ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 47 - 214 | 9.5e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 686 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AccII | CGCG | 1 cut(s) | 716 |
| AciI | CCGC | 2 cut(s) | 503, 574 |
| AclI | AACGTT | 1 cut(s) | 263 |
| AclWI | GGATC | 3 cut(s) | 254, 284, 399 |
| AcoI | YGGCCR | 1 cut(s) | 599 |
| AcsI | RAATTY | 3 cut(s) | 69, 530, 562 |
| AcuI | CTGAAG | 4 cut(s) | 27, 164, 228, 681 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 502 |
| AflIII | ACRYGT | 1 cut(s) | 156 |
| AgsI | TTSAA | 1 cut(s) | 285 |
| AluBI | AGCT | 4 cut(s) | 233, 326, 385, 476 |
| AluI | AGCT | 4 cut(s) | 233, 326, 385, 476 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 387 |
| Alw26I | GTCTC | 1 cut(s) | 380 |
| AlwI | GGATC | 3 cut(s) | 254, 284, 399 |
| Ama87I | CYCGRG | 2 cut(s) | 54, 615 |
| AoxI | GGCC | 3 cut(s) | 147, 493, 599 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| ApoI | RAATTY | 3 cut(s) | 69, 530, 562 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 666 |
| AvaI | CYCGRG | 2 cut(s) | 54, 615 |
| BanII | GRGCYC | 2 cut(s) | 328, 387 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 387 |
| BbvI | GCAGC | 1 cut(s) | 733 |
| BccI | CCATC | 2 cut(s) | 485, 596 |
| BcoDI | GTCTC | 1 cut(s) | 380 |
| BfaI | CTAG | 2 cut(s) | 305, 467 |
| BglII | AGATCT | 1 cut(s) | 163 |
| BisI | GCNGC | 2 cut(s) | 504, 747 |
| BlsI | GCNGC | 2 cut(s) | 505, 748 |
| BmeT110I | CYCGRG | 2 cut(s) | 54, 615 |
| BmiI | GGNNCC | 1 cut(s) | 453 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 2 cut(s) | 371, 401 |
| BsaJI | CCNNGG | 1 cut(s) | 99 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 502 |
| Bse1I | ACTGG | 1 cut(s) | 608 |
| BseDI | CCNNGG | 1 cut(s) | 99 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BseMII | CTCAG | 2 cut(s) | 150, 750 |
| BseNI | ACTGG | 1 cut(s) | 608 |
| BseXI | GCAGC | 1 cut(s) | 733 |
| Bsh1236I | CGCG | 1 cut(s) | 716 |
| BshFI | GGCC | 3 cut(s) | 149, 495, 601 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 387 |
| BsiHKCI | CYCGRG | 2 cut(s) | 54, 615 |
| BslFI | GGGAC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BsmAI | GTCTC | 1 cut(s) | 380 |
| BsmBI | CGTCTC | 1 cut(s) | 380 |
| BsmFI | GGGAC | 1 cut(s) | 269 |
| BsnI | GGCC | 3 cut(s) | 149, 495, 601 |
| BsoBI | CYCGRG | 2 cut(s) | 54, 615 |
| Bsp1286I | GDGCHC | 2 cut(s) | 328, 387 |
| Bsp143I | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| BspACI | CCGC | 2 cut(s) | 503, 574 |
| BspANI | GGCC | 3 cut(s) | 149, 495, 601 |
| BspCNI | CTCAG | 2 cut(s) | 149, 749 |
| BspFNI | CGCG | 1 cut(s) | 716 |
| BspLI | GGNNCC | 1 cut(s) | 453 |
| BspPI | GGATC | 3 cut(s) | 254, 284, 399 |
| BsrI | ACTGG | 1 cut(s) | 608 |
| BssECI | CCNNGG | 1 cut(s) | 99 |
| BssMI | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| BssT1I | CCWWGG | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 2 cut(s) | 117, 423 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 172, 204 |
| BstDEI | CTNAG | 3 cut(s) | 136, 641, 736 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstFNI | CGCG | 1 cut(s) | 716 |
| BstKTI | GATC | 5 cut(s) | 166, 249, 279, 394, 708 |
| BstMAI | GTCTC | 1 cut(s) | 380 |
| BstMBI | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNSI | RCATGY | 1 cut(s) | 160 |
| BstUI | CGCG | 1 cut(s) | 716 |
| BstV1I | GCAGC | 1 cut(s) | 733 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BsuRI | GGCC | 3 cut(s) | 149, 495, 601 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsI | GCAGTG | 1 cut(s) | 191 |
| BtsIMutI | CAGTG | 1 cut(s) | 191 |
| CseI | GACGC | 1 cut(s) | 709 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 183, 218 |
| CviAII | CATG | 1 cut(s) | 157 |
| DdeI | CTNAG | 3 cut(s) | 136, 641, 736 |
| DpnI | GATC | 5 cut(s) | 165, 248, 278, 393, 707 |
| DpnII | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| EaeI | YGGCCR | 1 cut(s) | 599 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 172, 204 |
| EarI | CTCTTC | 3 cut(s) | 3, 172, 204 |
| Ecl136II | GAGCTC | 2 cut(s) | 326, 385 |
| Eco130I | CCWWGG | 1 cut(s) | 99 |
| Eco147I | AGGCCT | 1 cut(s) | 149 |
| Eco24I | GRGCYC | 2 cut(s) | 328, 387 |
| Eco53kI | GAGCTC | 2 cut(s) | 326, 385 |
| Eco57I | CTGAAG | 4 cut(s) | 27, 164, 228, 681 |
| Eco88I | CYCGRG | 2 cut(s) | 54, 615 |
| EcoICRI | GAGCTC | 2 cut(s) | 326, 385 |
| EcoT14I | CCWWGG | 1 cut(s) | 99 |
| EcoT38I | GRGCYC | 2 cut(s) | 328, 387 |
| ErhI | CCWWGG | 1 cut(s) | 99 |
| Esp3I | CGTCTC | 1 cut(s) | 380 |
| FaeI | CATG | 1 cut(s) | 160 |
| FaqI | GGGAC | 1 cut(s) | 269 |
| FatI | CATG | 1 cut(s) | 156 |
| FauNDI | CATATG | 2 cut(s) | 413, 568 |
| Fnu4HI | GCNGC | 2 cut(s) | 504, 747 |
| FokI | GGATG | 1 cut(s) | 9 |
| FriOI | GRGCYC | 2 cut(s) | 328, 387 |
| Fsp4HI | GCNGC | 2 cut(s) | 504, 747 |
| FspBI | CTAG | 2 cut(s) | 305, 467 |
| GluI | GCNGC | 2 cut(s) | 504, 747 |
| HaeIII | GGCC | 3 cut(s) | 149, 495, 601 |
| HgaI | GACGC | 1 cut(s) | 709 |
| Hin1II | CATG | 1 cut(s) | 160 |
| HinfI | GANTC | 5 cut(s) | 11, 32, 309, 524, 676 |
| Hpy166II | GTNNAC | 2 cut(s) | 191, 320 |
| Hpy188I | TCNGA | 6 cut(s) | 144, 154, 427, 529, 593, 739 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 617 |
| Hpy8I | GTNNAC | 2 cut(s) | 191, 320 |
| Hpy99I | CGWCG | 1 cut(s) | 441 |
| HpyAV | CCTTC | 3 cut(s) | 139, 167, 451 |
| HpyCH4III | ACNGT | 2 cut(s) | 117, 423 |
| HpyCH4IV | ACGT | 3 cut(s) | 263, 439, 543 |
| HpyCH4V | TGCA | 3 cut(s) | 337, 365, 628 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 3 cut(s) | 136, 641, 736 |
| HpySE526I | ACGT | 3 cut(s) | 263, 439, 543 |
| Hsp92II | CATG | 1 cut(s) | 160 |
| Kzo9I | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| LmnI | GCTCC | 1 cut(s) | 451 |
| LpnPI | CCDG | 7 cut(s) | 39, 235, 243, 492, 528, 615, 621 |
| Lsp1109I | GCAGC | 1 cut(s) | 733 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 305, 467 |
| MaeII | ACGT | 3 cut(s) | 263, 439, 543 |
| MaeIII | GTNAC | 3 cut(s) | 12, 264, 610 |
| MalI | GATC | 5 cut(s) | 165, 248, 278, 393, 707 |
| MboI | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| MboII | GAAGA | 4 cut(s) | 20, 189, 221, 632 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 2 cut(s) | 328, 387 |
| MluCI | AATT | 9 cut(s) | 69, 106, 197, 241, 280, 530, 562, 623, 687 |
| MlyI | GAGTC | 2 cut(s) | 20, 26 |
| MmeI | TCCRAC | 2 cut(s) | 73, 115 |
| MnlI | CCTC | 5 cut(s) | 63, 160, 246, 506, 595 |
| MroXI | GAANNNNTTC | 1 cut(s) | 666 |
| MseI | TTAA | 1 cut(s) | 751 |
| MvnI | CGCG | 1 cut(s) | 716 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeI | CATATG | 2 cut(s) | 413, 568 |
| NdeII | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| NlaIII | CATG | 1 cut(s) | 160 |
| NlaIV | GGNNCC | 1 cut(s) | 453 |
| NmeAIII | GCCGAG | 1 cut(s) | 577 |
| NmuCI | GTSAC | 1 cut(s) | 12 |
| NspI | RCATGY | 1 cut(s) | 160 |
| PaeR7I | CTCGAG | 2 cut(s) | 54, 615 |
| PceI | AGGCCT | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 156 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 707 |
| PdmI | GAANNNNTTC | 1 cut(s) | 666 |
| PfeI | GAWTC | 3 cut(s) | 309, 524, 676 |
| PkrI | GCNGC | 2 cut(s) | 505, 748 |
| PleI | GAGTC | 2 cut(s) | 19, 26 |
| PpsI | GAGTC | 2 cut(s) | 19, 26 |
| PscI | ACATGT | 1 cut(s) | 156 |
| PsiI | TTATAA | 1 cut(s) | 686 |
| Psp124BI | GAGCTC | 2 cut(s) | 328, 387 |
| Psp1406I | AACGTT | 1 cut(s) | 263 |
| PspN4I | GGNNCC | 1 cut(s) | 453 |
| PspXI | VCTCGAGB | 1 cut(s) | 54 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| SacI | GAGCTC | 2 cut(s) | 328, 387 |
| SaqAI | TTAA | 1 cut(s) | 751 |
| SatI | GCNGC | 2 cut(s) | 504, 747 |
| Sau3AI | GATC | 5 cut(s) | 163, 246, 276, 391, 705 |
| SchI | GAGTC | 2 cut(s) | 20, 26 |
| SduI | GDGCHC | 2 cut(s) | 328, 387 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| Sfr274I | CTCGAG | 2 cut(s) | 54, 615 |
| SlaI | CTCGAG | 2 cut(s) | 54, 615 |
| SmlI | CTYRAG | 4 cut(s) | 54, 380, 386, 615 |
| SmoI | CTYRAG | 4 cut(s) | 54, 380, 386, 615 |
| Sse9I | AATT | 9 cut(s) | 69, 106, 197, 241, 280, 530, 562, 623, 687 |
| SseBI | AGGCCT | 1 cut(s) | 149 |
| SsiI | CCGC | 2 cut(s) | 503, 574 |
| SspMI | CTAG | 2 cut(s) | 305, 467 |
| SstI | GAGCTC | 2 cut(s) | 328, 387 |
| StuI | AGGCCT | 1 cut(s) | 149 |
| StyI | CCWWGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 2 cut(s) | 117, 423 |
| TaiI | ACGT | 3 cut(s) | 266, 442, 546 |
| TaqI | TCGA | 3 cut(s) | 55, 498, 616 |
| TasI | AATT | 9 cut(s) | 69, 106, 197, 241, 280, 530, 562, 623, 687 |
| TauI | GCSGC | 1 cut(s) | 506 |
| TfiI | GAWTC | 3 cut(s) | 309, 524, 676 |
| Tru1I | TTAA | 1 cut(s) | 751 |
| Tru9I | TTAA | 1 cut(s) | 751 |
| TscAI | CASTG | 1 cut(s) | 191 |
| TseFI | GTSAC | 1 cut(s) | 12 |
| TseI | GCWGC | 1 cut(s) | 746 |
| Tsp45I | GTSAC | 1 cut(s) | 12 |
| TspDTI | ATGAA | 3 cut(s) | 121, 555, 689 |
| TspRI | CASTG | 1 cut(s) | 191 |
| XapI | RAATTY | 3 cut(s) | 69, 530, 562 |
| XceI | RCATGY | 1 cut(s) | 160 |
| XhoI | CTCGAG | 2 cut(s) | 54, 615 |
| XmnI | GAANNNNTTC | 1 cut(s) | 666 |
| XspI | CTAG | 2 cut(s) | 305, 467 |