gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 334 |
| AccB1I | GGYRCC | 1 cut(s) | 194 |
| AccI | GTMKAC | 2 cut(s) | 406, 439 |
| AciI | CCGC | 2 cut(s) | 368, 400 |
| AcoI | YGGCCR | 1 cut(s) | 369 |
| AcuI | CTGAAG | 1 cut(s) | 624 |
| AfaI | GTAC | 2 cut(s) | 66, 262 |
| AgsI | TTSAA | 6 cut(s) | 80, 115, 216, 250, 413, 463 |
| AluBI | AGCT | 4 cut(s) | 332, 397, 610, 643 |
| AluI | AGCT | 4 cut(s) | 332, 397, 610, 643 |
| Alw21I | GWGCWC | 1 cut(s) | 645 |
| Alw26I | GTCTC | 2 cut(s) | 99, 545 |
| AoxI | GGCC | 1 cut(s) | 369 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 609 |
| AsuHPI | GGTGA | 1 cut(s) | 358 |
| BaeGI | GKGCMC | 1 cut(s) | 323 |
| BanI | GGYRCC | 1 cut(s) | 194 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BauI | CACGAG | 1 cut(s) | 518 |
| Bbv12I | GWGCWC | 1 cut(s) | 645 |
| BbvI | GCAGC | 1 cut(s) | 271 |
| BccI | CCATC | 2 cut(s) | 164, 681 |
| BceAI | ACGGC | 1 cut(s) | 387 |
| BcoDI | GTCTC | 2 cut(s) | 99, 545 |
| BfaI | CTAG | 1 cut(s) | 492 |
| BglII | AGATCT | 2 cut(s) | 140, 468 |
| BisI | GCNGC | 2 cut(s) | 285, 369 |
| BlsI | GCNGC | 2 cut(s) | 286, 370 |
| BmiI | GGNNCC | 1 cut(s) | 196 |
| BmsI | GCATC | 3 cut(s) | 286, 466, 547 |
| BpmI | CTGGAG | 1 cut(s) | 404 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 418, 678 |
| BsaI | GGTCTC | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 1 cut(s) | 535 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 535 |
| BseGI | GGATG | 1 cut(s) | 156 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 2 cut(s) | 81, 347 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BseRI | GAGGAG | 1 cut(s) | 647 |
| BseSI | GKGCMC | 1 cut(s) | 323 |
| BseXI | GCAGC | 1 cut(s) | 271 |
| BshFI | GGCC | 1 cut(s) | 371 |
| BshNI | GGYRCC | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 645 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BsmAI | GTCTC | 2 cut(s) | 99, 545 |
| BsnI | GGCC | 1 cut(s) | 371 |
| Bso31I | GGTCTC | 1 cut(s) | 545 |
| Bsp1286I | GDGCHC | 2 cut(s) | 323, 645 |
| Bsp143I | GATC | 3 cut(s) | 140, 256, 468 |
| Bsp19I | CCATGG | 1 cut(s) | 535 |
| BspACI | CCGC | 2 cut(s) | 368, 400 |
| BspANI | GGCC | 1 cut(s) | 371 |
| BspCNI | CTCAG | 2 cut(s) | 82, 346 |
| BspLI | GGNNCC | 1 cut(s) | 196 |
| BspQI | GCTCTTC | 1 cut(s) | 600 |
| BspT107I | GGYRCC | 1 cut(s) | 194 |
| BspTNI | GGTCTC | 1 cut(s) | 545 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssECI | CCNNGG | 1 cut(s) | 535 |
| BssMI | GATC | 3 cut(s) | 140, 256, 468 |
| BssNAI | GTATAC | 1 cut(s) | 440 |
| BssSI | CACGAG | 1 cut(s) | 518 |
| BssT1I | CCWWGG | 1 cut(s) | 535 |
| Bst1107I | GTATAC | 1 cut(s) | 440 |
| Bst2BI | CACGAG | 1 cut(s) | 518 |
| Bst4CI | ACNGT | 1 cut(s) | 64 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 600 |
| BstDEI | CTNAG | 3 cut(s) | 90, 333, 626 |
| BstDSI | CCRYGG | 1 cut(s) | 535 |
| BstEII | GGTNACC | 1 cut(s) | 346 |
| BstF5I | GGATG | 1 cut(s) | 156 |
| BstKTI | GATC | 3 cut(s) | 143, 259, 471 |
| BstMAI | GTCTC | 2 cut(s) | 99, 545 |
| BstMBI | GATC | 3 cut(s) | 140, 256, 468 |
| BstPI | GGTNACC | 1 cut(s) | 346 |
| BstSLI | GKGCMC | 1 cut(s) | 323 |
| BstV1I | GCAGC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 2 cut(s) | 140, 468 |
| BstYI | RGATCY | 2 cut(s) | 140, 468 |
| BstZ17I | GTATAC | 1 cut(s) | 440 |
| BsuRI | GGCC | 1 cut(s) | 371 |
| BtgI | CCRYGG | 1 cut(s) | 535 |
| BtsCI | GGATG | 1 cut(s) | 156 |
| CseI | GACGC | 2 cut(s) | 518, 568 |
| Csp6I | GTAC | 2 cut(s) | 65, 261 |
| CviAII | CATG | 5 cut(s) | 52, 386, 488, 536, 614 |
| CviJI | RGCY | 9 cut(s) | 25, 332, 371, 397, 524, 610, 618, 643, 698 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 332, 371, 397, 524, 610, 618, 643, 698 |
| CviQI | GTAC | 2 cut(s) | 65, 261 |
| DdeI | CTNAG | 3 cut(s) | 90, 333, 626 |
| DpnI | GATC | 3 cut(s) | 142, 258, 470 |
| DpnII | GATC | 3 cut(s) | 140, 256, 468 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 334 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 334 |
| EaeI | YGGCCR | 1 cut(s) | 369 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 600 |
| EarI | CTCTTC | 2 cut(s) | 150, 600 |
| EciI | GGCGGA | 1 cut(s) | 389 |
| Ecl136II | GAGCTC | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco31I | GGTCTC | 1 cut(s) | 545 |
| Eco53kI | GAGCTC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 1 cut(s) | 624 |
| Eco91I | GGTNACC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 643 |
| EcoO65I | GGTNACC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 1 cut(s) | 535 |
| EcoT22I | ATGCAT | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 1 cut(s) | 535 |
| FaeI | CATG | 5 cut(s) | 55, 389, 491, 539, 617 |
| FatI | CATG | 5 cut(s) | 51, 385, 487, 535, 613 |
| FblI | GTMKAC | 2 cut(s) | 406, 439 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 369 |
| FokI | GGATG | 1 cut(s) | 143 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 369 |
| FspBI | CTAG | 1 cut(s) | 492 |
| GluI | GCNGC | 2 cut(s) | 285, 369 |
| GsuI | CTGGAG | 1 cut(s) | 404 |
| HaeIII | GGCC | 1 cut(s) | 371 |
| HapII | CCGG | 1 cut(s) | 230 |
| HgaI | GACGC | 2 cut(s) | 518, 568 |
| Hin1II | CATG | 5 cut(s) | 55, 389, 491, 539, 617 |
| HincII | GTYRAC | 2 cut(s) | 279, 407 |
| HindII | GTYRAC | 2 cut(s) | 279, 407 |
| HinfI | GANTC | 3 cut(s) | 16, 92, 659 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 1 cut(s) | 358 |
| Hpy166II | GTNNAC | 4 cut(s) | 279, 407, 440, 497 |
| Hpy188I | TCNGA | 3 cut(s) | 295, 475, 584 |
| Hpy188III | TCNNGA | 1 cut(s) | 421 |
| Hpy8I | GTNNAC | 4 cut(s) | 279, 407, 440, 497 |
| Hpy99I | CGWCG | 3 cut(s) | 363, 408, 512 |
| HpyAV | CCTTC | 2 cut(s) | 418, 656 |
| HpyCH4III | ACNGT | 1 cut(s) | 64 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 560, 566 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 333, 626 |
| Hsp92II | CATG | 5 cut(s) | 55, 389, 491, 539, 617 |
| Kzo9I | GATC | 3 cut(s) | 140, 256, 468 |
| LguI | GCTCTTC | 1 cut(s) | 600 |
| LmnI | GCTCC | 3 cut(s) | 386, 402, 648 |
| LpnPI | CCDG | 7 cut(s) | 84, 102, 243, 277, 434, 561, 615 |
| Lsp1109I | GCAGC | 1 cut(s) | 271 |
| LweI | GCATC | 3 cut(s) | 286, 466, 547 |
| MaeI | CTAG | 1 cut(s) | 492 |
| MaeIII | GTNAC | 2 cut(s) | 346, 428 |
| MalI | GATC | 3 cut(s) | 142, 258, 470 |
| MboI | GATC | 3 cut(s) | 140, 256, 468 |
| MboII | GAAGA | 4 cut(s) | 137, 296, 614, 617 |
| MfeI | CAATTG | 1 cut(s) | 458 |
| MflI | RGATCY | 2 cut(s) | 140, 468 |
| MhlI | GDGCHC | 2 cut(s) | 323, 645 |
| MluCI | AATT | 5 cut(s) | 110, 124, 458, 573, 594 |
| MlyI | GAGTC | 1 cut(s) | 101 |
| MmeI | TCCRAC | 1 cut(s) | 478 |
| MnlI | CCTC | 9 cut(s) | 54, 299, 461, 527, 580, 625, 628, 674, 702 |
| Mph1103I | ATGCAT | 1 cut(s) | 562 |
| MroXI | GAANNNNTTC | 1 cut(s) | 609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 492 |
| MspI | CCGG | 1 cut(s) | 230 |
| MunI | CAATTG | 1 cut(s) | 458 |
| NcoI | CCATGG | 1 cut(s) | 535 |
| NdeII | GATC | 3 cut(s) | 140, 256, 468 |
| NlaIII | CATG | 5 cut(s) | 55, 389, 491, 539, 617 |
| NlaIV | GGNNCC | 1 cut(s) | 196 |
| NmuCI | GTSAC | 1 cut(s) | 346 |
| NsiI | ATGCAT | 1 cut(s) | 562 |
| PciSI | GCTCTTC | 1 cut(s) | 600 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 265, 516 |
| PdmI | GAANNNNTTC | 1 cut(s) | 609 |
| PfeI | GAWTC | 2 cut(s) | 16, 659 |
| PkrI | GCNGC | 2 cut(s) | 286, 370 |
| PleI | GAGTC | 1 cut(s) | 100 |
| PpsI | GAGTC | 1 cut(s) | 100 |
| Psp124BI | GAGCTC | 1 cut(s) | 645 |
| PspEI | GGTNACC | 1 cut(s) | 346 |
| PspN4I | GGNNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 2 cut(s) | 140, 468 |
| RsaI | GTAC | 2 cut(s) | 66, 262 |
| RsaNI | GTAC | 2 cut(s) | 65, 261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 492 |
| SacI | GAGCTC | 1 cut(s) | 645 |
| SalI | GTCGAC | 1 cut(s) | 405 |
| SapI | GCTCTTC | 1 cut(s) | 600 |
| SatI | GCNGC | 2 cut(s) | 285, 369 |
| Sau3AI | GATC | 3 cut(s) | 140, 256, 468 |
| SchI | GAGTC | 1 cut(s) | 101 |
| SduI | GDGCHC | 2 cut(s) | 323, 645 |
| SfaNI | GCATC | 3 cut(s) | 286, 466, 547 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 492 |
| SmlI | CTYRAG | 3 cut(s) | 353, 433, 693 |
| SmoI | CTYRAG | 3 cut(s) | 353, 433, 693 |
| Sse9I | AATT | 5 cut(s) | 110, 124, 458, 573, 594 |
| SsiI | CCGC | 2 cut(s) | 368, 400 |
| SspMI | CTAG | 1 cut(s) | 492 |
| SstI | GAGCTC | 1 cut(s) | 645 |
| StyI | CCWWGG | 1 cut(s) | 535 |
| TaaI | ACNGT | 1 cut(s) | 64 |
| TaqI | TCGA | 2 cut(s) | 268, 406 |
| TasI | AATT | 5 cut(s) | 110, 124, 458, 573, 594 |
| TauI | GCSGC | 1 cut(s) | 371 |
| TfiI | GAWTC | 2 cut(s) | 16, 659 |
| TseFI | GTSAC | 1 cut(s) | 346 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 346 |
| TspDTI | ATGAA | 2 cut(s) | 68, 602 |
| XmiI | GTMKAC | 2 cut(s) | 406, 439 |
| XmnI | GAANNNNTTC | 1 cut(s) | 609 |
| XspI | CTAG | 1 cut(s) | 492 |
| Zsp2I | ATGCAT | 1 cut(s) | 562 |