gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 67 - 206 | 4.9e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 963 |
| AclWI | GGATC | 1 cut(s) | 148 |
| AcsI | RAATTY | 2 cut(s) | 86, 471 |
| AcuI | CTGAAG | 1 cut(s) | 630 |
| AdeI | CACNNNGTG | 1 cut(s) | 677 |
| AfaI | GTAC | 3 cut(s) | 212, 812, 909 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 963 |
| AflII | CTTAAG | 2 cut(s) | 10, 329 |
| AgsI | TTSAA | 6 cut(s) | 576, 623, 662, 779, 807, 986 |
| AluBI | AGCT | 1 cut(s) | 839 |
| AluI | AGCT | 1 cut(s) | 839 |
| Alw26I | GTCTC | 6 cut(s) | 92, 193, 505, 597, 699, 894 |
| AlwI | GGATC | 1 cut(s) | 148 |
| AoxI | GGCC | 1 cut(s) | 118 |
| ApeKI | GCWGC | 4 cut(s) | 257, 836, 866, 977 |
| ApoI | RAATTY | 2 cut(s) | 86, 471 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 720, 752 |
| AsuHPI | GGTGA | 2 cut(s) | 448, 689 |
| AsuII | TTCGAA | 1 cut(s) | 68 |
| BbsI | GAAGAC | 1 cut(s) | 495 |
| BbvI | GCAGC | 4 cut(s) | 244, 848, 853, 989 |
| BccI | CCATC | 2 cut(s) | 131, 529 |
| BclI | TGATCA | 2 cut(s) | 168, 451 |
| BcoDI | GTCTC | 6 cut(s) | 92, 193, 505, 597, 699, 894 |
| BfaI | CTAG | 3 cut(s) | 270, 309, 921 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BfrI | CTTAAG | 2 cut(s) | 10, 329 |
| BisI | GCNGC | 4 cut(s) | 258, 837, 867, 978 |
| BlpI | GCTNAGC | 1 cut(s) | 558 |
| BlsI | GCNGC | 4 cut(s) | 259, 838, 868, 979 |
| BmsI | GCATC | 2 cut(s) | 712, 738 |
| BpiI | GAAGAC | 1 cut(s) | 495 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 558 |
| Bpu14I | TTCGAA | 1 cut(s) | 68 |
| BsaAI | YACGTR | 1 cut(s) | 219 |
| BsaI | GGTCTC | 1 cut(s) | 597 |
| BsaJI | CCNNGG | 1 cut(s) | 895 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 891, 921 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 963 |
| Bse1I | ACTGG | 1 cut(s) | 50 |
| Bse3DI | GCAATG | 1 cut(s) | 603 |
| BseDI | CCNNGG | 1 cut(s) | 895 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 963 |
| BseMI | GCAATG | 1 cut(s) | 603 |
| BseNI | ACTGG | 1 cut(s) | 50 |
| BseRI | GAGGAG | 1 cut(s) | 687 |
| BseXI | GCAGC | 4 cut(s) | 244, 848, 853, 989 |
| BsgI | GTGCAG | 1 cut(s) | 687 |
| BshFI | GGCC | 1 cut(s) | 120 |
| BslFI | GGGAC | 2 cut(s) | 877, 909 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 963 |
| BsmAI | GTCTC | 6 cut(s) | 92, 193, 505, 597, 699, 894 |
| BsmFI | GGGAC | 2 cut(s) | 877, 909 |
| BsmI | GAATGC | 1 cut(s) | 823 |
| BsnI | GGCC | 1 cut(s) | 120 |
| Bso31I | GGTCTC | 1 cut(s) | 597 |
| Bsp119I | TTCGAA | 1 cut(s) | 68 |
| Bsp1407I | TGTACA | 1 cut(s) | 907 |
| Bsp143I | GATC | 3 cut(s) | 140, 168, 451 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 558 |
| BspANI | GGCC | 1 cut(s) | 120 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspPI | GGATC | 1 cut(s) | 148 |
| BspT104I | TTCGAA | 1 cut(s) | 68 |
| BspTI | CTTAAG | 2 cut(s) | 10, 329 |
| BspTNI | GGTCTC | 1 cut(s) | 597 |
| BsrDI | GCAATG | 1 cut(s) | 603 |
| BsrGI | TGTACA | 1 cut(s) | 907 |
| BsrI | ACTGG | 1 cut(s) | 50 |
| BssECI | CCNNGG | 1 cut(s) | 895 |
| BssMI | GATC | 3 cut(s) | 140, 168, 451 |
| BssT1I | CCWWGG | 1 cut(s) | 895 |
| Bst4CI | ACNGT | 2 cut(s) | 792, 877 |
| Bst6I | CTCTTC | 1 cut(s) | 618 |
| BstAFI | CTTAAG | 2 cut(s) | 10, 329 |
| BstAUI | TGTACA | 1 cut(s) | 907 |
| BstBAI | YACGTR | 1 cut(s) | 219 |
| BstBI | TTCGAA | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 2 cut(s) | 255, 951 |
| BstDEI | CTNAG | 1 cut(s) | 558 |
| BstKTI | GATC | 3 cut(s) | 143, 171, 454 |
| BstMAI | GTCTC | 6 cut(s) | 92, 193, 505, 597, 699, 894 |
| BstMBI | GATC | 3 cut(s) | 140, 168, 451 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 245, 254, 827, 836 |
| BstNSI | RCATGY | 1 cut(s) | 953 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstV1I | GCAGC | 4 cut(s) | 244, 848, 853, 989 |
| BstV2I | GAAGAC | 1 cut(s) | 495 |
| BsuRI | GGCC | 1 cut(s) | 120 |
| BtsI | GCAGTG | 3 cut(s) | 738, 766, 831 |
| BtsIMutI | CAGTG | 3 cut(s) | 738, 766, 831 |
| Cac8I | GCNNGC | 2 cut(s) | 255, 951 |
| Csp6I | GTAC | 3 cut(s) | 211, 811, 908 |
| CviAII | CATG | 6 cut(s) | 81, 166, 354, 713, 814, 950 |
| CviJI | RGCY | 5 cut(s) | 120, 248, 461, 557, 839 |
| CviKI_1 | RGCY | 5 cut(s) | 120, 248, 461, 557, 839 |
| CviQI | GTAC | 3 cut(s) | 211, 811, 908 |
| DdeI | CTNAG | 1 cut(s) | 558 |
| DpnI | GATC | 3 cut(s) | 142, 170, 453 |
| DpnII | GATC | 3 cut(s) | 140, 168, 451 |
| DraIII | CACNNNGTG | 1 cut(s) | 677 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 497 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 497 |
| Eam1104I | CTCTTC | 1 cut(s) | 618 |
| EarI | CTCTTC | 1 cut(s) | 618 |
| Eco130I | CCWWGG | 1 cut(s) | 895 |
| Eco31I | GGTCTC | 1 cut(s) | 597 |
| Eco57I | CTGAAG | 1 cut(s) | 630 |
| EcoRI | GAATTC | 1 cut(s) | 471 |
| EcoT14I | CCWWGG | 1 cut(s) | 895 |
| ErhI | CCWWGG | 1 cut(s) | 895 |
| FaeI | CATG | 6 cut(s) | 84, 169, 357, 716, 817, 953 |
| FaqI | GGGAC | 2 cut(s) | 877, 909 |
| FatI | CATG | 6 cut(s) | 80, 165, 353, 712, 813, 949 |
| FauNDI | CATATG | 1 cut(s) | 477 |
| FbaI | TGATCA | 2 cut(s) | 168, 451 |
| Fnu4HI | GCNGC | 4 cut(s) | 258, 837, 867, 978 |
| Fsp4HI | GCNGC | 4 cut(s) | 258, 837, 867, 978 |
| FspBI | CTAG | 3 cut(s) | 270, 309, 921 |
| GluI | GCNGC | 4 cut(s) | 258, 837, 867, 978 |
| HaeIII | GGCC | 1 cut(s) | 120 |
| Hin1II | CATG | 6 cut(s) | 84, 169, 357, 716, 817, 953 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HinfI | GANTC | 4 cut(s) | 46, 410, 692, 890 |
| HphI | GGTGA | 2 cut(s) | 448, 689 |
| Hpy166II | GTNNAC | 1 cut(s) | 631 |
| Hpy188I | TCNGA | 5 cut(s) | 45, 196, 409, 526, 689 |
| Hpy188III | TCNNGA | 2 cut(s) | 309, 994 |
| Hpy8I | GTNNAC | 1 cut(s) | 631 |
| HpyAV | CCTTC | 2 cut(s) | 165, 660 |
| HpyCH4III | ACNGT | 2 cut(s) | 792, 877 |
| HpyCH4IV | ACGT | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 8 cut(s) | 39, 580, 704, 788, 836, 869, 949, 953 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 245, 254, 827, 836 |
| HpyF3I | CTNAG | 1 cut(s) | 558 |
| HpySE526I | ACGT | 1 cut(s) | 218 |
| Hsp92II | CATG | 6 cut(s) | 84, 169, 357, 716, 817, 953 |
| Ksp22I | TGATCA | 2 cut(s) | 168, 451 |
| Kzo9I | GATC | 3 cut(s) | 140, 168, 451 |
| LmnI | GCTCC | 1 cut(s) | 826 |
| LpnPI | CCDG | 5 cut(s) | 63, 165, 538, 714, 959 |
| Lsp1109I | GCAGC | 4 cut(s) | 244, 848, 853, 989 |
| LweI | GCATC | 2 cut(s) | 712, 738 |
| MaeI | CTAG | 3 cut(s) | 270, 309, 921 |
| MaeII | ACGT | 1 cut(s) | 218 |
| MaeIII | GTNAC | 4 cut(s) | 76, 299, 715, 736 |
| MalI | GATC | 3 cut(s) | 142, 170, 453 |
| MboI | GATC | 3 cut(s) | 140, 168, 451 |
| MboII | GAAGA | 4 cut(s) | 451, 500, 500, 635 |
| MfeI | CAATTG | 1 cut(s) | 16 |
| MlyI | GAGTC | 2 cut(s) | 701, 899 |
| MnlI | CCTC | 7 cut(s) | 104, 176, 330, 619, 708, 762, 937 |
| MseI | TTAA | 6 cut(s) | 11, 107, 330, 360, 587, 882 |
| MspCI | CTTAAG | 2 cut(s) | 10, 329 |
| MunI | CAATTG | 1 cut(s) | 16 |
| Mva1269I | GAATGC | 1 cut(s) | 823 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 245, 254, 827, 836 |
| NdeI | CATATG | 1 cut(s) | 477 |
| NdeII | GATC | 3 cut(s) | 140, 168, 451 |
| NlaIII | CATG | 6 cut(s) | 84, 169, 357, 716, 817, 953 |
| NmuCI | GTSAC | 2 cut(s) | 76, 736 |
| NspI | RCATGY | 1 cut(s) | 953 |
| NspV | TTCGAA | 1 cut(s) | 68 |
| PaeI | GCATGC | 1 cut(s) | 953 |
| PctI | GAATGC | 1 cut(s) | 823 |
| PfeI | GAWTC | 2 cut(s) | 46, 410 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 963 |
| PkrI | GCNGC | 4 cut(s) | 259, 838, 868, 979 |
| PleI | GAGTC | 2 cut(s) | 700, 898 |
| PpsI | GAGTC | 2 cut(s) | 700, 898 |
| Ppu21I | YACGTR | 1 cut(s) | 219 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| RsaI | GTAC | 3 cut(s) | 212, 812, 909 |
| RsaNI | GTAC | 3 cut(s) | 211, 811, 908 |
| SaqAI | TTAA | 6 cut(s) | 11, 107, 330, 360, 587, 882 |
| SatI | GCNGC | 4 cut(s) | 258, 837, 867, 978 |
| Sau3AI | GATC | 3 cut(s) | 140, 168, 451 |
| SchI | GAGTC | 2 cut(s) | 701, 899 |
| SfaNI | GCATC | 2 cut(s) | 712, 738 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SfuI | TTCGAA | 1 cut(s) | 68 |
| SmlI | CTYRAG | 2 cut(s) | 10, 329 |
| SmoI | CTYRAG | 2 cut(s) | 10, 329 |
| SphI | GCATGC | 1 cut(s) | 953 |
| SspI | AATATT | 1 cut(s) | 658 |
| SspMI | CTAG | 3 cut(s) | 270, 309, 921 |
| StyI | CCWWGG | 1 cut(s) | 895 |
| TaaI | ACNGT | 2 cut(s) | 792, 877 |
| TaiI | ACGT | 1 cut(s) | 221 |
| TaqI | TCGA | 3 cut(s) | 68, 135, 995 |
| TatI | WGTACW | 1 cut(s) | 907 |
| TfiI | GAWTC | 2 cut(s) | 46, 410 |
| Tru1I | TTAA | 6 cut(s) | 11, 107, 330, 360, 587, 882 |
| Tru9I | TTAA | 6 cut(s) | 11, 107, 330, 360, 587, 882 |
| TscAI | CASTG | 3 cut(s) | 745, 766, 838 |
| TseFI | GTSAC | 2 cut(s) | 76, 736 |
| TseI | GCWGC | 4 cut(s) | 257, 836, 866, 977 |
| Tsp45I | GTSAC | 2 cut(s) | 76, 736 |
| TspDTI | ATGAA | 7 cut(s) | 17, 140, 342, 464, 501, 554, 830 |
| TspRI | CASTG | 3 cut(s) | 745, 766, 838 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 963 |
| Vha464I | CTTAAG | 2 cut(s) | 10, 329 |
| XapI | RAATTY | 2 cut(s) | 86, 471 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 953 |
| XspI | CTAG | 3 cut(s) | 270, 309, 921 |