ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 14 - 161 | 6.4e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 232 |
| AciI | CCGC | 1 cut(s) | 161 |
| AclWI | GGATC | 3 cut(s) | 98, 128, 444 |
| AcsI | RAATTY | 2 cut(s) | 164, 371 |
| AcuI | CTGAAG | 2 cut(s) | 72, 221 |
| AfaI | GTAC | 1 cut(s) | 287 |
| AfeI | AGCGCT | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 268, 432 |
| AgsI | TTSAA | 3 cut(s) | 129, 402, 460 |
| AluBI | AGCT | 6 cut(s) | 77, 182, 205, 212, 241, 317 |
| AluI | AGCT | 6 cut(s) | 77, 182, 205, 212, 241, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 184 |
| AlwI | GGATC | 3 cut(s) | 98, 128, 444 |
| Ama87I | CYCGRG | 1 cut(s) | 449 |
| Aor51HI | AGCGCT | 1 cut(s) | 281 |
| AoxI | GGCC | 1 cut(s) | 440 |
| ApeKI | GCWGC | 2 cut(s) | 277, 344 |
| ApoI | RAATTY | 2 cut(s) | 164, 371 |
| AspLEI | GCGC | 1 cut(s) | 282 |
| AspS9I | GGNCC | 1 cut(s) | 100 |
| AvaI | CYCGRG | 1 cut(s) | 449 |
| AvaII | GGWCC | 1 cut(s) | 100 |
| BanII | GRGCYC | 1 cut(s) | 184 |
| Bbv12I | GWGCWC | 1 cut(s) | 184 |
| BbvCI | CCTCAGC | 1 cut(s) | 444 |
| BbvI | GCAGC | 2 cut(s) | 289, 356 |
| BccI | CCATC | 2 cut(s) | 56, 437 |
| BceAI | ACGGC | 2 cut(s) | 309, 430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 333, 367 |
| BciVI | GTATCC | 1 cut(s) | 146 |
| BfaI | CTAG | 3 cut(s) | 117, 209, 308 |
| BfoI | RGCGCY | 1 cut(s) | 283 |
| BfuI | GTATCC | 1 cut(s) | 146 |
| BisI | GCNGC | 2 cut(s) | 278, 345 |
| BlsI | GCNGC | 2 cut(s) | 279, 346 |
| Bme18I | GGWCC | 1 cut(s) | 100 |
| BmeT110I | CYCGRG | 1 cut(s) | 449 |
| BmgT120I | GGNCC | 1 cut(s) | 100 |
| BmiI | GGNNCC | 1 cut(s) | 101 |
| Bpu10I | CCTNAGC | 1 cut(s) | 444 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| BsaBI | GATNNNNATC | 1 cut(s) | 467 |
| BsaJI | CCNNGG | 1 cut(s) | 450 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 268, 432 |
| Bse8I | GATNNNNATC | 1 cut(s) | 467 |
| BseDI | CCNNGG | 1 cut(s) | 450 |
| BseJI | GATNNNNATC | 1 cut(s) | 467 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 268, 432 |
| BseMII | CTCAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 2 cut(s) | 289, 356 |
| BseYI | CCCAGC | 1 cut(s) | 73 |
| BshFI | GGCC | 1 cut(s) | 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 184 |
| BsiHKCI | CYCGRG | 1 cut(s) | 449 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 268, 432 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 442 |
| BsoBI | CYCGRG | 1 cut(s) | 449 |
| Bsp1286I | GDGCHC | 1 cut(s) | 184 |
| Bsp143I | GATC | 3 cut(s) | 90, 120, 436 |
| BspACI | CCGC | 1 cut(s) | 161 |
| BspANI | GGCC | 1 cut(s) | 442 |
| BspCNI | CTCAG | 1 cut(s) | 457 |
| BspLI | GGNNCC | 1 cut(s) | 101 |
| BspPI | GGATC | 3 cut(s) | 98, 128, 444 |
| BssECI | CCNNGG | 1 cut(s) | 450 |
| BssMI | GATC | 3 cut(s) | 90, 120, 436 |
| Bst6I | CTCTTC | 2 cut(s) | 16, 48 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 1 cut(s) | 444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 430 |
| BstH2I | RGCGCY | 1 cut(s) | 283 |
| BstHHI | GCGC | 1 cut(s) | 282 |
| BstKTI | GATC | 3 cut(s) | 93, 123, 439 |
| BstMBI | GATC | 3 cut(s) | 90, 120, 436 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 279 |
| BstV1I | GCAGC | 2 cut(s) | 289, 356 |
| BsuI | GTATCC | 1 cut(s) | 146 |
| BsuRI | GGCC | 1 cut(s) | 442 |
| BtsI | GCAGTG | 1 cut(s) | 35 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| CfoI | GCGC | 1 cut(s) | 282 |
| Cfr13I | GGNCC | 1 cut(s) | 100 |
| CseI | GACGC | 1 cut(s) | 373 |
| Csp6I | GTAC | 1 cut(s) | 286 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 27, 62 |
| CviAII | CATG | 2 cut(s) | 268, 289 |
| CviQI | GTAC | 1 cut(s) | 286 |
| DdeI | CTNAG | 1 cut(s) | 444 |
| DpnI | GATC | 3 cut(s) | 92, 122, 438 |
| DpnII | GATC | 3 cut(s) | 90, 120, 436 |
| Eam1104I | CTCTTC | 2 cut(s) | 16, 48 |
| EarI | CTCTTC | 2 cut(s) | 16, 48 |
| Ecl136II | GAGCTC | 1 cut(s) | 182 |
| Eco24I | GRGCYC | 1 cut(s) | 184 |
| Eco47I | GGWCC | 1 cut(s) | 100 |
| Eco47III | AGCGCT | 1 cut(s) | 281 |
| Eco53kI | GAGCTC | 1 cut(s) | 182 |
| Eco57I | CTGAAG | 2 cut(s) | 72, 221 |
| Eco88I | CYCGRG | 1 cut(s) | 449 |
| EcoICRI | GAGCTC | 1 cut(s) | 182 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 430 |
| EcoRI | GAATTC | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 1 cut(s) | 184 |
| FaeI | CATG | 2 cut(s) | 271, 292 |
| FaiI | YATR | 5 cut(s) | 81, 269, 290, 304, 411 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 2 cut(s) | 267, 288 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 2 cut(s) | 278, 345 |
| FriOI | GRGCYC | 1 cut(s) | 184 |
| Fsp4HI | GCNGC | 2 cut(s) | 278, 345 |
| FspBI | CTAG | 3 cut(s) | 117, 209, 308 |
| GlaI | GCGC | 1 cut(s) | 281 |
| GluI | GCNGC | 2 cut(s) | 278, 345 |
| GsaI | CCCAGC | 1 cut(s) | 77 |
| HaeII | RGCGCY | 1 cut(s) | 283 |
| HaeIII | GGCC | 1 cut(s) | 442 |
| HgaI | GACGC | 1 cut(s) | 373 |
| HhaI | GCGC | 1 cut(s) | 282 |
| Hin1II | CATG | 2 cut(s) | 271, 292 |
| Hin6I | GCGC | 1 cut(s) | 280 |
| HinP1I | GCGC | 1 cut(s) | 280 |
| HinfI | GANTC | 2 cut(s) | 247, 365 |
| Hpy166II | GTNNAC | 3 cut(s) | 35, 176, 233 |
| Hpy188I | TCNGA | 3 cut(s) | 114, 152, 370 |
| Hpy188III | TCNNGA | 3 cut(s) | 46, 94, 244 |
| Hpy8I | GTNNAC | 3 cut(s) | 35, 176, 233 |
| HpyAV | CCTTC | 1 cut(s) | 11 |
| HpyCH4V | TGCA | 1 cut(s) | 221 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 279 |
| HpyF3I | CTNAG | 1 cut(s) | 444 |
| Hsp92II | CATG | 2 cut(s) | 271, 292 |
| HspAI | GCGC | 1 cut(s) | 280 |
| Kzo9I | GATC | 3 cut(s) | 90, 120, 436 |
| LpnPI | CCDG | 7 cut(s) | 87, 259, 268, 275, 333, 369, 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 289, 356 |
| MaeI | CTAG | 3 cut(s) | 117, 209, 308 |
| MaeIII | GTNAC | 1 cut(s) | 189 |
| MalI | GATC | 3 cut(s) | 92, 122, 438 |
| MboI | GATC | 3 cut(s) | 90, 120, 436 |
| MboII | GAAGA | 4 cut(s) | 33, 65, 472, 491 |
| MfeI | CAATTG | 1 cut(s) | 85 |
| MhlI | GDGCHC | 1 cut(s) | 184 |
| MluCI | AATT | 6 cut(s) | 41, 85, 124, 164, 371, 486 |
| MnlI | CCTC | 5 cut(s) | 90, 347, 436, 445, 453 |
| MseI | TTAA | 2 cut(s) | 5, 499 |
| MspA1I | CMGCKG | 1 cut(s) | 161 |
| MunI | CAATTG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 279 |
| NdeII | GATC | 3 cut(s) | 90, 120, 436 |
| NlaIII | CATG | 2 cut(s) | 271, 292 |
| NlaIV | GGNNCC | 1 cut(s) | 101 |
| PfeI | GAWTC | 2 cut(s) | 247, 365 |
| PkrI | GCNGC | 2 cut(s) | 279, 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 184 |
| PspFI | CCCAGC | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 1 cut(s) | 101 |
| PspPI | GGNCC | 1 cut(s) | 100 |
| RsaI | GTAC | 1 cut(s) | 287 |
| RsaNI | GTAC | 1 cut(s) | 286 |
| SacI | GAGCTC | 1 cut(s) | 184 |
| SaqAI | TTAA | 2 cut(s) | 5, 499 |
| SatI | GCNGC | 2 cut(s) | 278, 345 |
| Sau3AI | GATC | 3 cut(s) | 90, 120, 436 |
| Sau96I | GGNCC | 1 cut(s) | 100 |
| SduI | GDGCHC | 1 cut(s) | 184 |
| SetI | ASST | 9 cut(s) | 79, 184, 207, 214, 243, 264, 309, 319, 339 |
| SinI | GGWCC | 1 cut(s) | 100 |
| SmlI | CTYRAG | 1 cut(s) | 242 |
| SmoI | CTYRAG | 1 cut(s) | 242 |
| Sse9I | AATT | 6 cut(s) | 41, 85, 124, 164, 371, 486 |
| SsiI | CCGC | 1 cut(s) | 161 |
| SspMI | CTAG | 3 cut(s) | 117, 209, 308 |
| SstI | GAGCTC | 1 cut(s) | 184 |
| TaqI | TCGA | 2 cut(s) | 339, 471 |
| TasI | AATT | 6 cut(s) | 41, 85, 124, 164, 371, 486 |
| TfiI | GAWTC | 2 cut(s) | 247, 365 |
| Tru1I | TTAA | 2 cut(s) | 5, 499 |
| Tru9I | TTAA | 2 cut(s) | 5, 499 |
| TscAI | CASTG | 1 cut(s) | 35 |
| TseI | GCWGC | 2 cut(s) | 277, 344 |
| TspRI | CASTG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 1 cut(s) | 100 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 430 |
| XapI | RAATTY | 2 cut(s) | 164, 371 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XspI | CTAG | 3 cut(s) | 117, 209, 308 |