transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 35 - 128 | 8.9e-11 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 190 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AluBI | AGCT | 3 cut(s) | 58, 94, 359 |
| AluI | AGCT | 3 cut(s) | 58, 94, 359 |
| Alw26I | GTCTC | 1 cut(s) | 355 |
| AlwI | GGATC | 1 cut(s) | 190 |
| Ama87I | CYCGRG | 2 cut(s) | 224, 354 |
| AoxI | GGCC | 1 cut(s) | 118 |
| AvaI | CYCGRG | 2 cut(s) | 224, 354 |
| AxyI | CCTNAGG | 1 cut(s) | 273 |
| BccI | CCATC | 3 cut(s) | 131, 163, 208 |
| BcoDI | GTCTC | 1 cut(s) | 355 |
| BmeT110I | CYCGRG | 2 cut(s) | 224, 354 |
| BmsI | GCATC | 2 cut(s) | 51, 254 |
| BpuEI | CTTGAG | 2 cut(s) | 22, 110 |
| BsaBI | GATNNNNATC | 1 cut(s) | 237 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 181, 211, 253, 283 |
| Bse21I | CCTNAGG | 1 cut(s) | 273 |
| Bse8I | GATNNNNATC | 1 cut(s) | 237 |
| BseGI | GGATG | 1 cut(s) | 142 |
| BseJI | GATNNNNATC | 1 cut(s) | 237 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BshFI | GGCC | 1 cut(s) | 120 |
| BsiHKCI | CYCGRG | 2 cut(s) | 224, 354 |
| BsmAI | GTCTC | 1 cut(s) | 355 |
| BsnI | GGCC | 1 cut(s) | 120 |
| BsoBI | CYCGRG | 2 cut(s) | 224, 354 |
| Bsp143I | GATC | 2 cut(s) | 182, 334 |
| BspANI | GGCC | 1 cut(s) | 120 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspPI | GGATC | 1 cut(s) | 190 |
| BssMI | GATC | 2 cut(s) | 182, 334 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 349 |
| Bst6I | CTCTTC | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstF5I | GGATG | 1 cut(s) | 142 |
| BstKTI | GATC | 2 cut(s) | 185, 337 |
| BstMAI | GTCTC | 1 cut(s) | 355 |
| BstMBI | GATC | 2 cut(s) | 182, 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 91 |
| BstX2I | RGATCY | 1 cut(s) | 182 |
| BstYI | RGATCY | 1 cut(s) | 182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 120 |
| BtsCI | GGATG | 1 cut(s) | 142 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CviAII | CATG | 2 cut(s) | 116, 287 |
| CviJI | RGCY | 8 cut(s) | 8, 58, 94, 120, 223, 278, 308, 359 |
| CviKI_1 | RGCY | 8 cut(s) | 8, 58, 94, 120, 223, 278, 308, 359 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 2 cut(s) | 184, 336 |
| DpnII | GATC | 2 cut(s) | 182, 334 |
| Eam1104I | CTCTTC | 1 cut(s) | 27 |
| EarI | CTCTTC | 1 cut(s) | 27 |
| Eco81I | CCTNAGG | 1 cut(s) | 273 |
| Eco88I | CYCGRG | 2 cut(s) | 224, 354 |
| FaeI | CATG | 2 cut(s) | 119, 290 |
| FaiI | YATR | 9 cut(s) | 80, 82, 117, 165, 170, 213, 288, 319, 342 |
| FatI | CATG | 2 cut(s) | 115, 286 |
| FauNDI | CATATG | 1 cut(s) | 80 |
| FokI | GGATG | 1 cut(s) | 149 |
| HaeIII | GGCC | 1 cut(s) | 120 |
| Hin1II | CATG | 2 cut(s) | 119, 290 |
| HinfI | GANTC | 2 cut(s) | 19, 238 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 205 |
| Hpy188III | TCNNGA | 2 cut(s) | 272, 354 |
| HpyAV | CCTTC | 1 cut(s) | 131 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 349 |
| HpyCH4V | TGCA | 1 cut(s) | 260 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 91 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| Hsp92II | CATG | 2 cut(s) | 119, 290 |
| Kzo9I | GATC | 2 cut(s) | 182, 334 |
| LpnPI | CCDG | 2 cut(s) | 227, 285 |
| LweI | GCATC | 2 cut(s) | 51, 254 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 2 cut(s) | 184, 336 |
| MboI | GATC | 2 cut(s) | 182, 334 |
| MboII | GAAGA | 2 cut(s) | 14, 227 |
| MflI | RGATCY | 1 cut(s) | 182 |
| MluCI | AATT | 1 cut(s) | 301 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MnlI | CCTC | 4 cut(s) | 199, 202, 268, 307 |
| MseI | TTAA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 91 |
| NdeI | CATATG | 1 cut(s) | 80 |
| NdeII | GATC | 2 cut(s) | 182, 334 |
| NlaIII | CATG | 2 cut(s) | 119, 290 |
| NmuCI | GTSAC | 1 cut(s) | 16 |
| PaeR7I | CTCGAG | 2 cut(s) | 224, 354 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| PspXI | VCTCGAGB | 1 cut(s) | 224 |
| PsuI | RGATCY | 1 cut(s) | 182 |
| PvuII | CAGCTG | 1 cut(s) | 94 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| Sau3AI | GATC | 2 cut(s) | 182, 334 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SetI | ASST | 6 cut(s) | 60, 96, 194, 298, 318, 361 |
| SfaNI | GCATC | 2 cut(s) | 51, 254 |
| Sfr274I | CTCGAG | 2 cut(s) | 224, 354 |
| SlaI | CTCGAG | 2 cut(s) | 224, 354 |
| SmlI | CTYRAG | 4 cut(s) | 37, 125, 224, 354 |
| SmoI | CTYRAG | 4 cut(s) | 37, 125, 224, 354 |
| Sse9I | AATT | 1 cut(s) | 301 |
| TaaI | ACNGT | 2 cut(s) | 145, 349 |
| TaqI | TCGA | 3 cut(s) | 60, 225, 355 |
| TaqII | GACCGA | 1 cut(s) | 40 |
| TasI | AATT | 1 cut(s) | 301 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TseFI | GTSAC | 1 cut(s) | 16 |
| Tsp45I | GTSAC | 1 cut(s) | 16 |
| TspDTI | ATGAA | 1 cut(s) | 228 |
| TspGWI | ACGGA | 1 cut(s) | 195 |
| XhoI | CTCGAG | 2 cut(s) | 224, 354 |