gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 197 | 6.9e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 419 |
| AcsI | RAATTY | 1 cut(s) | 113 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AgsI | TTSAA | 5 cut(s) | 158, 296, 335, 393, 587 |
| AleI | CACNNNNGTG | 1 cut(s) | 272 |
| AluBI | AGCT | 2 cut(s) | 222, 583 |
| AluI | AGCT | 2 cut(s) | 222, 583 |
| Alw26I | GTCTC | 2 cut(s) | 12, 514 |
| AoxI | GGCC | 2 cut(s) | 97, 191 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 191 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BccI | CCATC | 3 cut(s) | 116, 148, 158 |
| BclI | TGATCA | 1 cut(s) | 237 |
| BcoDI | GTCTC | 2 cut(s) | 12, 514 |
| BfaI | CTAG | 2 cut(s) | 272, 501 |
| BfmI | CTRYAG | 1 cut(s) | 444 |
| BisI | GCNGC | 1 cut(s) | 441 |
| BlsI | GCNGC | 1 cut(s) | 442 |
| BmgT120I | GGNCC | 1 cut(s) | 191 |
| BmsI | GCATC | 2 cut(s) | 69, 250 |
| BpuEI | CTTGAG | 1 cut(s) | 301 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 1 cut(s) | 100 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 238, 268 |
| Bse3DI | GCAATG | 1 cut(s) | 569 |
| BseDI | CCNNGG | 1 cut(s) | 100 |
| BseGI | GGATG | 1 cut(s) | 562 |
| BseMI | GCAATG | 1 cut(s) | 569 |
| BseMII | CTCAG | 1 cut(s) | 332 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BsgI | GTGCAG | 1 cut(s) | 7 |
| BshFI | GGCC | 2 cut(s) | 99, 193 |
| BsmAI | GTCTC | 2 cut(s) | 12, 514 |
| BsmBI | CGTCTC | 1 cut(s) | 12 |
| BsnI | GGCC | 2 cut(s) | 99, 193 |
| Bsp143I | GATC | 2 cut(s) | 237, 430 |
| Bsp19I | CCATGG | 1 cut(s) | 100 |
| BspANI | GGCC | 2 cut(s) | 99, 193 |
| BspCNI | CTCAG | 1 cut(s) | 333 |
| BsrDI | GCAATG | 1 cut(s) | 569 |
| BssECI | CCNNGG | 1 cut(s) | 100 |
| BssMI | GATC | 2 cut(s) | 237, 430 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 1 cut(s) | 341 |
| BstDSI | CCRYGG | 1 cut(s) | 100 |
| BstF5I | GGATG | 1 cut(s) | 562 |
| BstKTI | GATC | 2 cut(s) | 240, 433 |
| BstMAI | GTCTC | 2 cut(s) | 12, 514 |
| BstMBI | GATC | 2 cut(s) | 237, 430 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 199, 580 |
| BstSFI | CTRYAG | 1 cut(s) | 444 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BsuRI | GGCC | 2 cut(s) | 99, 193 |
| BtgI | CCRYGG | 1 cut(s) | 100 |
| BtsCI | GGATG | 1 cut(s) | 562 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 1 cut(s) | 191 |
| CviAII | CATG | 1 cut(s) | 101 |
| CviJI | RGCY | 7 cut(s) | 20, 99, 193, 222, 310, 440, 583 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 99, 193, 222, 310, 440, 583 |
| DdeI | CTNAG | 1 cut(s) | 341 |
| DpnI | GATC | 2 cut(s) | 239, 432 |
| DpnII | GATC | 2 cut(s) | 237, 430 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| Esp3I | CGTCTC | 1 cut(s) | 12 |
| FaeI | CATG | 1 cut(s) | 104 |
| FatI | CATG | 1 cut(s) | 100 |
| FauNDI | CATATG | 1 cut(s) | 471 |
| FbaI | TGATCA | 1 cut(s) | 237 |
| Fnu4HI | GCNGC | 1 cut(s) | 441 |
| FokI | GGATG | 1 cut(s) | 569 |
| Fsp4HI | GCNGC | 1 cut(s) | 441 |
| FspBI | CTAG | 2 cut(s) | 272, 501 |
| GluI | GCNGC | 1 cut(s) | 441 |
| HaeIII | GGCC | 2 cut(s) | 99, 193 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 104 |
| HinfI | GANTC | 2 cut(s) | 42, 389 |
| Hpy166II | GTNNAC | 1 cut(s) | 107 |
| Hpy188I | TCNGA | 6 cut(s) | 78, 181, 342, 388, 463, 533 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 1 cut(s) | 107 |
| HpyAV | CCTTC | 1 cut(s) | 614 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 82, 263 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 199, 580 |
| HpyF3I | CTNAG | 1 cut(s) | 341 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 1 cut(s) | 104 |
| Ksp22I | TGATCA | 1 cut(s) | 237 |
| Kzo9I | GATC | 2 cut(s) | 237, 430 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 6 cut(s) | 34, 174, 200, 270, 477, 579 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 2 cut(s) | 69, 250 |
| MaeI | CTAG | 2 cut(s) | 272, 501 |
| MalI | GATC | 2 cut(s) | 239, 432 |
| MboI | GATC | 2 cut(s) | 237, 430 |
| MboII | GAAGA | 3 cut(s) | 83, 168, 170 |
| MfeI | CAATTG | 1 cut(s) | 434 |
| MluCI | AATT | 6 cut(s) | 55, 113, 184, 228, 335, 434 |
| MlyI | GAGTC | 1 cut(s) | 36 |
| MmeI | TCCRAC | 2 cut(s) | 189, 384 |
| MnlI | CCTC | 3 cut(s) | 89, 294, 527 |
| MslI | CAYNNNNRTG | 2 cut(s) | 272, 353 |
| MunI | CAATTG | 1 cut(s) | 434 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 199, 580 |
| NcoI | CCATGG | 1 cut(s) | 100 |
| NdeI | CATATG | 1 cut(s) | 471 |
| NdeII | GATC | 2 cut(s) | 237, 430 |
| NlaIII | CATG | 1 cut(s) | 104 |
| OliI | CACNNNNGTG | 1 cut(s) | 272 |
| PfeI | GAWTC | 1 cut(s) | 389 |
| PkrI | GCNGC | 1 cut(s) | 442 |
| PleI | GAGTC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 36 |
| PsiI | TTATAA | 1 cut(s) | 419 |
| PspPI | GGNCC | 1 cut(s) | 191 |
| RseI | CAYNNNNRTG | 2 cut(s) | 272, 353 |
| SatI | GCNGC | 1 cut(s) | 441 |
| Sau3AI | GATC | 2 cut(s) | 237, 430 |
| Sau96I | GGNCC | 1 cut(s) | 191 |
| SchI | GAGTC | 1 cut(s) | 36 |
| SetI | ASST | 5 cut(s) | 224, 305, 569, 585, 606 |
| SfaNI | GCATC | 2 cut(s) | 69, 250 |
| SfcI | CTRYAG | 1 cut(s) | 444 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 272, 353 |
| SmlI | CTYRAG | 1 cut(s) | 316 |
| SmoI | CTYRAG | 1 cut(s) | 316 |
| Sse9I | AATT | 6 cut(s) | 55, 113, 184, 228, 335, 434 |
| SspI | AATATT | 1 cut(s) | 480 |
| SspMI | CTAG | 2 cut(s) | 272, 501 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaqI | TCGA | 3 cut(s) | 40, 45, 94 |
| TasI | AATT | 6 cut(s) | 55, 113, 184, 228, 335, 434 |
| TfiI | GAWTC | 1 cut(s) | 389 |
| TscAI | CASTG | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 440 |
| TspDTI | ATGAA | 4 cut(s) | 63, 488, 573, 596 |
| TspGWI | ACGGA | 1 cut(s) | 25 |
| TspRI | CASTG | 1 cut(s) | 31 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XspI | CTAG | 2 cut(s) | 272, 501 |