gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 12 - 85 | 3.9e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 525 |
| AclWI | GGATC | 2 cut(s) | 93, 749 |
| AcsI | RAATTY | 2 cut(s) | 591, 733 |
| AcuI | CTGAAG | 1 cut(s) | 978 |
| AfaI | GTAC | 1 cut(s) | 313 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 35, 747, 896 |
| AflIII | ACRYGT | 2 cut(s) | 677, 703 |
| AgsI | TTSAA | 9 cut(s) | 145, 168, 188, 257, 365, 407, 715, 765, 818 |
| AjnI | CCWGG | 1 cut(s) | 874 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 945, 977 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 628, 660 |
| AluBI | AGCT | 3 cut(s) | 91, 864, 1000 |
| AluI | AGCT | 3 cut(s) | 91, 864, 1000 |
| Alw26I | GTCTC | 4 cut(s) | 231, 318, 534, 552 |
| AlwI | GGATC | 2 cut(s) | 93, 749 |
| AoxI | GGCC | 3 cut(s) | 148, 430, 607 |
| ApeKI | GCWGC | 2 cut(s) | 239, 617 |
| ApoI | RAATTY | 2 cut(s) | 591, 733 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 556, 588 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 265 |
| AspS9I | GGNCC | 2 cut(s) | 572, 938 |
| AsuHPI | GGTGA | 1 cut(s) | 1003 |
| AvaII | GGWCC | 2 cut(s) | 572, 938 |
| BbvI | GCAGC | 2 cut(s) | 251, 604 |
| BccI | CCATC | 5 cut(s) | 302, 374, 583, 644, 667 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 11, 45 |
| BciT130I | CCWGG | 1 cut(s) | 876 |
| BcoDI | GTCTC | 4 cut(s) | 231, 318, 534, 552 |
| BfaI | CTAG | 4 cut(s) | 81, 375, 861, 891 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BisI | GCNGC | 2 cut(s) | 240, 618 |
| BlpI | GCTNAGC | 1 cut(s) | 1020 |
| BlsI | GCNGC | 2 cut(s) | 241, 619 |
| Bme1390I | CCNGG | 1 cut(s) | 876 |
| Bme18I | GGWCC | 2 cut(s) | 572, 938 |
| BmgT120I | GGNCC | 2 cut(s) | 572, 938 |
| BmrFI | CCNGG | 1 cut(s) | 876 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1001 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1020 |
| BpuEI | CTTGAG | 2 cut(s) | 680, 810 |
| BsaBI | GATNNNNATC | 1 cut(s) | 654 |
| BsaI | GGTCTC | 1 cut(s) | 231 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 825, 855 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 35, 747, 896 |
| Bse3DI | GCAATG | 2 cut(s) | 574, 1014 |
| Bse8I | GATNNNNATC | 1 cut(s) | 654 |
| BseBI | CCWGG | 1 cut(s) | 876 |
| BseGI | GGATG | 2 cut(s) | 655, 886 |
| BseJI | GATNNNNATC | 1 cut(s) | 654 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 35, 747, 896 |
| BseMI | GCAATG | 2 cut(s) | 574, 1014 |
| BseMII | CTCAG | 4 cut(s) | 6, 557, 800, 1034 |
| BseRI | GAGGAG | 2 cut(s) | 18, 846 |
| BseXI | GCAGC | 2 cut(s) | 251, 604 |
| BshFI | GGCC | 3 cut(s) | 150, 432, 609 |
| BslFI | GGGAC | 1 cut(s) | 714 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 35, 747, 896 |
| BsmAI | GTCTC | 4 cut(s) | 231, 318, 534, 552 |
| BsmFI | GGGAC | 1 cut(s) | 714 |
| BsmI | GAATGC | 2 cut(s) | 82, 403 |
| BsnI | GGCC | 3 cut(s) | 150, 432, 609 |
| Bso31I | GGTCTC | 1 cut(s) | 231 |
| Bsp143I | GATC | 2 cut(s) | 85, 754 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1020 |
| BspANI | GGCC | 3 cut(s) | 150, 432, 609 |
| BspCNI | CTCAG | 4 cut(s) | 7, 556, 799, 1033 |
| BspPI | GGATC | 2 cut(s) | 93, 749 |
| BspTNI | GGTCTC | 1 cut(s) | 231 |
| BsrDI | GCAATG | 2 cut(s) | 574, 1014 |
| BssMI | GATC | 2 cut(s) | 85, 754 |
| Bst2UI | CCWGG | 1 cut(s) | 876 |
| Bst4CI | ACNGT | 6 cut(s) | 172, 181, 439, 626, 854, 950 |
| Bst6I | CTCTTC | 3 cut(s) | 187, 276, 913 |
| BstDEI | CTNAG | 6 cut(s) | 15, 212, 543, 786, 1001, 1020 |
| BstF5I | GGATG | 2 cut(s) | 655, 886 |
| BstKTI | GATC | 2 cut(s) | 88, 757 |
| BstMAI | GTCTC | 4 cut(s) | 231, 318, 534, 552 |
| BstMBI | GATC | 2 cut(s) | 85, 754 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 296, 782 |
| BstNI | CCWGG | 1 cut(s) | 876 |
| BstNSI | RCATGY | 2 cut(s) | 681, 707 |
| BstSCI | CCNGG | 1 cut(s) | 874 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstV1I | GCAGC | 2 cut(s) | 251, 604 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 476 |
| BsuRI | GGCC | 3 cut(s) | 150, 432, 609 |
| BtsCI | GGATG | 2 cut(s) | 655, 886 |
| BtsI | GCAGTG | 1 cut(s) | 901 |
| BtsIMutI | CAGTG | 2 cut(s) | 901, 955 |
| Cfr13I | GGNCC | 2 cut(s) | 572, 938 |
| Csp6I | GTAC | 1 cut(s) | 312 |
| CviAII | CATG | 4 cut(s) | 348, 485, 678, 704 |
| CviJI | RGCY | 9 cut(s) | 91, 150, 299, 432, 609, 864, 902, 1000, 1024 |
| CviKI_1 | RGCY | 9 cut(s) | 91, 150, 299, 432, 609, 864, 902, 1000, 1024 |
| CviQI | GTAC | 1 cut(s) | 312 |
| DdeI | CTNAG | 6 cut(s) | 15, 212, 543, 786, 1001, 1020 |
| DpnI | GATC | 2 cut(s) | 87, 756 |
| DpnII | GATC | 2 cut(s) | 85, 754 |
| Eam1104I | CTCTTC | 3 cut(s) | 187, 276, 913 |
| EarI | CTCTTC | 3 cut(s) | 187, 276, 913 |
| Eco31I | GGTCTC | 1 cut(s) | 231 |
| Eco32I | GATATC | 1 cut(s) | 127 |
| Eco47I | GGWCC | 2 cut(s) | 572, 938 |
| Eco57I | CTGAAG | 1 cut(s) | 978 |
| EcoRII | CCWGG | 1 cut(s) | 874 |
| EcoRV | GATATC | 1 cut(s) | 127 |
| FaeI | CATG | 4 cut(s) | 351, 488, 681, 707 |
| FaqI | GGGAC | 1 cut(s) | 714 |
| FatI | CATG | 4 cut(s) | 347, 484, 677, 703 |
| FauNDI | CATATG | 2 cut(s) | 987, 1028 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 618 |
| FokI | GGATG | 2 cut(s) | 642, 873 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 618 |
| FspBI | CTAG | 4 cut(s) | 81, 375, 861, 891 |
| GluI | GCNGC | 2 cut(s) | 240, 618 |
| HaeIII | GGCC | 3 cut(s) | 150, 432, 609 |
| Hin1II | CATG | 4 cut(s) | 351, 488, 681, 707 |
| HinfI | GANTC | 5 cut(s) | 25, 514, 693, 968, 1006 |
| HphI | GGTGA | 1 cut(s) | 1003 |
| Hpy166II | GTNNAC | 2 cut(s) | 460, 692 |
| Hpy188I | TCNGA | 6 cut(s) | 513, 684, 754, 942, 997, 1037 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 155, 175, 375, 518, 581, 647, 958 |
| Hpy8I | GTNNAC | 2 cut(s) | 460, 692 |
| HpyAV | CCTTC | 5 cut(s) | 161, 182, 251, 359, 771 |
| HpyCH4III | ACNGT | 6 cut(s) | 172, 181, 439, 626, 854, 950 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 22, 64, 239, 620 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 296, 782 |
| HpyF3I | CTNAG | 6 cut(s) | 15, 212, 543, 786, 1001, 1020 |
| Hsp92II | CATG | 4 cut(s) | 351, 488, 681, 707 |
| Kzo9I | GATC | 2 cut(s) | 85, 754 |
| LmnI | GCTCC | 1 cut(s) | 602 |
| Lsp1109I | GCAGC | 2 cut(s) | 251, 604 |
| MaeI | CTAG | 4 cut(s) | 81, 375, 861, 891 |
| MalI | GATC | 2 cut(s) | 87, 756 |
| MboI | GATC | 2 cut(s) | 85, 754 |
| MboII | GAAGA | 4 cut(s) | 134, 204, 263, 900 |
| MfeI | CAATTG | 1 cut(s) | 48 |
| MluCI | AATT | 6 cut(s) | 48, 230, 591, 715, 733, 868 |
| MlyI | GAGTC | 2 cut(s) | 19, 687 |
| MmeI | TCCRAC | 1 cut(s) | 965 |
| MnlI | CCTC | 9 cut(s) | 39, 216, 243, 422, 570, 768, 824, 827, 916 |
| MroXI | GAANNNNTTC | 1 cut(s) | 265 |
| MseI | TTAA | 1 cut(s) | 9 |
| MspR9I | CCNGG | 1 cut(s) | 876 |
| MunI | CAATTG | 1 cut(s) | 48 |
| Mva1269I | GAATGC | 2 cut(s) | 82, 403 |
| MvaI | CCWGG | 1 cut(s) | 876 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 296, 782 |
| NdeI | CATATG | 2 cut(s) | 987, 1028 |
| NdeII | GATC | 2 cut(s) | 85, 754 |
| NlaIII | CATG | 4 cut(s) | 351, 488, 681, 707 |
| NspI | RCATGY | 2 cut(s) | 681, 707 |
| PciI | ACATGT | 2 cut(s) | 677, 703 |
| PctI | GAATGC | 2 cut(s) | 82, 403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 265 |
| PfeI | GAWTC | 3 cut(s) | 514, 968, 1006 |
| PkrI | GCNGC | 2 cut(s) | 241, 619 |
| PleI | GAGTC | 2 cut(s) | 19, 687 |
| PpsI | GAGTC | 2 cut(s) | 19, 687 |
| PscI | ACATGT | 2 cut(s) | 677, 703 |
| PsiI | TTATAA | 1 cut(s) | 525 |
| Psp6I | CCWGG | 1 cut(s) | 874 |
| PspGI | CCWGG | 1 cut(s) | 874 |
| PspPI | GGNCC | 2 cut(s) | 572, 938 |
| RsaI | GTAC | 1 cut(s) | 313 |
| RsaNI | GTAC | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 9 |
| SatI | GCNGC | 2 cut(s) | 240, 618 |
| Sau3AI | GATC | 2 cut(s) | 85, 754 |
| Sau96I | GGNCC | 2 cut(s) | 572, 938 |
| SchI | GAGTC | 2 cut(s) | 19, 687 |
| ScrFI | CCNGG | 1 cut(s) | 876 |
| SetI | ASST | 7 cut(s) | 93, 205, 227, 280, 562, 866, 1002 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SinI | GGWCC | 2 cut(s) | 572, 938 |
| SmlI | CTYRAG | 2 cut(s) | 695, 825 |
| SmoI | CTYRAG | 2 cut(s) | 695, 825 |
| Sse9I | AATT | 6 cut(s) | 48, 230, 591, 715, 733, 868 |
| SspMI | CTAG | 4 cut(s) | 81, 375, 861, 891 |
| StyD4I | CCNGG | 1 cut(s) | 874 |
| TaaI | ACNGT | 6 cut(s) | 172, 181, 439, 626, 854, 950 |
| TaqI | TCGA | 1 cut(s) | 454 |
| TasI | AATT | 6 cut(s) | 48, 230, 591, 715, 733, 868 |
| TfiI | GAWTC | 3 cut(s) | 514, 968, 1006 |
| Tru1I | TTAA | 1 cut(s) | 9 |
| Tru9I | TTAA | 1 cut(s) | 9 |
| TscAI | CASTG | 2 cut(s) | 901, 955 |
| TseI | GCWGC | 2 cut(s) | 239, 617 |
| TspDTI | ATGAA | 4 cut(s) | 135, 846, 875, 918 |
| TspRI | CASTG | 2 cut(s) | 901, 955 |
| VpaK11BI | GGWCC | 2 cut(s) | 572, 938 |
| XapI | RAATTY | 2 cut(s) | 591, 733 |
| XbaI | TCTAGA | 1 cut(s) | 374 |
| XceI | RCATGY | 2 cut(s) | 681, 707 |
| XmnI | GAANNNNTTC | 1 cut(s) | 265 |
| XspI | CTAG | 4 cut(s) | 81, 375, 861, 891 |