gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 638, 845 |
| Acc36I | ACCTGC | 1 cut(s) | 60 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 476 |
| AccI | GTMKAC | 3 cut(s) | 543, 1709, 2164 |
| AciI | CCGC | 2 cut(s) | 685, 909 |
| AclWI | GGATC | 2 cut(s) | 460, 1495 |
| AcuI | CTGAAG | 1 cut(s) | 1325 |
| AfaI | GTAC | 8 cut(s) | 175, 943, 975, 1046, 1059, 1134, 1570, 2218 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 476 |
| AflII | CTTAAG | 1 cut(s) | 2006 |
| AflIII | ACRYGT | 1 cut(s) | 1166 |
| AhlI | ACTAGT | 1 cut(s) | 416 |
| AluBI | AGCT | 2 cut(s) | 1607, 1960 |
| AluI | AGCT | 2 cut(s) | 1607, 1960 |
| Alw26I | GTCTC | 1 cut(s) | 1231 |
| AlwI | GGATC | 2 cut(s) | 460, 1495 |
| AoxI | GGCC | 1 cut(s) | 59 |
| ApeKI | GCWGC | 1 cut(s) | 1730 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 464, 496 |
| AseI | ATTAAT | 3 cut(s) | 131, 666, 1860 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 218 |
| AspA2I | CCTAGG | 1 cut(s) | 53 |
| AspS9I | GGNCC | 4 cut(s) | 60, 480, 1285, 1889 |
| AsuHPI | GGTGA | 7 cut(s) | 14, 101, 312, 670, 1523, 1589, 2038 |
| AvaII | GGWCC | 3 cut(s) | 480, 1285, 1889 |
| AvrII | CCTAGG | 1 cut(s) | 53 |
| BaeGI | GKGCMC | 1 cut(s) | 1110 |
| BbvI | GCAGC | 1 cut(s) | 1717 |
| BccI | CCATC | 5 cut(s) | 331, 555, 1097, 1328, 1900 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1389, 1423 |
| BciVI | GTATCC | 1 cut(s) | 2078 |
| BclI | TGATCA | 2 cut(s) | 144, 237 |
| BcoDI | GTCTC | 1 cut(s) | 1231 |
| BcuI | ACTAGT | 1 cut(s) | 416 |
| BfrI | CTTAAG | 1 cut(s) | 2006 |
| BfuAI | ACCTGC | 1 cut(s) | 60 |
| BfuI | GTATCC | 1 cut(s) | 2078 |
| BglII | AGATCT | 2 cut(s) | 770, 1423 |
| BisI | GCNGC | 1 cut(s) | 1731 |
| BlnI | CCTAGG | 1 cut(s) | 53 |
| BlsI | GCNGC | 1 cut(s) | 1732 |
| Bme18I | GGWCC | 3 cut(s) | 480, 1285, 1889 |
| BmgT120I | GGNCC | 4 cut(s) | 60, 480, 1285, 1889 |
| BmiI | GGNNCC | 2 cut(s) | 62, 481 |
| BmsI | GCATC | 5 cut(s) | 167, 378, 385, 672, 1621 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1347 |
| Bpu10I | CCTNAGC | 1 cut(s) | 65 |
| BsaAI | YACGTR | 1 cut(s) | 2315 |
| BsaBI | GATNNNNATC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 1 cut(s) | 53 |
| BsaWI | WCCGGW | 1 cut(s) | 1916 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 476 |
| Bse1I | ACTGG | 2 cut(s) | 10, 489 |
| Bse3DI | GCAATG | 1 cut(s) | 364 |
| Bse8I | GATNNNNATC | 1 cut(s) | 322 |
| BseDI | CCNNGG | 1 cut(s) | 53 |
| BseJI | GATNNNNATC | 1 cut(s) | 322 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 476 |
| BseMI | GCAATG | 1 cut(s) | 364 |
| BseMII | CTCAG | 2 cut(s) | 1581, 2227 |
| BseNI | ACTGG | 2 cut(s) | 10, 489 |
| BseRI | GAGGAG | 1 cut(s) | 2088 |
| BseSI | GKGCMC | 1 cut(s) | 1110 |
| BseXI | GCAGC | 1 cut(s) | 1717 |
| BseYI | CCCAGC | 1 cut(s) | 25 |
| BsgI | GTGCAG | 1 cut(s) | 1383 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BsiSI | CCGG | 1 cut(s) | 1917 |
| BslFI | GGGAC | 3 cut(s) | 471, 1335, 2035 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 476 |
| BsmAI | GTCTC | 1 cut(s) | 1231 |
| BsmFI | GGGAC | 3 cut(s) | 471, 1335, 2035 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1110 |
| Bsp1407I | TGTACA | 1 cut(s) | 941 |
| BspACI | CCGC | 2 cut(s) | 685, 909 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 2 cut(s) | 1582, 2226 |
| BspLI | GGNNCC | 2 cut(s) | 62, 481 |
| BspMI | ACCTGC | 1 cut(s) | 60 |
| BspPI | GGATC | 2 cut(s) | 460, 1495 |
| BspTI | CTTAAG | 1 cut(s) | 2006 |
| BsrDI | GCAATG | 1 cut(s) | 364 |
| BsrGI | TGTACA | 1 cut(s) | 941 |
| BsrI | ACTGG | 2 cut(s) | 10, 489 |
| BssECI | CCNNGG | 1 cut(s) | 53 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 7 cut(s) | 178, 219, 362, 703, 1264, 1441, 2128 |
| Bst6I | CTCTTC | 1 cut(s) | 2389 |
| BstAFI | CTTAAG | 1 cut(s) | 2006 |
| BstAUI | TGTACA | 1 cut(s) | 941 |
| BstBAI | YACGTR | 1 cut(s) | 2315 |
| BstDEI | CTNAG | 5 cut(s) | 65, 1488, 1590, 1880, 2213 |
| BstMAI | GTCTC | 1 cut(s) | 1231 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 35, 1730 |
| BstNSI | RCATGY | 2 cut(s) | 1170, 2332 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1347 |
| BstSLI | GKGCMC | 1 cut(s) | 1110 |
| BstSNI | TACGTA | 1 cut(s) | 2315 |
| BstV1I | GCAGC | 1 cut(s) | 1717 |
| BstX2I | RGATCY | 3 cut(s) | 465, 770, 1423 |
| BstYI | RGATCY | 3 cut(s) | 465, 770, 1423 |
| BsuI | GTATCC | 1 cut(s) | 2078 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 2 cut(s) | 209, 699 |
| BveI | ACCTGC | 1 cut(s) | 60 |
| Cfr13I | GGNCC | 4 cut(s) | 60, 480, 1285, 1889 |
| CseI | GACGC | 1 cut(s) | 1809 |
| Csp6I | GTAC | 8 cut(s) | 174, 942, 974, 1045, 1058, 1133, 1569, 2217 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 38, 73, 2101, 2136 |
| CviJI | RGCY | 7 cut(s) | 29, 61, 397, 650, 1327, 1607, 1960 |
| CviKI_1 | RGCY | 7 cut(s) | 29, 61, 397, 650, 1327, 1607, 1960 |
| CviQI | GTAC | 8 cut(s) | 174, 942, 974, 1045, 1058, 1133, 1569, 2217 |
| DdeI | CTNAG | 5 cut(s) | 65, 1488, 1590, 1880, 2213 |
| DraI | TTTAAA | 3 cut(s) | 1093, 1315, 1743 |
| Eam1104I | CTCTTC | 1 cut(s) | 2389 |
| EarI | CTCTTC | 1 cut(s) | 2389 |
| EciI | GGCGGA | 1 cut(s) | 898 |
| Eco105I | TACGTA | 1 cut(s) | 2315 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco32I | GATATC | 1 cut(s) | 866 |
| Eco47I | GGWCC | 3 cut(s) | 480, 1285, 1889 |
| Eco57I | CTGAAG | 1 cut(s) | 1325 |
| EcoRI | GAATTC | 2 cut(s) | 293, 1875 |
| EcoRV | GATATC | 1 cut(s) | 866 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| EcoT22I | ATGCAT | 2 cut(s) | 1980, 2330 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| FaqI | GGGAC | 3 cut(s) | 471, 1335, 2035 |
| FauNDI | CATATG | 1 cut(s) | 527 |
| FbaI | TGATCA | 2 cut(s) | 144, 237 |
| FblI | GTMKAC | 3 cut(s) | 543, 1709, 2164 |
| Fnu4HI | GCNGC | 1 cut(s) | 1731 |
| Fsp4HI | GCNGC | 1 cut(s) | 1731 |
| GluI | GCNGC | 1 cut(s) | 1731 |
| GsaI | CCCAGC | 1 cut(s) | 29 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HapII | CCGG | 1 cut(s) | 1917 |
| HgaI | GACGC | 1 cut(s) | 1809 |
| HincII | GTYRAC | 1 cut(s) | 544 |
| HindII | GTYRAC | 1 cut(s) | 544 |
| HpaII | CCGG | 1 cut(s) | 1917 |
| HphI | GGTGA | 7 cut(s) | 14, 101, 312, 670, 1523, 1589, 2038 |
| Hpy166II | GTNNAC | 7 cut(s) | 544, 811, 944, 1213, 1580, 1710, 2165 |
| Hpy188I | TCNGA | 8 cut(s) | 1069, 1269, 1305, 1497, 1558, 1591, 1971, 2247 |
| Hpy188III | TCNNGA | 6 cut(s) | 162, 1628, 1776, 1896, 2185, 2261 |
| Hpy8I | GTNNAC | 7 cut(s) | 544, 811, 944, 1213, 1580, 1710, 2165 |
| HpyAV | CCTTC | 2 cut(s) | 1425, 1939 |
| HpyCH4III | ACNGT | 7 cut(s) | 178, 219, 362, 703, 1264, 1441, 2128 |
| HpyCH4IV | ACGT | 1 cut(s) | 2314 |
| HpyCH4V | TGCA | 8 cut(s) | 281, 343, 369, 1400, 1815, 1836, 1978, 2328 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 35, 1730 |
| HpyF3I | CTNAG | 5 cut(s) | 65, 1488, 1590, 1880, 2213 |
| HpySE526I | ACGT | 1 cut(s) | 2314 |
| Ksp22I | TGATCA | 2 cut(s) | 144, 237 |
| Lsp1109I | GCAGC | 1 cut(s) | 1717 |
| LweI | GCATC | 5 cut(s) | 167, 378, 385, 672, 1621 |
| MaeII | ACGT | 1 cut(s) | 2314 |
| MaeIII | GTNAC | 6 cut(s) | 12, 448, 825, 1076, 1258, 1367 |
| MboII | GAAGA | 7 cut(s) | 1226, 1286, 1509, 1917, 2167, 2190, 2376 |
| MflI | RGATCY | 3 cut(s) | 465, 770, 1423 |
| MhlI | GDGCHC | 1 cut(s) | 1110 |
| MlyI | GAGTC | 3 cut(s) | 101, 1364, 1405 |
| MmeI | TCCRAC | 3 cut(s) | 583, 659, 2338 |
| MnlI | CCTC | 9 cut(s) | 448, 599, 640, 1443, 1778, 1790, 2012, 2066, 2069 |
| Mph1103I | ATGCAT | 2 cut(s) | 1980, 2330 |
| MroXI | GAANNNNTTC | 1 cut(s) | 218 |
| MslI | CAYNNNNRTG | 3 cut(s) | 43, 789, 1725 |
| MspCI | CTTAAG | 1 cut(s) | 2006 |
| MspI | CCGG | 1 cut(s) | 1917 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 35, 1730 |
| NdeI | CATATG | 1 cut(s) | 527 |
| NlaIV | GGNNCC | 2 cut(s) | 62, 481 |
| NmuCI | GTSAC | 4 cut(s) | 12, 448, 1258, 1367 |
| NsiI | ATGCAT | 2 cut(s) | 1980, 2330 |
| NspI | RCATGY | 2 cut(s) | 1170, 2332 |
| PciI | ACATGT | 1 cut(s) | 1166 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2173 |
| PdmI | GAANNNNTTC | 1 cut(s) | 218 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 476 |
| PkrI | GCNGC | 1 cut(s) | 1732 |
| PleI | GAGTC | 3 cut(s) | 100, 1364, 1405 |
| PpsI | GAGTC | 3 cut(s) | 100, 1364, 1405 |
| Ppu21I | YACGTR | 1 cut(s) | 2315 |
| PscI | ACATGT | 1 cut(s) | 1166 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1347 |
| PshBI | ATTAAT | 3 cut(s) | 131, 666, 1860 |
| PsiI | TTATAA | 2 cut(s) | 638, 845 |
| PspFI | CCCAGC | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 2 cut(s) | 62, 481 |
| PspPI | GGNCC | 4 cut(s) | 60, 480, 1285, 1889 |
| PsuI | RGATCY | 3 cut(s) | 465, 770, 1423 |
| RsaI | GTAC | 8 cut(s) | 175, 943, 975, 1046, 1059, 1134, 1570, 2218 |
| RsaNI | GTAC | 8 cut(s) | 174, 942, 974, 1045, 1058, 1133, 1569, 2217 |
| RseI | CAYNNNNRTG | 3 cut(s) | 43, 789, 1725 |
| SalI | GTCGAC | 1 cut(s) | 542 |
| SatI | GCNGC | 1 cut(s) | 1731 |
| Sau96I | GGNCC | 4 cut(s) | 60, 480, 1285, 1889 |
| SchI | GAGTC | 3 cut(s) | 101, 1364, 1405 |
| SduI | GDGCHC | 1 cut(s) | 1110 |
| SfaNI | GCATC | 5 cut(s) | 167, 378, 385, 672, 1621 |
| SinI | GGWCC | 3 cut(s) | 480, 1285, 1889 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 43, 789, 1725 |
| SmlI | CTYRAG | 1 cut(s) | 2006 |
| SmoI | CTYRAG | 1 cut(s) | 2006 |
| SnaBI | TACGTA | 1 cut(s) | 2315 |
| SpeI | ACTAGT | 1 cut(s) | 416 |
| SsiI | CCGC | 2 cut(s) | 685, 909 |
| SspI | AATATT | 2 cut(s) | 331, 634 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 7 cut(s) | 178, 219, 362, 703, 1264, 1441, 2128 |
| TaiI | ACGT | 1 cut(s) | 2317 |
| TaqI | TCGA | 7 cut(s) | 543, 1247, 1409, 1520, 1783, 1795, 1897 |
| TatI | WGTACW | 2 cut(s) | 941, 2216 |
| TscAI | CASTG | 2 cut(s) | 216, 706 |
| TseFI | GTSAC | 4 cut(s) | 12, 448, 1258, 1367 |
| TseI | GCWGC | 1 cut(s) | 1730 |
| Tsp45I | GTSAC | 4 cut(s) | 12, 448, 1258, 1367 |
| TspGWI | ACGGA | 2 cut(s) | 467, 540 |
| TspRI | CASTG | 2 cut(s) | 216, 706 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 476 |
| Vha464I | CTTAAG | 1 cut(s) | 2006 |
| VpaK11BI | GGWCC | 3 cut(s) | 480, 1285, 1889 |
| VspI | ATTAAT | 3 cut(s) | 131, 666, 1860 |
| XbaI | TCTAGA | 1 cut(s) | 161 |
| XceI | RCATGY | 2 cut(s) | 1170, 2332 |
| XmaJI | CCTAGG | 1 cut(s) | 53 |
| XmiI | GTMKAC | 3 cut(s) | 543, 1709, 2164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 218 |
| Zsp2I | ATGCAT | 2 cut(s) | 1980, 2330 |