(s) | 359, 707 |
| BanII | GRGCYC | 1 cut(s) | 331 |
| BauI | CACGAG | 1 cut(s) | 375 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 331 |
| BccI | CCATC | 2 cut(s) | 544, 572 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 200, 234, 539, 573 |
| BciT130I | CCWGG | 1 cut(s) | 410 |
| BciVI | GTATCC | 1 cut(s) | 530 |
| BcoDI | GTCTC | 2 cut(s) | 237, 492 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BfoI | RGCGCY | 1 cut(s) | 421 |
| BfuI | GTATCC | 1 cut(s) | 530 |
| BisI | GCNGC | 3 cut(s) | 421, 480, 641 |
| BlpI | GCTNAGC | 2 cut(s) | 579, 636 |
| BlsI | GCNGC | 3 cut(s) | 422, 481, 642 |
| Bme1390I | CCNGG | 1 cut(s) | 410 |
| Bme18I | GGWCC | 1 cut(s) | 693 |
| BmeT110I | CYCGRG | 1 cut(s) | 573 |
| BmgT120I | GGNCC | 1 cut(s) | 693 |
| BmrFI | CCNGG | 1 cut(s) | 410 |
| BmtI | GCTAGC | 1 cut(s) | 399 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 2 cut(s) | 404, 431 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 579, 636 |
| BsaI | GGTCTC | 2 cut(s) | 237, 492 |
| BsaJI | CCNNGG | 3 cut(s) | 150, 408, 696 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 409 |
| Bse1I | ACTGG | 6 cut(s) | 186, 236, 273, 348, 360, 387 |
| BseBI | CCWGG | 1 cut(s) | 410 |
| BseDI | CCNNGG | 3 cut(s) | 150, 408, 696 |
| BseGI | GGATG | 1 cut(s) | 610 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 409 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseNI | ACTGG | 6 cut(s) | 186, 236, 273, 348, 360, 387 |
| BseRI | GAGGAG | 1 cut(s) | 720 |
| BsgI | GTGCAG | 1 cut(s) | 298 |
| BshFI | GGCC | 3 cut(s) | 149, 359, 707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 331 |
| BsiHKCI | CYCGRG | 1 cut(s) | 573 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 409 |
| BsmAI | GTCTC | 2 cut(s) | 237, 492 |
| BsmI | GAATGC | 1 cut(s) | 251 |
| BsnI | GGCC | 3 cut(s) | 149, 359, 707 |
| Bso31I | GGTCTC | 2 cut(s) | 237, 492 |
| BsoBI | CYCGRG | 1 cut(s) | 573 |
| Bsp1286I | GDGCHC | 1 cut(s) | 331 |
| Bsp143I | GATC | 4 cut(s) | 234, 469, 499, 717 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 579, 636 |
| BspACI | CCGC | 5 cut(s) | 173, 421, 479, 482, 641 |
| BspANI | GGCC | 3 cut(s) | 149, 359, 707 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspHI | TCATGA | 1 cut(s) | 714 |
| BspOI | GCTAGC | 1 cut(s) | 399 |
| BspPI | GGATC | 1 cut(s) | 242 |
| BspTNI | GGTCTC | 2 cut(s) | 237, 492 |
| BsrI | ACTGG | 6 cut(s) | 186, 236, 273, 348, 360, 387 |
| BssECI | CCNNGG | 3 cut(s) | 150, 408, 696 |
| BssMI | GATC | 4 cut(s) | 234, 469, 499, 717 |
| BssSI | CACGAG | 1 cut(s) | 375 |
| BssT1I | CCWWGG | 1 cut(s) | 696 |
| Bst2BI | CACGAG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 1 cut(s) | 410 |
| Bst6I | CTCTTC | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 2 cut(s) | 286, 397 |
| BstDEI | CTNAG | 3 cut(s) | 122, 579, 636 |
| BstF5I | GGATG | 1 cut(s) | 610 |
| BstH2I | RGCGCY | 1 cut(s) | 421 |
| BstHHI | GCGC | 1 cut(s) | 420 |
| BstKTI | GATC | 4 cut(s) | 237, 472, 502, 720 |
| BstMAI | GTCTC | 2 cut(s) | 237, 492 |
| BstMBI | GATC | 4 cut(s) | 234, 469, 499, 717 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 365 |
| BstNI | CCWGG | 1 cut(s) | 410 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 408 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BsuI | GTATCC | 1 cut(s) | 530 |
| BsuRI | GGCC | 3 cut(s) | 149, 359, 707 |
| BtsCI | GGATG | 1 cut(s) | 610 |
| BtsI | GCAGTG | 1 cut(s) | 170 |
| BtsIMutI | CAGTG | 1 cut(s) | 170 |
| Cac8I | GCNNGC | 2 cut(s) | 286, 397 |
| CciI | TCATGA | 1 cut(s) | 714 |
| CfoI | GCGC | 1 cut(s) | 420 |
| Cfr13I | GGNCC | 1 cut(s) | 693 |
| Csp6I | GTAC | 1 cut(s) | 380 |
| CviAII | CATG | 3 cut(s) | 136, 424, 715 |
| CviQI | GTAC | 1 cut(s) | 380 |
| DdeI | CTNAG | 3 cut(s) | 122, 579, 636 |
| DpnI | GATC | 4 cut(s) | 236, 471, 501, 719 |
| DpnII | GATC | 4 cut(s) | 234, 469, 499, 717 |
| EaeI | YGGCCR | 3 cut(s) | 147, 357, 705 |
| Eam1104I | CTCTTC | 1 cut(s) | 151 |
| EarI | CTCTTC | 1 cut(s) | 151 |
| Ecl136II | GAGCTC | 1 cut(s) | 329 |
| Eco130I | CCWWGG | 1 cut(s) | 696 |
| Eco24I | GRGCYC | 1 cut(s) | 331 |
| Eco31I | GGTCTC | 2 cut(s) | 237, 492 |
| Eco47I | GGWCC | 1 cut(s) | 693 |
| Eco53kI | GAGCTC | 1 cut(s) | 329 |
| Eco57I | CTGAAG | 1 cut(s) | 410 |
| Eco88I | CYCGRG | 1 cut(s) | 573 |
| EcoICRI | GAGCTC | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 408 |
| EcoT14I | CCWWGG | 1 cut(s) | 696 |
| EcoT38I | GRGCYC | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 696 |
| FaeI | CATG | 3 cut(s) | 139, 427, 718 |
| FatI | CATG | 3 cut(s) | 135, 423, 714 |
| FauI | CCCGC | 1 cut(s) | 475 |
| FauNDI | CATATG | 1 cut(s) | 544 |
| Fnu4HI | GCNGC | 3 cut(s) | 421, 480, 641 |
| FokI | GGATG | 1 cut(s) | 617 |
| FriOI | GRGCYC | 1 cut(s) | 331 |
| Fsp4HI | GCNGC | 3 cut(s) | 421, 480, 641 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GlaI | GCGC | 1 cut(s) | 419 |
| GluI | GCNGC | 3 cut(s) | 421, 480, 641 |
| GsuI | CTGGAG | 2 cut(s) | 404, 431 |
| HaeII | RGCGCY | 1 cut(s) | 421 |
| HaeIII | GGCC | 3 cut(s) | 149, 359, 707 |
| HhaI | GCGC | 1 cut(s) | 420 |
| Hin1II | CATG | 3 cut(s) | 139, 427, 718 |
| Hin6I | GCGC | 1 cut(s) | 418 |
| HinP1I | GCGC | 1 cut(s) | 418 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 323, 380 |
| Hpy188I | TCNGA | 1 cut(s) | 296 |
| Hpy188III | TCNNGA | 7 cut(s) | 121, 181, 238, 256, 473, 503, 715 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 323, 380 |
| Hpy99I | CGWCG | 1 cut(s) | 300 |
| HpyAV | CCTTC | 1 cut(s) | 385 |
| HpyCH4V | TGCA | 2 cut(s) | 315, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 365 |
| HpyF3I | CTNAG | 3 cut(s) | 122, 579, 636 |
| Hsp92II | CATG | 3 cut(s) | 139, 427, 718 |
| HspAI | GCGC | 1 cut(s) | 418 |
| Kzo9I | GATC | 4 cut(s) | 234, 469, 499, 717 |
| LmnI | GCTCC | 2 cut(s) | 385, 733 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeIII | GTNAC | 1 cut(s) | 586 |
| MalI | GATC | 4 cut(s) | 236, 471, 501, 719 |
| MboI | GATC | 4 cut(s) | 234, 469, 499, 717 |
| MboII | GAAGA | 3 cut(s) | 168, 206, 608 |
| MhlI | GDGCHC | 1 cut(s) | 331 |
| MlsI | TGGCCA | 2 cut(s) | 359, 707 |
| MluCI | AATT | 6 cut(s) | 48, 85, 510, 599, 626, 656 |
| MluNI | TGGCCA | 2 cut(s) | 359, 707 |
| MmeI | TCCRAC | 3 cut(s) | 94, 318, 319 |
| MnlI | CCTC | 8 cut(s) | 36, 51, 67, 73, 145, 410, 571, 741 |
| Mox20I | TGGCCA | 2 cut(s) | 359, 707 |
| MscI | TGGCCA | 2 cut(s) | 359, 707 |
| MseI | TTAA | 5 cut(s) | 140, 267, 509, 525, 659 |
| MslI | CAYNNNNRTG | 2 cut(s) | 428, 713 |
| Msp20I | TGGCCA | 2 cut(s) | 359, 707 |
| MspR9I | CCNGG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 365 |
| NdeI | CATATG | 1 cut(s) | 544 |
| NdeII | GATC | 4 cut(s) | 234, 469, 499, 717 |
| NheI | GCTAGC | 1 cut(s) | 395 |
| NlaIII | CATG | 3 cut(s) | 139, 427, 718 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| NmuCI | GTSAC | 1 cut(s) | 586 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PagI | TCATGA | 1 cut(s) | 714 |
| PciI | ACATGT | 1 cut(s) | 135 |
| PctI | GAATGC | 1 cut(s) | 251 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PkrI | GCNGC | 3 cut(s) | 422, 481, 642 |
| PscI | ACATGT | 1 cut(s) | 135 |
| PshBI | ATTAAT | 1 cut(s) | 267 |
| Psp124BI | GAGCTC | 1 cut(s) | 331 |
| Psp6I | CCWGG | 1 cut(s) | 408 |
| PspGI | CCWGG | 1 cut(s) | 408 |
| PspPI | GGNCC | 1 cut(s) | 693 |
| RsaI | GTAC | 1 cut(s) | 381 |
| RsaNI | GTAC | 1 cut(s) | 380 |
| RseI | CAYNNNNRTG | 2 cut(s) | 428, 713 |
| SacI | GAGCTC | 1 cut(s) | 331 |
| SaqAI | TTAA | 5 cut(s) | 140, 267, 509, 525, 659 |
| SatI | GCNGC | 3 cut(s) | 421, 480, 641 |
| Sau3AI | GATC | 4 cut(s) | 234, 469, 499, 717 |
| Sau96I | GGNCC | 1 cut(s) | 693 |
| ScrFI | CCNGG | 1 cut(s) | 410 |
| SduI | GDGCHC | 1 cut(s) | 331 |
| SetI | ASST | 7 cut(s) | 20, 28, 59, 331, 390, 444, 454 |
| SinI | GGWCC | 1 cut(s) | 693 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 428, 713 |
| Sse9I | AATT | 6 cut(s) | 48, 85, 510, 599, 626, 656 |
| SsiI | CCGC | 5 cut(s) | 173, 421, 479, 482, 641 |
| SspMI | CTAG | 1 cut(s) | 396 |
| SstI | GAGCTC | 1 cut(s) | 331 |
| StyD4I | CCNGG | 1 cut(s) | 408 |
| StyI | CCWWGG | 1 cut(s) | 696 |
| TaqI | TCGA | 2 cut(s) | 192, 733 |
| TasI | AATT | 6 cut(s) | 48, 85, 510, 599, 626, 656 |
| TatI | WGTACW | 1 cut(s) | 379 |
| TauI | GCSGC | 3 cut(s) | 423, 482, 643 |
| Tru1I | TTAA | 5 cut(s) | 140, 267, 509, 525, 659 |
| Tru9I | TTAA | 5 cut(s) | 140, 267, 509, 525, 659 |
| TscAI | CASTG | 1 cut(s) | 170 |
| TseFI | GTSAC | 1 cut(s) | 586 |
| Tsp45I | GTSAC | 1 cut(s) | 586 |
| TspDTI | ATGAA | 3 cut(s) | 100, 446, 703 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| TspRI | CASTG | 1 cut(s) | 170 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| VpaK11BI | GGWCC | 1 cut(s) | 693 |
| VspI | ATTAAT | 1 cut(s) | 267 |
| XapI | RAATTY | 2 cut(s) | 48, 626 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 598 |
| XspI | CTAG | 1 cut(s) | 396 |