ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 16 - 158 | 2.1e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 272 |
| AccI | GTMKAC | 1 cut(s) | 232 |
| AclI | AACGTT | 1 cut(s) | 522 |
| AclWI | GGATC | 3 cut(s) | 98, 128, 435 |
| AcoI | YGGCCR | 1 cut(s) | 581 |
| AcsI | RAATTY | 3 cut(s) | 164, 362, 394 |
| AcuI | CTGAAG | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 423, 590 |
| AgsI | TTSAA | 2 cut(s) | 129, 602 |
| AjnI | CCWGG | 1 cut(s) | 261 |
| AluBI | AGCT | 6 cut(s) | 77, 205, 241, 276, 308, 596 |
| AluI | AGCT | 6 cut(s) | 77, 205, 241, 276, 308, 596 |
| AlwI | GGATC | 3 cut(s) | 98, 128, 435 |
| Ama87I | CYCGRG | 1 cut(s) | 447 |
| AoxI | GGCC | 2 cut(s) | 265, 581 |
| ApeKI | GCWGC | 2 cut(s) | 273, 335 |
| ApoI | RAATTY | 3 cut(s) | 164, 362, 394 |
| AspLEI | GCGC | 2 cut(s) | 273, 454 |
| AspS9I | GGNCC | 2 cut(s) | 100, 265 |
| AvaI | CYCGRG | 1 cut(s) | 447 |
| AvaII | GGWCC | 1 cut(s) | 100 |
| BalI | TGGCCA | 1 cut(s) | 583 |
| BbvCI | CCTCAGC | 1 cut(s) | 435 |
| BbvI | GCAGC | 2 cut(s) | 285, 347 |
| BccI | CCATC | 2 cut(s) | 56, 428 |
| BceAI | ACGGC | 3 cut(s) | 300, 421, 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 324, 358 |
| BciT130I | CCWGG | 1 cut(s) | 263 |
| BciVI | GTATCC | 2 cut(s) | 146, 287 |
| BfaI | CTAG | 1 cut(s) | 299 |
| BfuI | GTATCC | 2 cut(s) | 146, 287 |
| BisI | GCNGC | 2 cut(s) | 274, 336 |
| BlsI | GCNGC | 2 cut(s) | 275, 337 |
| Bme1390I | CCNGG | 1 cut(s) | 263 |
| Bme18I | GGWCC | 1 cut(s) | 100 |
| BmeT110I | CYCGRG | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 265 |
| BmiI | GGNNCC | 1 cut(s) | 101 |
| BmrFI | CCNGG | 1 cut(s) | 263 |
| Bpu10I | CCTNAGC | 1 cut(s) | 435 |
| BpuEI | CTTGAG | 2 cut(s) | 36, 227 |
| BsaJI | CCNNGG | 2 cut(s) | 262, 328 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 423, 590 |
| BseBI | CCWGG | 1 cut(s) | 263 |
| BseDI | CCNNGG | 2 cut(s) | 262, 328 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 423, 590 |
| BseMII | CTCAG | 1 cut(s) | 449 |
| BseRI | GAGGAG | 1 cut(s) | 485 |
| BseXI | GCAGC | 2 cut(s) | 285, 347 |
| BseYI | CCCAGC | 1 cut(s) | 73 |
| BshFI | GGCC | 2 cut(s) | 267, 583 |
| BsiHKCI | CYCGRG | 1 cut(s) | 447 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 423, 590 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 2 cut(s) | 267, 583 |
| BsoBI | CYCGRG | 1 cut(s) | 447 |
| Bsp143I | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| BspANI | GGCC | 2 cut(s) | 267, 583 |
| BspCNI | CTCAG | 1 cut(s) | 448 |
| BspLI | GGNNCC | 1 cut(s) | 101 |
| BspPI | GGATC | 3 cut(s) | 98, 128, 435 |
| BssECI | CCNNGG | 2 cut(s) | 262, 328 |
| BssMI | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| Bst2UI | CCWGG | 1 cut(s) | 263 |
| Bst6I | CTCTTC | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 1 cut(s) | 269 |
| BstDEI | CTNAG | 2 cut(s) | 435, 589 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 421 |
| BstHHI | GCGC | 2 cut(s) | 273, 454 |
| BstKTI | GATC | 5 cut(s) | 93, 123, 430, 493, 564 |
| BstMBI | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 273 |
| BstNI | CCWGG | 1 cut(s) | 263 |
| BstSCI | CCNGG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 2 cut(s) | 285, 347 |
| BsuI | GTATCC | 2 cut(s) | 146, 287 |
| BsuRI | GGCC | 2 cut(s) | 267, 583 |
| BtsI | GCAGTG | 1 cut(s) | 35 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 1 cut(s) | 269 |
| CfoI | GCGC | 2 cut(s) | 273, 454 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 265 |
| CseI | GACGC | 1 cut(s) | 364 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 27, 62 |
| CviAII | CATG | 1 cut(s) | 280 |
| DdeI | CTNAG | 2 cut(s) | 435, 589 |
| DpnI | GATC | 5 cut(s) | 92, 122, 429, 492, 563 |
| DpnII | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| EaeI | YGGCCR | 1 cut(s) | 581 |
| Eam1104I | CTCTTC | 1 cut(s) | 16 |
| EarI | CTCTTC | 1 cut(s) | 16 |
| Eco47I | GGWCC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 1 cut(s) | 221 |
| Eco88I | CYCGRG | 1 cut(s) | 447 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 421 |
| EcoRI | GAATTC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 261 |
| FaeI | CATG | 1 cut(s) | 283 |
| FaiI | YATR | 8 cut(s) | 81, 281, 400, 402, 478, 480, 519, 542 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 1 cut(s) | 279 |
| FauNDI | CATATG | 1 cut(s) | 400 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 2 cut(s) | 274, 336 |
| Fsp4HI | GCNGC | 2 cut(s) | 274, 336 |
| FspBI | CTAG | 1 cut(s) | 299 |
| FspI | TGCGCA | 1 cut(s) | 272 |
| GlaI | GCGC | 2 cut(s) | 272, 453 |
| GluI | GCNGC | 2 cut(s) | 274, 336 |
| GsaI | CCCAGC | 1 cut(s) | 77 |
| HaeIII | GGCC | 2 cut(s) | 267, 583 |
| HgaI | GACGC | 1 cut(s) | 364 |
| HhaI | GCGC | 2 cut(s) | 273, 454 |
| Hin1II | CATG | 1 cut(s) | 283 |
| Hin6I | GCGC | 2 cut(s) | 271, 452 |
| HinP1I | GCGC | 2 cut(s) | 271, 452 |
| HinfI | GANTC | 3 cut(s) | 49, 247, 356 |
| Hpy166II | GTNNAC | 3 cut(s) | 35, 176, 233 |
| Hpy188I | TCNGA | 4 cut(s) | 114, 152, 332, 361 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 53, 94, 244, 488 |
| Hpy8I | GTNNAC | 3 cut(s) | 35, 176, 233 |
| Hpy99I | CGWCG | 1 cut(s) | 323 |
| HpyAV | CCTTC | 2 cut(s) | 11, 283 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyCH4V | TGCA | 2 cut(s) | 460, 533 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 273 |
| HpyF3I | CTNAG | 2 cut(s) | 435, 589 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92II | CATG | 1 cut(s) | 283 |
| HspAI | GCGC | 2 cut(s) | 271, 452 |
| Kzo9I | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| LmnI | GCTCC | 2 cut(s) | 332, 593 |
| LpnPI | CCDG | 8 cut(s) | 87, 248, 275, 281, 324, 360, 409, 501 |
| Lsp1109I | GCAGC | 2 cut(s) | 285, 347 |
| MaeI | CTAG | 1 cut(s) | 299 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MaeIII | GTNAC | 2 cut(s) | 189, 442 |
| MalI | GATC | 5 cut(s) | 92, 122, 429, 492, 563 |
| MboI | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| MboII | GAAGA | 3 cut(s) | 33, 614, 633 |
| MfeI | CAATTG | 2 cut(s) | 85, 455 |
| MlsI | TGGCCA | 1 cut(s) | 583 |
| MluCI | AATT | 8 cut(s) | 41, 85, 124, 164, 362, 394, 455, 628 |
| MluNI | TGGCCA | 1 cut(s) | 583 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 6 cut(s) | 90, 338, 427, 444, 495, 506 |
| Mox20I | TGGCCA | 1 cut(s) | 583 |
| MscI | TGGCCA | 1 cut(s) | 583 |
| MseI | TTAA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 583 |
| MspR9I | CCNGG | 1 cut(s) | 263 |
| MunI | CAATTG | 2 cut(s) | 85, 455 |
| MvaI | CCWGG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 273 |
| NdeI | CATATG | 1 cut(s) | 400 |
| NdeII | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| NlaIII | CATG | 1 cut(s) | 283 |
| NlaIV | GGNNCC | 1 cut(s) | 101 |
| NsbI | TGCGCA | 1 cut(s) | 272 |
| PaeR7I | CTCGAG | 1 cut(s) | 447 |
| PfeI | GAWTC | 2 cut(s) | 247, 356 |
| PkrI | GCNGC | 2 cut(s) | 275, 337 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp1406I | AACGTT | 1 cut(s) | 522 |
| Psp6I | CCWGG | 1 cut(s) | 261 |
| PspFI | CCCAGC | 1 cut(s) | 73 |
| PspGI | CCWGG | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 1 cut(s) | 101 |
| PspPI | GGNCC | 2 cut(s) | 100, 265 |
| PspXI | VCTCGAGB | 1 cut(s) | 447 |
| SaqAI | TTAA | 1 cut(s) | 5 |
| SatI | GCNGC | 2 cut(s) | 274, 336 |
| Sau3AI | GATC | 5 cut(s) | 90, 120, 427, 490, 561 |
| Sau96I | GGNCC | 2 cut(s) | 100, 265 |
| SchI | GAGTC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 263 |
| Sfr274I | CTCGAG | 1 cut(s) | 447 |
| SinI | GGWCC | 1 cut(s) | 100 |
| SlaI | CTCGAG | 1 cut(s) | 447 |
| SmlI | CTYRAG | 3 cut(s) | 51, 242, 447 |
| SmoI | CTYRAG | 3 cut(s) | 51, 242, 447 |
| Sse9I | AATT | 8 cut(s) | 41, 85, 124, 164, 362, 394, 455, 628 |
| SspMI | CTAG | 1 cut(s) | 299 |
| StyD4I | CCNGG | 1 cut(s) | 261 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 2 cut(s) | 321, 448 |
| TasI | AATT | 8 cut(s) | 41, 85, 124, 164, 362, 394, 455, 628 |
| TfiI | GAWTC | 2 cut(s) | 247, 356 |
| Tru1I | TTAA | 1 cut(s) | 5 |
| Tru9I | TTAA | 1 cut(s) | 5 |
| TscAI | CASTG | 1 cut(s) | 35 |
| TseI | GCWGC | 2 cut(s) | 273, 335 |
| TspDTI | ATGAA | 1 cut(s) | 387 |
| TspRI | CASTG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 1 cut(s) | 100 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 421 |
| XapI | RAATTY | 3 cut(s) | 164, 362, 394 |
| XhoI | CTCGAG | 1 cut(s) | 447 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XspI | CTAG | 1 cut(s) | 299 |