gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 242 - 277 | 7.7e-06 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 575 |
| Acc36I | ACCTGC | 2 cut(s) | 342, 575 |
| AccB1I | GGYRCC | 1 cut(s) | 740 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 314 |
| AccI | GTMKAC | 1 cut(s) | 428 |
| AclWI | GGATC | 1 cut(s) | 299 |
| AfaI | GTAC | 2 cut(s) | 469, 852 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 314 |
| AgsI | TTSAA | 3 cut(s) | 358, 778, 815 |
| AhlI | ACTAGT | 1 cut(s) | 209 |
| AjnI | CCWGG | 2 cut(s) | 512, 655 |
| AluBI | AGCT | 1 cut(s) | 93 |
| AluI | AGCT | 1 cut(s) | 93 |
| Alw26I | GTCTC | 1 cut(s) | 218 |
| AlwI | GGATC | 1 cut(s) | 299 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 519 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 2 cut(s) | 29, 689 |
| AspS9I | GGNCC | 3 cut(s) | 510, 516, 674 |
| AsuC2I | CCSGG | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 3 cut(s) | 102, 108, 213 |
| AvaII | GGWCC | 2 cut(s) | 516, 674 |
| BanI | GGYRCC | 1 cut(s) | 740 |
| BbvI | GCAGC | 2 cut(s) | 16, 701 |
| BccI | CCATC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 2 cut(s) | 514, 657 |
| BciVI | GTATCC | 1 cut(s) | 549 |
| BcnI | CCSGG | 1 cut(s) | 180 |
| BcoDI | GTCTC | 1 cut(s) | 218 |
| BcuI | ACTAGT | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 210, 321 |
| BfmI | CTRYAG | 3 cut(s) | 258, 520, 604 |
| BfuAI | ACCTGC | 2 cut(s) | 342, 575 |
| BfuI | GTATCC | 1 cut(s) | 549 |
| BisI | GCNGC | 2 cut(s) | 30, 690 |
| BlsI | GCNGC | 2 cut(s) | 31, 691 |
| Bme1390I | CCNGG | 3 cut(s) | 180, 514, 657 |
| Bme18I | GGWCC | 2 cut(s) | 516, 674 |
| BmgT120I | GGNCC | 3 cut(s) | 510, 516, 674 |
| BmiI | GGNNCC | 3 cut(s) | 204, 511, 742 |
| BmrFI | CCNGG | 3 cut(s) | 180, 514, 657 |
| BmsI | GCATC | 1 cut(s) | 623 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 559 |
| BpuMI | CCSGG | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 178 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 454, 484 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 314 |
| Bse1I | ACTGG | 2 cut(s) | 469, 759 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 699 |
| BseBI | CCWGG | 2 cut(s) | 514, 657 |
| BseDI | CCNNGG | 1 cut(s) | 178 |
| BseGI | GGATG | 2 cut(s) | 97, 710 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 314 |
| BseMI | GCAATG | 2 cut(s) | 84, 699 |
| BseMII | CTCAG | 5 cut(s) | 212, 248, 731, 816, 852 |
| BseNI | ACTGG | 2 cut(s) | 469, 759 |
| BseRI | GAGGAG | 1 cut(s) | 462 |
| BseXI | GCAGC | 2 cut(s) | 16, 701 |
| BseYI | CCCAGC | 1 cut(s) | 836 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BshNI | GGYRCC | 1 cut(s) | 740 |
| BsiSI | CCGG | 1 cut(s) | 180 |
| BslFI | GGGAC | 2 cut(s) | 52, 443 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 314 |
| BsmAI | GTCTC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 2 cut(s) | 52, 443 |
| BsmI | GAATGC | 1 cut(s) | 326 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bsp1407I | TGTACA | 1 cut(s) | 850 |
| Bsp143I | GATC | 1 cut(s) | 304 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 5 cut(s) | 211, 247, 730, 815, 853 |
| BspLI | GGNNCC | 3 cut(s) | 204, 511, 742 |
| BspMAI | CTGCAG | 1 cut(s) | 608 |
| BspMI | ACCTGC | 2 cut(s) | 342, 575 |
| BspPI | GGATC | 1 cut(s) | 299 |
| BspT107I | GGYRCC | 1 cut(s) | 740 |
| BsrDI | GCAATG | 2 cut(s) | 84, 699 |
| BsrGI | TGTACA | 1 cut(s) | 850 |
| BsrI | ACTGG | 2 cut(s) | 469, 759 |
| BssECI | CCNNGG | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 304 |
| BssNAI | GTATAC | 1 cut(s) | 429 |
| Bst1107I | GTATAC | 1 cut(s) | 429 |
| Bst2UI | CCWGG | 2 cut(s) | 514, 657 |
| Bst4CI | ACNGT | 3 cut(s) | 114, 262, 811 |
| Bst6I | CTCTTC | 2 cut(s) | 382, 490 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 83, 332, 698 |
| BstAUI | TGTACA | 1 cut(s) | 850 |
| BstC8I | GCNNGC | 1 cut(s) | 729 |
| BstDEI | CTNAG | 5 cut(s) | 198, 234, 717, 802, 861 |
| BstF5I | GGATG | 2 cut(s) | 97, 710 |
| BstKTI | GATC | 1 cut(s) | 307 |
| BstMAI | GTCTC | 1 cut(s) | 218 |
| BstMBI | GATC | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 83, 332, 698 |
| BstNI | CCWGG | 2 cut(s) | 514, 657 |
| BstSCI | CCNGG | 3 cut(s) | 178, 512, 655 |
| BstSFI | CTRYAG | 3 cut(s) | 258, 520, 604 |
| BstV1I | GCAGC | 2 cut(s) | 16, 701 |
| BstZ17I | GTATAC | 1 cut(s) | 429 |
| BsuI | GTATCC | 1 cut(s) | 549 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BtsCI | GGATG | 2 cut(s) | 97, 710 |
| BtsI | GCAGTG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 3 cut(s) | 72, 267, 766 |
| BveI | ACCTGC | 2 cut(s) | 342, 575 |
| Cac8I | GCNNGC | 1 cut(s) | 729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 519 |
| Cfr13I | GGNCC | 3 cut(s) | 510, 516, 674 |
| Csp6I | GTAC | 2 cut(s) | 468, 851 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 364, 399 |
| CviAII | CATG | 1 cut(s) | 506 |
| CviJI | RGCY | 7 cut(s) | 29, 93, 203, 290, 512, 727, 860 |
| CviKI_1 | RGCY | 7 cut(s) | 29, 93, 203, 290, 512, 727, 860 |
| CviQI | GTAC | 2 cut(s) | 468, 851 |
| DdeI | CTNAG | 5 cut(s) | 198, 234, 717, 802, 861 |
| DpnI | GATC | 1 cut(s) | 306 |
| DpnII | GATC | 1 cut(s) | 304 |
| Eam1104I | CTCTTC | 2 cut(s) | 382, 490 |
| EarI | CTCTTC | 2 cut(s) | 382, 490 |
| Eco47I | GGWCC | 2 cut(s) | 516, 674 |
| EcoO109I | RGGNCCY | 2 cut(s) | 516, 674 |
| EcoRII | CCWGG | 2 cut(s) | 512, 655 |
| FaeI | CATG | 1 cut(s) | 509 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 756, 788 |
| FaqI | GGGAC | 2 cut(s) | 52, 443 |
| FatI | CATG | 1 cut(s) | 505 |
| FauNDI | CATATG | 2 cut(s) | 268, 753 |
| FblI | GTMKAC | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 690 |
| FokI | GGATG | 2 cut(s) | 84, 697 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 690 |
| FspBI | CTAG | 2 cut(s) | 210, 321 |
| GluI | GCNGC | 2 cut(s) | 30, 690 |
| GsaI | CCCAGC | 1 cut(s) | 840 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 1 cut(s) | 180 |
| Hin1II | CATG | 1 cut(s) | 509 |
| HincII | GTYRAC | 2 cut(s) | 407, 662 |
| HindII | GTYRAC | 2 cut(s) | 407, 662 |
| HinfI | GANTC | 3 cut(s) | 53, 616, 734 |
| HpaII | CCGG | 1 cut(s) | 180 |
| HphI | GGTGA | 3 cut(s) | 102, 108, 213 |
| Hpy166II | GTNNAC | 3 cut(s) | 407, 429, 662 |
| Hpy188I | TCNGA | 1 cut(s) | 805 |
| Hpy8I | GTNNAC | 3 cut(s) | 407, 429, 662 |
| HpyAV | CCTTC | 3 cut(s) | 156, 171, 687 |
| HpyCH4III | ACNGT | 3 cut(s) | 114, 262, 811 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 326, 584, 606, 689, 769 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 83, 332, 698 |
| HpyF3I | CTNAG | 5 cut(s) | 198, 234, 717, 802, 861 |
| Hsp92II | CATG | 1 cut(s) | 509 |
| Kzo9I | GATC | 1 cut(s) | 304 |
| LmnI | GCTCC | 3 cut(s) | 178, 208, 793 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 701 |
| LweI | GCATC | 1 cut(s) | 623 |
| MaeI | CTAG | 2 cut(s) | 210, 321 |
| MaeIII | GTNAC | 2 cut(s) | 108, 114 |
| MalI | GATC | 1 cut(s) | 306 |
| MboI | GATC | 1 cut(s) | 304 |
| MboII | GAAGA | 4 cut(s) | 399, 507, 621, 853 |
| MluCI | AATT | 3 cut(s) | 8, 36, 410 |
| MmeI | TCCRAC | 1 cut(s) | 332 |
| MseI | TTAA | 3 cut(s) | 11, 396, 531 |
| MslI | CAYNNNNRTG | 2 cut(s) | 77, 564 |
| MspI | CCGG | 1 cut(s) | 180 |
| MspR9I | CCNGG | 3 cut(s) | 180, 514, 657 |
| Mva1269I | GAATGC | 1 cut(s) | 326 |
| MvaI | CCWGG | 2 cut(s) | 514, 657 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 83, 332, 698 |
| NciI | CCSGG | 1 cut(s) | 180 |
| NdeI | CATATG | 2 cut(s) | 268, 753 |
| NdeII | GATC | 1 cut(s) | 304 |
| NlaIII | CATG | 1 cut(s) | 509 |
| NlaIV | GGNNCC | 3 cut(s) | 204, 511, 742 |
| NmuCI | GTSAC | 2 cut(s) | 108, 114 |
| PaqCI | CACCTGC | 1 cut(s) | 575 |
| PctI | GAATGC | 1 cut(s) | 326 |
| PfeI | GAWTC | 3 cut(s) | 53, 616, 734 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 314 |
| PkrI | GCNGC | 2 cut(s) | 31, 691 |
| PpuMI | RGGWCCY | 2 cut(s) | 516, 674 |
| Psp5II | RGGWCCY | 2 cut(s) | 516, 674 |
| Psp6I | CCWGG | 2 cut(s) | 512, 655 |
| PspFI | CCCAGC | 1 cut(s) | 836 |
| PspGI | CCWGG | 2 cut(s) | 512, 655 |
| PspN4I | GGNNCC | 3 cut(s) | 204, 511, 742 |
| PspPI | GGNCC | 3 cut(s) | 510, 516, 674 |
| PspPPI | RGGWCCY | 2 cut(s) | 516, 674 |
| PstI | CTGCAG | 1 cut(s) | 608 |
| PstNI | CAGNNNCTG | 1 cut(s) | 519 |
| RsaI | GTAC | 2 cut(s) | 469, 852 |
| RsaNI | GTAC | 2 cut(s) | 468, 851 |
| RseI | CAYNNNNRTG | 2 cut(s) | 77, 564 |
| SaqAI | TTAA | 3 cut(s) | 11, 396, 531 |
| SatI | GCNGC | 2 cut(s) | 30, 690 |
| Sau3AI | GATC | 1 cut(s) | 304 |
| Sau96I | GGNCC | 3 cut(s) | 510, 516, 674 |
| ScrFI | CCNGG | 3 cut(s) | 180, 514, 657 |
| SfaNI | GCATC | 1 cut(s) | 623 |
| SfcI | CTRYAG | 3 cut(s) | 258, 520, 604 |
| SinI | GGWCC | 2 cut(s) | 516, 674 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 77, 564 |
| SmlI | CTYRAG | 2 cut(s) | 23, 574 |
| SmoI | CTYRAG | 2 cut(s) | 23, 574 |
| SpeI | ACTAGT | 1 cut(s) | 209 |
| Sse9I | AATT | 3 cut(s) | 8, 36, 410 |
| SspI | AATATT | 3 cut(s) | 379, 784, 847 |
| SspMI | CTAG | 2 cut(s) | 210, 321 |
| StyD4I | CCNGG | 3 cut(s) | 178, 512, 655 |
| TaaI | ACNGT | 3 cut(s) | 114, 262, 811 |
| TasI | AATT | 3 cut(s) | 8, 36, 410 |
| TatI | WGTACW | 1 cut(s) | 850 |
| TfiI | GAWTC | 3 cut(s) | 53, 616, 734 |
| Tru1I | TTAA | 3 cut(s) | 11, 396, 531 |
| Tru9I | TTAA | 3 cut(s) | 11, 396, 531 |
| TscAI | CASTG | 3 cut(s) | 79, 267, 766 |
| TseFI | GTSAC | 2 cut(s) | 108, 114 |
| TseI | GCWGC | 2 cut(s) | 29, 689 |
| Tsp45I | GTSAC | 2 cut(s) | 108, 114 |
| TspDTI | ATGAA | 4 cut(s) | 66, 153, 285, 548 |
| TspRI | CASTG | 3 cut(s) | 79, 267, 766 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 314 |
| VpaK11BI | GGWCC | 2 cut(s) | 516, 674 |
| XmiI | GTMKAC | 1 cut(s) | 428 |
| XspI | CTAG | 2 cut(s) | 210, 321 |