RchiOBHm_Chr7g0234441

transposition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000034
Physical Location & Seq
Forward (+)
59105473 .. 59111063
5591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21009

Sequence Viewer

Length: 1245 bp
ATGGCTTCATTCTCACAAACTTGCAATGTCGTCTCTGTGAGACTTGATGAAAGCAACTATCCTACCTGGCTGTTTCAAATGGAGCATCATTTGAGAGGTCACGGCCTCCTCAAGCTGGTGGATGGATCTCTTCCATGTCCTCCTCCATTCCTAGTGGCTGAGGATGGAACTCGTACTGTTAACACCTGTGCTCGAGAGAAGTGGCTTGAGCAGGACAGCTTACTGATCTCATTGATCACCAATACTCTTTCTCCTGAGGCACTTACACTTGTTATTGGCTGCTGCTCCTCGATGGAGGTATGGCTCACACTCAAGCAGAGGTATGCTACTGTTTCTGAGGCACATGTTATGCAATTAAAATCTACACTACAAAACATACAAAAAGGAAGTGATTCTATTGAGAAATACCTGCTGAGATTTAAAAGTGTAAGGAATCAACTAGCTGTCCTTGGTGTGAGAATGTCTGATCAAGATGTTAAGGTGCTTATACTAGCTGGATTGCCTAGTGAATATGGCCATACTAGGCAGATTATTAGAGGCAAAGCTCATGTTGATCTTGAAGAAGTCAGATCATTGTTGCTCTCTGCGGAAAGTGAATTTGAGTTAGAGCACAAGGCACTGCCACTATCACCTTTCACAGCTATGCATGCACAGAATGGTCTCACTGGTATGACTGGTCCTGGTATACACTCTGGAAGCTCCATTTTTAATACTAGTATTCCTTGGTCTGCAAATTGTGCTTCTTCAGCATCATGTGCACTATCTACTGGTCCTGCTGGCTTGATTATTAATTACAGTAATGCTGCTACTGTACCTACTATGAGTCACATGAACTACACTACACCTCAAGCATCAGCCAATTTTGTGAATCCATCTGGTGGAGGTACTACTATGAGTTTTGTGCATCCTTCTGCTAGTTCTAGCAGCAATACACCAGTTTTTCCATACATTACATCTGGATATACCTCTGGTTACATACCTTCATCCTTTGTGAGCAACACATCAGGCCTGAGCAAATTGTCAACTGGCACAACTCTGTCTCAATCACCTTACATGATGAATGGCTCTCCATCTACAATTGGATATGTTACACCACCATGTAACTCTACTGCAACCTCTGGTCTTATTGTTCAGACAAACAATGATGCTCAGTTTAGATATCTTTGTAGCAACCTAGTATACGTAGTGACCACATTTGTAAGCTGCATGAACCTTCATGTATCTTCCGTATCTAGATCCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HTH_21 rve

Protein Analysis

414

Amino Acids

44.53

Weight (kDa)

6.85

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 27 - 198 3.4e-24 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 878
AccI GTMKAC 2 cut(s) 685, 1179
AciI CCGC 1 cut(s) 587
AclWI GGATC 2 cut(s) 133, 1230
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 3 cut(s) 175, 813, 886
AfiI CCNNNNNNNGG 2 cut(s) 115, 878
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 2 cut(s) 77, 560
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 2 cut(s) 65, 679
AluBI AGCT 8 cut(s) 115, 219, 443, 494, 545, 641, 699, 1203
AluI AGCT 8 cut(s) 115, 219, 443, 494, 545, 641, 699, 1203
Alw21I GWGCWC 3 cut(s) 193, 612, 760
Alw26I GTCTC 4 cut(s) 34, 37, 665, 1044
Alw44I GTGCAC 1 cut(s) 756
AlwI GGATC 2 cut(s) 133, 1230
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 3 cut(s) 103, 514, 1006
ApaLI GTGCAC 1 cut(s) 756
ApeKI GCWGC 5 cut(s) 279, 282, 803, 924, 1203
ApoI RAATTY 1 cut(s) 596
AseI ATTAAT 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 677, 770
AsuHPI GGTGA 3 cut(s) 229, 621, 1038
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 677, 770
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 760
BalI TGGCCA 1 cut(s) 516
Bbv12I GWGCWC 3 cut(s) 193, 612, 760
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 266, 269, 790, 936, 1190
BccI CCATC 5 cut(s) 116, 158, 286, 880, 1078
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 67, 681
BclI TGATCA 2 cut(s) 234, 466
BcoDI GTCTC 4 cut(s) 34, 37, 665, 1044
BcuI ACTAGT 1 cut(s) 713
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 5 cut(s) 280, 283, 804, 925, 1204
BlsI GCNGC 5 cut(s) 281, 284, 805, 926, 1205
Bme1390I CCNGG 2 cut(s) 67, 681
Bme18I GGWCC 2 cut(s) 677, 770
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 677, 770
BmrFI CCNGG 2 cut(s) 67, 681
BmsI GCATC 5 cut(s) 94, 758, 860, 913, 1135
Bpu10I CCTNAGC 2 cut(s) 159, 1010
BpuEI CTTGAG 4 cut(s) 95, 227, 296, 831
BsaAI YACGTR 1 cut(s) 1183
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 448, 722
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 878
Bse1I ACTGG 5 cut(s) 670, 679, 772, 935, 1030
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 67, 681
BseDI CCNNGG 2 cut(s) 448, 722
BseGI GGATG 4 cut(s) 127, 169, 904, 983
BseLI CCNNNNNNNGG 2 cut(s) 115, 878
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 6 cut(s) 150, 246, 327, 404, 1001, 1163
BseNI ACTGG 5 cut(s) 670, 679, 772, 935, 1030
BseRI GAGGAG 3 cut(s) 98, 132, 277
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 5 cut(s) 266, 269, 790, 936, 1190
BshFI GGCC 3 cut(s) 105, 516, 1008
BsiHKAI GWGCWC 3 cut(s) 193, 612, 760
BsiHKCI CYCGRG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 115, 878
BsmAI GTCTC 4 cut(s) 34, 37, 665, 1044
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 3 cut(s) 105, 516, 1008
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 193, 612, 760
Bsp143I GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
BspACI CCGC 1 cut(s) 587
BspANI GGCC 3 cut(s) 105, 516, 1008
BspCNI CTCAG 6 cut(s) 151, 247, 328, 405, 1002, 1162
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 133, 1230
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 5 cut(s) 670, 679, 772, 935, 1030
BssECI CCNNGG 2 cut(s) 448, 722
BssMI GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
BssNAI GTATAC 2 cut(s) 686, 1180
BssT1I CCWWGG 2 cut(s) 448, 722
Bst1107I GTATAC 2 cut(s) 686, 1180
Bst2UI CCWGG 2 cut(s) 67, 681
Bst4CI ACNGT 4 cut(s) 178, 331, 797, 811
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 2 cut(s) 737, 755
BstBAI YACGTR 1 cut(s) 1183
BstC8I GCNNGC 2 cut(s) 648, 778
BstDEI CTNAG 6 cut(s) 159, 255, 336, 413, 1010, 1149
BstF5I GGATG 4 cut(s) 127, 169, 904, 983
BstKTI GATC 7 cut(s) 128, 228, 237, 469, 556, 572, 1238
BstMAI GTCTC 4 cut(s) 34, 37, 665, 1044
BstMBI GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
BstMWI GCNNNNNNNGC 4 cut(s) 647, 737, 746, 755
BstNI CCWGG 2 cut(s) 67, 681
BstNSI RCATGY 2 cut(s) 347, 650
BstSCI CCNGG 2 cut(s) 65, 679
BstSLI GKGCMC 1 cut(s) 760
BstSNI TACGTA 1 cut(s) 1183
BstV1I GCAGC 5 cut(s) 266, 269, 790, 936, 1190
BstX2I RGATCY 2 cut(s) 125, 1235
BstYI RGATCY 2 cut(s) 125, 1235
BstZ17I GTATAC 2 cut(s) 686, 1180
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 3 cut(s) 105, 516, 1008
BtsCI GGATG 4 cut(s) 127, 169, 904, 983
BtsI GCAGTG 1 cut(s) 617
BtsIMutI CAGTG 2 cut(s) 617, 663
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 648, 778
Cfr13I GGNCC 2 cut(s) 677, 770
Csp6I GTAC 3 cut(s) 174, 812, 885
CviQI GTAC 3 cut(s) 174, 812, 885
DdeI CTNAG 6 cut(s) 159, 255, 336, 413, 1010, 1149
DpnI GATC 7 cut(s) 127, 227, 236, 468, 555, 571, 1237
DpnII GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco105I TACGTA 1 cut(s) 1183
Eco130I CCWWGG 2 cut(s) 448, 722
Eco147I AGGCCT 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 665
Eco32I GATATC 1 cut(s) 1160
Eco47I GGWCC 2 cut(s) 677, 770
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 65, 679
EcoRV GATATC 1 cut(s) 1160
EcoT14I CCWWGG 2 cut(s) 448, 722
EcoT22I ATGCAT 1 cut(s) 648
ErhI CCWWGG 2 cut(s) 448, 722
Esp3I CGTCTC 1 cut(s) 37
FbaI TGATCA 2 cut(s) 234, 466
FblI GTMKAC 2 cut(s) 685, 1179
Fnu4HI GCNGC 5 cut(s) 280, 283, 804, 925, 1204
FokI GGATG 4 cut(s) 134, 176, 891, 970
Fsp4HI GCNGC 5 cut(s) 280, 283, 804, 925, 1204
GluI GCNGC 5 cut(s) 280, 283, 804, 925, 1204
HaeIII GGCC 3 cut(s) 105, 516, 1008
HincII GTYRAC 2 cut(s) 181, 1023
HindII GTYRAC 2 cut(s) 181, 1023
HinfI GANTC 4 cut(s) 392, 433, 823, 868
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 3 cut(s) 229, 621, 1038
Hpy166II GTNNAC 5 cut(s) 181, 686, 758, 1023, 1180
Hpy188I TCNGA 4 cut(s) 337, 466, 569, 1134
Hpy188III TCNNGA 7 cut(s) 194, 254, 470, 557, 693, 957, 1233
Hpy8I GTNNAC 5 cut(s) 181, 686, 758, 1023, 1180
HpyAV CCTTC 3 cut(s) 918, 990, 1223
HpyCH4III ACNGT 4 cut(s) 178, 331, 797, 811
HpyCH4IV ACGT 1 cut(s) 1182
HpyCH4V TGCA 9 cut(s) 24, 352, 646, 650, 731, 758, 904, 1112, 1206
HpyF10VI GCNNNNNNNGC 4 cut(s) 647, 737, 746, 755
HpyF3I CTNAG 6 cut(s) 159, 255, 336, 413, 1010, 1149
HpySE526I ACGT 1 cut(s) 1182
Ksp22I TGATCA 2 cut(s) 234, 466
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
LmnI GCTCC 3 cut(s) 82, 290, 704
Lsp1109I GCAGC 5 cut(s) 266, 269, 790, 936, 1190
LweI GCATC 5 cut(s) 94, 758, 860, 913, 1135
MaeII ACGT 1 cut(s) 1182
MaeIII GTNAC 6 cut(s) 98, 824, 971, 1087, 1100, 1186
MalI GATC 7 cut(s) 127, 227, 236, 468, 555, 571, 1237
MboI GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
MboII GAAGA 4 cut(s) 122, 572, 735, 1215
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 2 cut(s) 125, 1235
MhlI GDGCHC 3 cut(s) 193, 612, 760
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 7 cut(s) 353, 596, 733, 790, 859, 1016, 1077
MluNI TGGCCA 1 cut(s) 516
MlyI GAGTC 1 cut(s) 832
Mox20I TGGCCA 1 cut(s) 516
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 391
MscI TGGCCA 1 cut(s) 516
MseI TTAA 6 cut(s) 180, 356, 420, 477, 708, 789
MslI CAYNNNNRTG 3 cut(s) 641, 668, 1096
Msp20I TGGCCA 1 cut(s) 516
MspR9I CCNGG 2 cut(s) 67, 681
MunI CAATTG 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 67, 681
MwoI GCNNNNNNNGC 4 cut(s) 647, 737, 746, 755
NdeII GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
NmuCI GTSAC 3 cut(s) 98, 824, 1186
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 2 cut(s) 347, 650
PaeI GCATGC 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 1008
PciI ACATGT 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 392, 433, 868
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 5 cut(s) 281, 284, 805, 926, 1205
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
Ppu21I YACGTR 1 cut(s) 1183
PscI ACATGT 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 65, 679
PspGI CCWGG 2 cut(s) 65, 679
PspPI GGNCC 2 cut(s) 677, 770
PsuI RGATCY 2 cut(s) 125, 1235
RsaI GTAC 3 cut(s) 175, 813, 886
RsaNI GTAC 3 cut(s) 174, 812, 885
RseI CAYNNNNRTG 3 cut(s) 641, 668, 1096
SaqAI TTAA 6 cut(s) 180, 356, 420, 477, 708, 789
SatI GCNGC 5 cut(s) 280, 283, 804, 925, 1204
Sau3AI GATC 7 cut(s) 125, 225, 234, 466, 553, 569, 1235
Sau96I GGNCC 2 cut(s) 677, 770
SchI GAGTC 1 cut(s) 832
ScrFI CCNGG 2 cut(s) 67, 681
SduI GDGCHC 3 cut(s) 193, 612, 760
SfaNI GCATC 5 cut(s) 94, 758, 860, 913, 1135
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 677, 770
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 3 cut(s) 641, 668, 1096
SmlI CTYRAG 5 cut(s) 110, 192, 206, 311, 846
SmoI CTYRAG 5 cut(s) 110, 192, 206, 311, 846
SnaBI TACGTA 1 cut(s) 1183
SpeI ACTAGT 1 cut(s) 713
SphI GCATGC 1 cut(s) 650
Sse9I AATT 7 cut(s) 353, 596, 733, 790, 859, 1016, 1077
SseBI AGGCCT 1 cut(s) 1008
SsiI CCGC 1 cut(s) 587
StuI AGGCCT 1 cut(s) 1008
StyD4I CCNGG 2 cut(s) 65, 679
StyI CCWWGG 2 cut(s) 448, 722
TaaI ACNGT 4 cut(s) 178, 331, 797, 811
TaiI ACGT 1 cut(s) 1185
TaqI TCGA 2 cut(s) 193, 290
TasI AATT 7 cut(s) 353, 596, 733, 790, 859, 1016, 1077
TfiI GAWTC 3 cut(s) 392, 433, 868
Tru1I TTAA 6 cut(s) 180, 356, 420, 477, 708, 789
Tru9I TTAA 6 cut(s) 180, 356, 420, 477, 708, 789
TscAI CASTG 2 cut(s) 624, 670
TseFI GTSAC 3 cut(s) 98, 824, 1186
TseI GCWGC 5 cut(s) 279, 282, 803, 924, 1203
Tsp45I GTSAC 3 cut(s) 98, 824, 1186
TspDTI ATGAA 6 cut(s) 63, 845, 972, 1073, 1205, 1223
TspGWI ACGGA 1 cut(s) 1216
TspRI CASTG 2 cut(s) 624, 670
Van91I CCANNNNNTGG 1 cut(s) 878
VneI GTGCAC 1 cut(s) 756
VpaK11BI GGWCC 2 cut(s) 677, 770
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 1 cut(s) 596
XbaI TCTAGA 1 cut(s) 1232
XceI RCATGY 2 cut(s) 347, 650
XhoI CTCGAG 1 cut(s) 192
XmiI GTMKAC 2 cut(s) 685, 1179
XmnI GAANNNNTTC 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.