gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1286 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1608 |
| AciI | CCGC | 2 cut(s) | 327, 2355 |
| AclWI | GGATC | 5 cut(s) | 372, 494, 642, 2400, 2415 |
| AcsI | RAATTY | 6 cut(s) | 866, 898, 980, 1348, 1393, 1413 |
| AcuI | CTGAAG | 2 cut(s) | 678, 797 |
| AfaI | GTAC | 2 cut(s) | 1496, 1596 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 360, 767, 1485, 1608, 2388 |
| AflII | CTTAAG | 1 cut(s) | 629 |
| AgsI | TTSAA | 7 cut(s) | 137, 251, 832, 871, 1280, 1354, 2279 |
| AjnI | CCWGG | 1 cut(s) | 928 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1229, 1261 |
| Alw21I | GWGCWC | 3 cut(s) | 361, 1410, 2389 |
| Alw26I | GTCTC | 5 cut(s) | 383, 648, 802, 1265, 1696 |
| Alw44I | GTGCAC | 1 cut(s) | 1406 |
| AlwI | GGATC | 5 cut(s) | 372, 494, 642, 2400, 2415 |
| Ama87I | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| AoxI | GGCC | 2 cut(s) | 454, 1501 |
| ApaLI | GTGCAC | 1 cut(s) | 1406 |
| ApeKI | GCWGC | 7 cut(s) | 298, 494, 512, 515, 1547, 2326, 2415 |
| ApoI | RAATTY | 6 cut(s) | 866, 898, 980, 1348, 1393, 1413 |
| AspS9I | GGNCC | 2 cut(s) | 455, 1501 |
| AsuC2I | CCSGG | 2 cut(s) | 768, 769 |
| AsuHPI | GGTGA | 8 cut(s) | 16, 85, 304, 768, 980, 1208, 1619, 2332 |
| AsuII | TTCGAA | 2 cut(s) | 1012, 1090 |
| AvaI | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| BaeGI | GKGCMC | 2 cut(s) | 946, 1410 |
| BauI | CACGAG | 3 cut(s) | 405, 498, 2419 |
| Bbv12I | GWGCWC | 3 cut(s) | 361, 1410, 2389 |
| BbvI | GCAGC | 7 cut(s) | 310, 481, 502, 524, 1534, 2338, 2402 |
| BccI | CCATC | 7 cut(s) | 158, 331, 596, 1031, 1171, 1639, 2359 |
| BceAI | ACGGC | 1 cut(s) | 1143 |
| BciT130I | CCWGG | 1 cut(s) | 930 |
| BcnI | CCSGG | 2 cut(s) | 768, 769 |
| BcoDI | GTCTC | 5 cut(s) | 383, 648, 802, 1265, 1696 |
| BfaI | CTAG | 4 cut(s) | 171, 1421, 1622, 2199 |
| BfmI | CTRYAG | 1 cut(s) | 1224 |
| BfrI | CTTAAG | 1 cut(s) | 629 |
| BfuAI | ACCTGC | 1 cut(s) | 1286 |
| BglII | AGATCT | 2 cut(s) | 267, 2295 |
| BisI | GCNGC | 7 cut(s) | 299, 495, 513, 516, 1548, 2327, 2416 |
| BlsI | GCNGC | 7 cut(s) | 300, 496, 514, 517, 1549, 2328, 2417 |
| Bme1390I | CCNGG | 3 cut(s) | 768, 769, 930 |
| BmeT110I | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| BmgT120I | GGNCC | 2 cut(s) | 455, 1501 |
| BmrFI | CCNGG | 3 cut(s) | 768, 769, 930 |
| BmsI | GCATC | 9 cut(s) | 111, 247, 267, 285, 1438, 1621, 2275, 2295, 2313 |
| BpmI | CTGGAG | 2 cut(s) | 249, 2277 |
| Bpu14I | TTCGAA | 2 cut(s) | 1012, 1090 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BpuMI | CCSGG | 2 cut(s) | 768, 769 |
| BsaI | GGTCTC | 2 cut(s) | 648, 1265 |
| BsaJI | CCNNGG | 2 cut(s) | 767, 1245 |
| BsaWI | WCCGGW | 1 cut(s) | 591 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 304, 334, 910, 940, 2332, 2362 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 360, 767, 1485, 1608, 2388 |
| Bse1I | ACTGG | 2 cut(s) | 354, 2382 |
| Bse3DI | GCAATG | 2 cut(s) | 672, 1137 |
| BseBI | CCWGG | 1 cut(s) | 930 |
| BseDI | CCNNGG | 2 cut(s) | 767, 1245 |
| BseGI | GGATG | 8 cut(s) | 169, 323, 541, 588, 1151, 1262, 1631, 2351 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 360, 767, 1485, 1608, 2388 |
| BseMI | GCAATG | 2 cut(s) | 672, 1137 |
| BseMII | CTCAG | 7 cut(s) | 423, 629, 659, 1088, 1193, 1403, 1689 |
| BseNI | ACTGG | 2 cut(s) | 354, 2382 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseSI | GKGCMC | 2 cut(s) | 946, 1410 |
| BseXI | GCAGC | 7 cut(s) | 310, 481, 502, 524, 1534, 2338, 2402 |
| BsgI | GTGCAG | 3 cut(s) | 168, 1314, 2196 |
| BshFI | GGCC | 2 cut(s) | 456, 1503 |
| BsiHKAI | GWGCWC | 3 cut(s) | 361, 1410, 2389 |
| BsiHKCI | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| BsiSI | CCGG | 3 cut(s) | 519, 592, 768 |
| BslFI | GGGAC | 5 cut(s) | 226, 750, 791, 1664, 2254 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 360, 767, 1485, 1608, 2388 |
| BsmAI | GTCTC | 5 cut(s) | 383, 648, 802, 1265, 1696 |
| BsmBI | CGTCTC | 1 cut(s) | 383 |
| BsmFI | GGGAC | 5 cut(s) | 226, 750, 791, 1664, 2254 |
| BsnI | GGCC | 2 cut(s) | 456, 1503 |
| Bso31I | GGTCTC | 2 cut(s) | 648, 1265 |
| BsoBI | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| Bsp119I | TTCGAA | 2 cut(s) | 1012, 1090 |
| Bsp1286I | GDGCHC | 4 cut(s) | 361, 946, 1410, 2389 |
| Bsp1407I | TGTACA | 1 cut(s) | 1494 |
| Bsp143I | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| BspACI | CCGC | 2 cut(s) | 327, 2355 |
| BspANI | GGCC | 2 cut(s) | 456, 1503 |
| BspCNI | CTCAG | 7 cut(s) | 424, 630, 658, 1087, 1192, 1402, 1688 |
| BspMAI | CTGCAG | 1 cut(s) | 1228 |
| BspMI | ACCTGC | 1 cut(s) | 1286 |
| BspPI | GGATC | 5 cut(s) | 372, 494, 642, 2400, 2415 |
| BspQI | GCTCTTC | 2 cut(s) | 202, 2230 |
| BspT104I | TTCGAA | 2 cut(s) | 1012, 1090 |
| BspTI | CTTAAG | 1 cut(s) | 629 |
| BspTNI | GGTCTC | 2 cut(s) | 648, 1265 |
| BsrDI | GCAATG | 2 cut(s) | 672, 1137 |
| BsrGI | TGTACA | 1 cut(s) | 1494 |
| BsrI | ACTGG | 2 cut(s) | 354, 2382 |
| BssECI | CCNNGG | 2 cut(s) | 767, 1245 |
| BssMI | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| BssSI | CACGAG | 3 cut(s) | 405, 498, 2419 |
| BssT1I | CCWWGG | 1 cut(s) | 1245 |
| Bst2BI | CACGAG | 3 cut(s) | 405, 498, 2419 |
| Bst2UI | CCWGG | 1 cut(s) | 930 |
| Bst4CI | ACNGT | 6 cut(s) | 61, 79, 189, 310, 2217, 2338 |
| Bst6I | CTCTTC | 3 cut(s) | 202, 1150, 2230 |
| BstAFI | CTTAAG | 1 cut(s) | 629 |
| BstAUI | TGTACA | 1 cut(s) | 1494 |
| BstBI | TTCGAA | 2 cut(s) | 1012, 1090 |
| BstC8I | GCNNGC | 2 cut(s) | 654, 964 |
| BstDEI | CTNAG | 9 cut(s) | 432, 638, 645, 938, 1074, 1179, 1389, 1658, 1675 |
| BstEII | GGTNACC | 2 cut(s) | 986, 1625 |
| BstF5I | GGATG | 8 cut(s) | 169, 323, 541, 588, 1151, 1262, 1631, 2351 |
| BstKTI | GATC | 9 cut(s) | 270, 286, 367, 489, 637, 2298, 2314, 2395, 2410 |
| BstMAI | GTCTC | 5 cut(s) | 383, 648, 802, 1265, 1696 |
| BstMBI | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 662, 710, 1292 |
| BstNI | CCWGG | 1 cut(s) | 930 |
| BstNSI | RCATGY | 1 cut(s) | 1139 |
| BstPI | GGTNACC | 2 cut(s) | 986, 1625 |
| BstSCI | CCNGG | 3 cut(s) | 766, 767, 928 |
| BstSFI | CTRYAG | 1 cut(s) | 1224 |
| BstSLI | GKGCMC | 2 cut(s) | 946, 1410 |
| BstV1I | GCAGC | 7 cut(s) | 310, 481, 502, 524, 1534, 2338, 2402 |
| BstX2I | RGATCY | 5 cut(s) | 267, 364, 634, 2295, 2392 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 974 |
| BstYI | RGATCY | 5 cut(s) | 267, 364, 634, 2295, 2392 |
| BsuRI | GGCC | 2 cut(s) | 456, 1503 |
| BtgZI | GCGATG | 1 cut(s) | 1598 |
| BtsCI | GGATG | 8 cut(s) | 169, 323, 541, 588, 1151, 1262, 1631, 2351 |
| BtsI | GCAGTG | 2 cut(s) | 1068, 1221 |
| BtsIMutI | CAGTG | 4 cut(s) | 361, 1068, 1221, 2389 |
| BveI | ACCTGC | 1 cut(s) | 1286 |
| Cac8I | GCNNGC | 2 cut(s) | 654, 964 |
| Cfr13I | GGNCC | 2 cut(s) | 455, 1501 |
| Cfr9I | CCCGGG | 1 cut(s) | 767 |
| Csp6I | GTAC | 2 cut(s) | 1495, 1595 |
| CviAII | CATG | 9 cut(s) | 108, 143, 281, 336, 706, 923, 1136, 2309, 2364 |
| CviQI | GTAC | 2 cut(s) | 1495, 1595 |
| DdeI | CTNAG | 9 cut(s) | 432, 638, 645, 938, 1074, 1179, 1389, 1658, 1675 |
| DpnI | GATC | 9 cut(s) | 269, 285, 366, 488, 636, 2297, 2313, 2394, 2409 |
| DpnII | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| Eam1104I | CTCTTC | 3 cut(s) | 202, 1150, 2230 |
| EarI | CTCTTC | 3 cut(s) | 202, 1150, 2230 |
| Eco130I | CCWWGG | 1 cut(s) | 1245 |
| Eco31I | GGTCTC | 2 cut(s) | 648, 1265 |
| Eco57I | CTGAAG | 2 cut(s) | 678, 797 |
| Eco88I | CYCGRG | 3 cut(s) | 360, 767, 2388 |
| Eco91I | GGTNACC | 2 cut(s) | 986, 1625 |
| EcoO109I | RGGNCCY | 1 cut(s) | 455 |
| EcoO65I | GGTNACC | 2 cut(s) | 986, 1625 |
| EcoRI | GAATTC | 1 cut(s) | 898 |
| EcoRII | CCWGG | 1 cut(s) | 928 |
| EcoT14I | CCWWGG | 1 cut(s) | 1245 |
| EcoT22I | ATGCAT | 5 cut(s) | 262, 282, 1137, 2290, 2310 |
| ErhI | CCWWGG | 1 cut(s) | 1245 |
| Esp3I | CGTCTC | 1 cut(s) | 383 |
| FaeI | CATG | 9 cut(s) | 111, 146, 284, 339, 709, 926, 1139, 2312, 2367 |
| FaqI | GGGAC | 5 cut(s) | 226, 750, 791, 1664, 2254 |
| FatI | CATG | 9 cut(s) | 107, 142, 280, 335, 705, 922, 1135, 2308, 2363 |
| Fnu4HI | GCNGC | 7 cut(s) | 299, 495, 513, 516, 1548, 2327, 2416 |
| FokI | GGATG | 8 cut(s) | 176, 310, 548, 575, 1138, 1249, 1618, 2338 |
| Fsp4HI | GCNGC | 7 cut(s) | 299, 495, 513, 516, 1548, 2327, 2416 |
| FspBI | CTAG | 4 cut(s) | 171, 1421, 1622, 2199 |
| GluI | GCNGC | 7 cut(s) | 299, 495, 513, 516, 1548, 2327, 2416 |
| GsuI | CTGGAG | 2 cut(s) | 249, 2277 |
| HaeIII | GGCC | 2 cut(s) | 456, 1503 |
| HapII | CCGG | 3 cut(s) | 519, 592, 768 |
| Hin1II | CATG | 9 cut(s) | 111, 146, 284, 339, 709, 926, 1139, 2312, 2367 |
| HindIII | AAGCTT | 2 cut(s) | 83, 1355 |
| HpaII | CCGG | 3 cut(s) | 519, 592, 768 |
| HphI | GGTGA | 8 cut(s) | 16, 85, 304, 768, 980, 1208, 1619, 2332 |
| Hpy166II | GTNNAC | 4 cut(s) | 1141, 1301, 1408, 1650 |
| Hpy188I | TCNGA | 9 cut(s) | 120, 217, 433, 639, 724, 1335, 1392, 1557, 2245 |
| Hpy8I | GTNNAC | 4 cut(s) | 1141, 1301, 1408, 1650 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 1 cut(s) | 131 |
| HpyCH4III | ACNGT | 6 cut(s) | 61, 79, 189, 310, 2217, 2338 |
| HpyCH4IV | ACGT | 1 cut(s) | 68 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 662, 710, 1292 |
| HpyF3I | CTNAG | 9 cut(s) | 432, 638, 645, 938, 1074, 1179, 1389, 1658, 1675 |
| HpySE526I | ACGT | 1 cut(s) | 68 |
| Hsp92II | CATG | 9 cut(s) | 111, 146, 284, 339, 709, 926, 1139, 2312, 2367 |
| Kzo9I | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| LguI | GCTCTTC | 2 cut(s) | 202, 2230 |
| LmnI | GCTCC | 2 cut(s) | 385, 931 |
| Lsp1109I | GCAGC | 7 cut(s) | 310, 481, 502, 524, 1534, 2338, 2402 |
| LweI | GCATC | 9 cut(s) | 111, 247, 267, 285, 1438, 1621, 2275, 2295, 2313 |
| MaeI | CTAG | 4 cut(s) | 171, 1421, 1622, 2199 |
| MaeII | ACGT | 1 cut(s) | 68 |
| MaeIII | GTNAC | 9 cut(s) | 4, 73, 310, 400, 435, 685, 986, 1625, 2338 |
| MalI | GATC | 9 cut(s) | 269, 285, 366, 488, 636, 2297, 2313, 2394, 2409 |
| MboI | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| MboII | GAAGA | 9 cut(s) | 189, 286, 671, 780, 1072, 1137, 1314, 2217, 2314 |
| MflI | RGATCY | 5 cut(s) | 267, 364, 634, 2295, 2392 |
| MhlI | GDGCHC | 4 cut(s) | 361, 946, 1410, 2389 |
| MmeI | TCCRAC | 2 cut(s) | 120, 974 |
| Mph1103I | ATGCAT | 5 cut(s) | 262, 282, 1137, 2290, 2310 |
| MseI | TTAA | 4 cut(s) | 561, 630, 1359, 1455 |
| MspA1I | CMGCKG | 3 cut(s) | 515, 683, 1547 |
| MspCI | CTTAAG | 1 cut(s) | 629 |
| MspI | CCGG | 3 cut(s) | 519, 592, 768 |
| MspR9I | CCNGG | 3 cut(s) | 768, 769, 930 |
| MvaI | CCWGG | 1 cut(s) | 930 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 662, 710, 1292 |
| NciI | CCSGG | 2 cut(s) | 768, 769 |
| NdeII | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| NlaIII | CATG | 9 cut(s) | 111, 146, 284, 339, 709, 926, 1139, 2312, 2367 |
| NmuCI | GTSAC | 6 cut(s) | 4, 73, 310, 986, 1625, 2338 |
| NsiI | ATGCAT | 5 cut(s) | 262, 282, 1137, 2290, 2310 |
| NspI | RCATGY | 1 cut(s) | 1139 |
| NspV | TTCGAA | 2 cut(s) | 1012, 1090 |
| PciSI | GCTCTTC | 2 cut(s) | 202, 2230 |
| PflFI | GACNNNGTC | 1 cut(s) | 1623 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1608 |
| PkrI | GCNGC | 7 cut(s) | 300, 496, 514, 517, 1549, 2328, 2417 |
| Psp6I | CCWGG | 1 cut(s) | 928 |
| PspEI | GGTNACC | 2 cut(s) | 986, 1625 |
| PspGI | CCWGG | 1 cut(s) | 928 |
| PspPI | GGNCC | 2 cut(s) | 455, 1501 |
| PstI | CTGCAG | 1 cut(s) | 1228 |
| PsuI | RGATCY | 5 cut(s) | 267, 364, 634, 2295, 2392 |
| PsyI | GACNNNGTC | 1 cut(s) | 1623 |
| PvuII | CAGCTG | 3 cut(s) | 515, 683, 1547 |
| RsaI | GTAC | 2 cut(s) | 1496, 1596 |
| RsaNI | GTAC | 2 cut(s) | 1495, 1595 |
| SapI | GCTCTTC | 2 cut(s) | 202, 2230 |
| SaqAI | TTAA | 4 cut(s) | 561, 630, 1359, 1455 |
| SatI | GCNGC | 7 cut(s) | 299, 495, 513, 516, 1548, 2327, 2416 |
| Sau3AI | GATC | 9 cut(s) | 267, 283, 364, 486, 634, 2295, 2311, 2392, 2407 |
| Sau96I | GGNCC | 2 cut(s) | 455, 1501 |
| ScrFI | CCNGG | 3 cut(s) | 768, 769, 930 |
| SduI | GDGCHC | 4 cut(s) | 361, 946, 1410, 2389 |
| SfaNI | GCATC | 9 cut(s) | 111, 247, 267, 285, 1438, 1621, 2275, 2295, 2313 |
| SfcI | CTRYAG | 1 cut(s) | 1224 |
| SfuI | TTCGAA | 2 cut(s) | 1012, 1090 |
| SmaI | CCCGGG | 1 cut(s) | 769 |
| SmlI | CTYRAG | 2 cut(s) | 380, 629 |
| SmoI | CTYRAG | 2 cut(s) | 380, 629 |
| SsiI | CCGC | 2 cut(s) | 327, 2355 |
| SspI | AATATT | 1 cut(s) | 1102 |
| SspMI | CTAG | 4 cut(s) | 171, 1421, 1622, 2199 |
| StyD4I | CCNGG | 3 cut(s) | 766, 767, 928 |
| StyI | CCWWGG | 1 cut(s) | 1245 |
| TaaI | ACNGT | 6 cut(s) | 61, 79, 189, 310, 2217, 2338 |
| TaiI | ACGT | 1 cut(s) | 71 |
| TaqI | TCGA | 9 cut(s) | 286, 531, 604, 610, 859, 889, 1012, 1090, 2314 |
| TatI | WGTACW | 2 cut(s) | 1494, 1594 |
| Tru1I | TTAA | 4 cut(s) | 561, 630, 1359, 1455 |
| Tru9I | TTAA | 4 cut(s) | 561, 630, 1359, 1455 |
| TscAI | CASTG | 4 cut(s) | 361, 1075, 1228, 2389 |
| TseFI | GTSAC | 6 cut(s) | 4, 73, 310, 986, 1625, 2338 |
| TseI | GCWGC | 7 cut(s) | 298, 494, 512, 515, 1547, 2326, 2415 |
| Tsp45I | GTSAC | 6 cut(s) | 4, 73, 310, 986, 1625, 2338 |
| TspDTI | ATGAA | 5 cut(s) | 324, 440, 515, 1164, 2352 |
| TspMI | CCCGGG | 1 cut(s) | 767 |
| TspRI | CASTG | 4 cut(s) | 361, 1075, 1228, 2389 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1623 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1608 |
| Vha464I | CTTAAG | 1 cut(s) | 629 |
| VneI | GTGCAC | 1 cut(s) | 1406 |
| XapI | RAATTY | 6 cut(s) | 866, 898, 980, 1348, 1393, 1413 |
| XbaI | TCTAGA | 1 cut(s) | 1420 |
| XceI | RCATGY | 1 cut(s) | 1139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1511 |
| XmaI | CCCGGG | 1 cut(s) | 767 |
| XspI | CTAG | 4 cut(s) | 171, 1421, 1622, 2199 |
| Zsp2I | ATGCAT | 5 cut(s) | 262, 282, 1137, 2290, 2310 |