gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 364 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 615, 772, 1116 |
| AccI | GTMKAC | 1 cut(s) | 330 |
| AccII | CGCG | 1 cut(s) | 530 |
| AciI | CCGC | 6 cut(s) | 525, 528, 530, 679, 682, 1079 |
| AclWI | GGATC | 3 cut(s) | 240, 290, 541 |
| AfaI | GTAC | 1 cut(s) | 173 |
| AfeI | AGCGCT | 1 cut(s) | 782 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 496, 615, 684, 685, 772, 975, 976, 1116 |
| AflIII | ACRYGT | 2 cut(s) | 180, 299 |
| AgsI | TTSAA | 7 cut(s) | 187, 260, 452, 671, 741, 864, 993 |
| AjiI | CACGTC | 2 cut(s) | 427, 568 |
| AjnI | CCWGG | 3 cut(s) | 1109, 1115, 1124 |
| AluBI | AGCT | 8 cut(s) | 59, 92, 422, 436, 512, 882, 930, 1071 |
| AluI | AGCT | 8 cut(s) | 59, 92, 422, 436, 512, 882, 930, 1071 |
| Alw26I | GTCTC | 2 cut(s) | 39, 77 |
| AlwI | GGATC | 3 cut(s) | 240, 290, 541 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1116 |
| Ama87I | CYCGRG | 3 cut(s) | 87, 621, 639 |
| Aor51HI | AGCGCT | 1 cut(s) | 782 |
| AoxI | GGCC | 6 cut(s) | 673, 693, 701, 726, 1113, 1130 |
| ApeKI | GCWGC | 3 cut(s) | 208, 788, 1071 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 539, 571 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 782 |
| AspLEI | GCGC | 2 cut(s) | 365, 783 |
| AspS9I | GGNCC | 6 cut(s) | 292, 674, 693, 727, 763, 1113 |
| AsuC2I | CCSGG | 1 cut(s) | 761 |
| AsuHPI | GGTGA | 3 cut(s) | 34, 112, 638 |
| AvaI | CYCGRG | 3 cut(s) | 87, 621, 639 |
| AvaII | GGWCC | 2 cut(s) | 292, 763 |
| BanII | GRGCYC | 1 cut(s) | 622 |
| BbsI | GAAGAC | 2 cut(s) | 141, 510 |
| BbvI | GCAGC | 3 cut(s) | 220, 800, 1058 |
| BccI | CCATC | 6 cut(s) | 53, 58, 223, 592, 623, 847 |
| BciT130I | CCWGG | 3 cut(s) | 1111, 1117, 1126 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcnI | CCSGG | 1 cut(s) | 761 |
| BcoDI | GTCTC | 2 cut(s) | 39, 77 |
| BfaI | CTAG | 6 cut(s) | 38, 203, 326, 372, 491, 705 |
| BfmI | CTRYAG | 1 cut(s) | 431 |
| BfoI | RGCGCY | 1 cut(s) | 784 |
| BglII | AGATCT | 1 cut(s) | 246 |
| BisI | GCNGC | 6 cut(s) | 209, 525, 528, 682, 789, 1072 |
| BlsI | GCNGC | 6 cut(s) | 210, 526, 529, 683, 790, 1073 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme1390I | CCNGG | 4 cut(s) | 761, 1111, 1117, 1126 |
| Bme18I | GGWCC | 2 cut(s) | 292, 763 |
| BmeT110I | CYCGRG | 3 cut(s) | 87, 621, 639 |
| BmgBI | CACGTC | 2 cut(s) | 427, 568 |
| BmgT120I | GGNCC | 6 cut(s) | 292, 674, 693, 727, 763, 1113 |
| BmiI | GGNNCC | 1 cut(s) | 676 |
| BmrFI | CCNGG | 4 cut(s) | 761, 1111, 1117, 1126 |
| BmsI | GCATC | 1 cut(s) | 350 |
| BpiI | GAAGAC | 2 cut(s) | 141, 510 |
| BpuEI | CTTGAG | 1 cut(s) | 422 |
| BpuMI | CCSGG | 1 cut(s) | 761 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 5 cut(s) | 252, 528, 1109, 1110, 1124 |
| BsaWI | WCCGGW | 1 cut(s) | 409 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 496, 615, 684, 685, 772, 975, 976, 1116 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseBI | CCWGG | 3 cut(s) | 1111, 1117, 1126 |
| BseDI | CCNNGG | 5 cut(s) | 252, 528, 1109, 1110, 1124 |
| BseGI | GGATG | 5 cut(s) | 45, 156, 365, 477, 1030 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 496, 615, 684, 685, 772, 975, 976, 1116 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseRI | GAGGAG | 2 cut(s) | 509, 874 |
| BseXI | GCAGC | 3 cut(s) | 220, 800, 1058 |
| BseYI | CCCAGC | 2 cut(s) | 265, 684 |
| Bsh1236I | CGCG | 1 cut(s) | 530 |
| BshFI | GGCC | 6 cut(s) | 675, 695, 703, 728, 1115, 1132 |
| BsiHKCI | CYCGRG | 3 cut(s) | 87, 621, 639 |
| BsiSI | CCGG | 2 cut(s) | 410, 761 |
| BslFI | GGGAC | 3 cut(s) | 809, 988, 1092 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 496, 615, 684, 685, 772, 975, 976, 1116 |
| BsmAI | GTCTC | 2 cut(s) | 39, 77 |
| BsmFI | GGGAC | 3 cut(s) | 809, 988, 1092 |
| BsnI | GGCC | 6 cut(s) | 675, 695, 703, 728, 1115, 1132 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| BsoBI | CYCGRG | 3 cut(s) | 87, 621, 639 |
| Bsp1286I | GDGCHC | 1 cut(s) | 622 |
| Bsp143I | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| BspACI | CCGC | 6 cut(s) | 525, 528, 530, 679, 682, 1079 |
| BspANI | GGCC | 6 cut(s) | 675, 695, 703, 728, 1115, 1132 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspFNI | CGCG | 1 cut(s) | 530 |
| BspLI | GGNNCC | 1 cut(s) | 676 |
| BspPI | GGATC | 3 cut(s) | 240, 290, 541 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 5 cut(s) | 252, 528, 1109, 1110, 1124 |
| BssMI | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| Bst2UI | CCWGG | 3 cut(s) | 1111, 1117, 1126 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 355 |
| Bst6I | CTCTTC | 1 cut(s) | 232 |
| BstC8I | GCNNGC | 2 cut(s) | 654, 793 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstDSI | CCRYGG | 2 cut(s) | 252, 528 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 494 |
| BstF5I | GGATG | 5 cut(s) | 45, 156, 365, 477, 1030 |
| BstFNI | CGCG | 1 cut(s) | 530 |
| BstH2I | RGCGCY | 1 cut(s) | 784 |
| BstHHI | GCGC | 2 cut(s) | 365, 783 |
| BstKTI | GATC | 6 cut(s) | 235, 249, 285, 536, 565, 937 |
| BstMAI | GTCTC | 2 cut(s) | 39, 77 |
| BstMBI | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 413, 681 |
| BstNI | CCWGG | 3 cut(s) | 1111, 1117, 1126 |
| BstNSI | RCATGY | 2 cut(s) | 184, 303 |
| BstSCI | CCNGG | 4 cut(s) | 759, 1109, 1115, 1124 |
| BstSFI | CTRYAG | 1 cut(s) | 431 |
| BstUI | CGCG | 1 cut(s) | 530 |
| BstV1I | GCAGC | 3 cut(s) | 220, 800, 1058 |
| BstV2I | GAAGAC | 2 cut(s) | 141, 510 |
| BstX2I | RGATCY | 2 cut(s) | 246, 533 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 23 |
| BstYI | RGATCY | 2 cut(s) | 246, 533 |
| BsuRI | GGCC | 6 cut(s) | 675, 695, 703, 728, 1115, 1132 |
| BtgI | CCRYGG | 2 cut(s) | 252, 528 |
| BtrI | CACGTC | 2 cut(s) | 427, 568 |
| BtsCI | GGATG | 5 cut(s) | 45, 156, 365, 477, 1030 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 322 |
| Cac8I | GCNNGC | 2 cut(s) | 654, 793 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1116 |
| CfoI | GCGC | 2 cut(s) | 365, 783 |
| Cfr13I | GGNCC | 6 cut(s) | 292, 674, 693, 727, 763, 1113 |
| Cfr42I | CCGCGG | 1 cut(s) | 531 |
| Csp6I | GTAC | 1 cut(s) | 172 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 942, 977 |
| CviAII | CATG | 3 cut(s) | 181, 190, 300 |
| CviQI | GTAC | 1 cut(s) | 172 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 6 cut(s) | 234, 248, 284, 535, 564, 936 |
| DpnII | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| Eam1104I | CTCTTC | 1 cut(s) | 232 |
| EarI | CTCTTC | 1 cut(s) | 232 |
| Eco147I | AGGCCT | 2 cut(s) | 703, 1132 |
| Eco24I | GRGCYC | 1 cut(s) | 622 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco47I | GGWCC | 2 cut(s) | 292, 763 |
| Eco47III | AGCGCT | 1 cut(s) | 782 |
| Eco88I | CYCGRG | 3 cut(s) | 87, 621, 639 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 494 |
| EcoO109I | RGGNCCY | 2 cut(s) | 674, 1113 |
| EcoRII | CCWGG | 3 cut(s) | 1109, 1115, 1124 |
| EcoT38I | GRGCYC | 1 cut(s) | 622 |
| FaeI | CATG | 3 cut(s) | 184, 193, 303 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 973, 1005 |
| FaqI | GGGAC | 3 cut(s) | 809, 988, 1092 |
| FatI | CATG | 3 cut(s) | 180, 189, 299 |
| FauI | CCCGC | 2 cut(s) | 523, 686 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| FblI | GTMKAC | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 6 cut(s) | 209, 525, 528, 682, 789, 1072 |
| FokI | GGATG | 5 cut(s) | 32, 143, 372, 484, 1017 |
| FriOI | GRGCYC | 1 cut(s) | 622 |
| Fsp4HI | GCNGC | 6 cut(s) | 209, 525, 528, 682, 789, 1072 |
| FspBI | CTAG | 6 cut(s) | 38, 203, 326, 372, 491, 705 |
| FspI | TGCGCA | 1 cut(s) | 364 |
| GlaI | GCGC | 2 cut(s) | 364, 782 |
| GluI | GCNGC | 6 cut(s) | 209, 525, 528, 682, 789, 1072 |
| GsaI | CCCAGC | 2 cut(s) | 269, 688 |
| HaeII | RGCGCY | 1 cut(s) | 784 |
| HaeIII | GGCC | 6 cut(s) | 675, 695, 703, 728, 1115, 1132 |
| HapII | CCGG | 2 cut(s) | 410, 761 |
| HhaI | GCGC | 2 cut(s) | 365, 783 |
| Hin1II | CATG | 3 cut(s) | 184, 193, 303 |
| Hin6I | GCGC | 2 cut(s) | 363, 781 |
| HinP1I | GCGC | 2 cut(s) | 363, 781 |
| HindIII | AAGCTT | 1 cut(s) | 928 |
| HinfI | GANTC | 7 cut(s) | 11, 32, 332, 402, 637, 1105, 1120 |
| HpaII | CCGG | 2 cut(s) | 410, 761 |
| HphI | GGTGA | 3 cut(s) | 34, 112, 638 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 228, 1139 |
| Hpy188III | TCNNGA | 2 cut(s) | 286, 641 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyAV | CCTTC | 6 cut(s) | 163, 191, 283, 462, 870, 999 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 355 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 567 |
| HpyCH4V | TGCA | 2 cut(s) | 320, 652 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 413, 681 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| HpySE526I | ACGT | 2 cut(s) | 426, 567 |
| Hsp92II | CATG | 3 cut(s) | 184, 193, 303 |
| HspAI | GCGC | 2 cut(s) | 363, 781 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| KspI | CCGCGG | 1 cut(s) | 531 |
| Kzo9I | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| LmnI | GCTCC | 3 cut(s) | 64, 412, 887 |
| Lsp1109I | GCAGC | 3 cut(s) | 220, 800, 1058 |
| LweI | GCATC | 1 cut(s) | 350 |
| MaeI | CTAG | 6 cut(s) | 38, 203, 326, 372, 491, 705 |
| MaeII | ACGT | 2 cut(s) | 426, 567 |
| MaeIII | GTNAC | 3 cut(s) | 40, 347, 634 |
| MalI | GATC | 6 cut(s) | 234, 248, 284, 535, 564, 936 |
| MboI | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| MboII | GAAGA | 5 cut(s) | 20, 141, 249, 515, 656 |
| MflI | RGATCY | 2 cut(s) | 246, 533 |
| MhlI | GDGCHC | 1 cut(s) | 622 |
| MluCI | AATT | 5 cut(s) | 221, 589, 647, 736, 796 |
| MlyI | GAGTC | 6 cut(s) | 41, 326, 396, 631, 1114, 1114 |
| MmeI | TCCRAC | 1 cut(s) | 260 |
| MroXI | GAANNNNTTC | 1 cut(s) | 782 |
| MseI | TTAA | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 2 cut(s) | 530, 684 |
| MspI | CCGG | 2 cut(s) | 410, 761 |
| MspR9I | CCNGG | 4 cut(s) | 761, 1111, 1117, 1126 |
| MvaI | CCWGG | 3 cut(s) | 1111, 1117, 1126 |
| MvnI | CGCG | 1 cut(s) | 530 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 413, 681 |
| NciI | CCSGG | 1 cut(s) | 761 |
| NdeII | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| NlaIII | CATG | 3 cut(s) | 184, 193, 303 |
| NlaIV | GGNNCC | 1 cut(s) | 676 |
| NmuCI | GTSAC | 2 cut(s) | 40, 634 |
| NsbI | TGCGCA | 1 cut(s) | 364 |
| NspI | RCATGY | 2 cut(s) | 184, 303 |
| PaeR7I | CTCGAG | 2 cut(s) | 621, 639 |
| PasI | CCCWGGG | 1 cut(s) | 1110 |
| PceI | AGGCCT | 2 cut(s) | 703, 1132 |
| PciI | ACATGT | 2 cut(s) | 180, 299 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 549 |
| PdmI | GAANNNNTTC | 1 cut(s) | 782 |
| PfeI | GAWTC | 1 cut(s) | 11 |
| PflFI | GACNNNGTC | 1 cut(s) | 761 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 615, 772, 1116 |
| PkrI | GCNGC | 6 cut(s) | 210, 526, 529, 683, 790, 1073 |
| PleI | GAGTC | 6 cut(s) | 40, 326, 396, 631, 1113, 1114 |
| PpsI | GAGTC | 6 cut(s) | 40, 326, 396, 631, 1113, 1114 |
| PscI | ACATGT | 2 cut(s) | 180, 299 |
| Psp6I | CCWGG | 3 cut(s) | 1109, 1115, 1124 |
| PspFI | CCCAGC | 2 cut(s) | 265, 684 |
| PspGI | CCWGG | 3 cut(s) | 1109, 1115, 1124 |
| PspN4I | GGNNCC | 1 cut(s) | 676 |
| PspPI | GGNCC | 6 cut(s) | 292, 674, 693, 727, 763, 1113 |
| PspXI | VCTCGAGB | 1 cut(s) | 621 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1116 |
| PsuI | RGATCY | 2 cut(s) | 246, 533 |
| PsyI | GACNNNGTC | 1 cut(s) | 761 |
| RsaI | GTAC | 1 cut(s) | 173 |
| RsaNI | GTAC | 1 cut(s) | 172 |
| SacII | CCGCGG | 1 cut(s) | 531 |
| SaqAI | TTAA | 1 cut(s) | 1008 |
| SatI | GCNGC | 6 cut(s) | 209, 525, 528, 682, 789, 1072 |
| Sau3AI | GATC | 6 cut(s) | 232, 246, 282, 533, 562, 934 |
| Sau96I | GGNCC | 6 cut(s) | 292, 674, 693, 727, 763, 1113 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SchI | GAGTC | 6 cut(s) | 41, 326, 396, 631, 1114, 1114 |
| ScrFI | CCNGG | 4 cut(s) | 761, 1111, 1117, 1126 |
| SduI | GDGCHC | 1 cut(s) | 622 |
| SfaNI | GCATC | 1 cut(s) | 350 |
| SfcI | CTRYAG | 1 cut(s) | 431 |
| Sfr274I | CTCGAG | 2 cut(s) | 621, 639 |
| Sfr303I | CCGCGG | 1 cut(s) | 531 |
| SgrBI | CCGCGG | 1 cut(s) | 531 |
| SinI | GGWCC | 2 cut(s) | 292, 763 |
| SlaI | CTCGAG | 2 cut(s) | 621, 639 |
| SmlI | CTYRAG | 3 cut(s) | 437, 621, 639 |
| SmoI | CTYRAG | 3 cut(s) | 437, 621, 639 |
| Sse9I | AATT | 5 cut(s) | 221, 589, 647, 736, 796 |
| SseBI | AGGCCT | 2 cut(s) | 703, 1132 |
| SsiI | CCGC | 6 cut(s) | 525, 528, 530, 679, 682, 1079 |
| SspI | AATATT | 1 cut(s) | 717 |
| SspMI | CTAG | 6 cut(s) | 38, 203, 326, 372, 491, 705 |
| StuI | AGGCCT | 2 cut(s) | 703, 1132 |
| StyD4I | CCNGG | 4 cut(s) | 759, 1109, 1115, 1124 |
| TaaI | ACNGT | 2 cut(s) | 256, 355 |
| TaiI | ACGT | 2 cut(s) | 429, 570 |
| TaqI | TCGA | 7 cut(s) | 235, 275, 543, 622, 640, 892, 933 |
| TaqII | GACCGA | 1 cut(s) | 309 |
| TasI | AATT | 5 cut(s) | 221, 589, 647, 736, 796 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TauI | GCSGC | 3 cut(s) | 527, 530, 684 |
| TfiI | GAWTC | 1 cut(s) | 11 |
| Tru1I | TTAA | 1 cut(s) | 1008 |
| Tru9I | TTAA | 1 cut(s) | 1008 |
| TscAI | CASTG | 2 cut(s) | 85, 322 |
| TseFI | GTSAC | 2 cut(s) | 40, 634 |
| TseI | GCWGC | 3 cut(s) | 208, 788, 1071 |
| Tsp45I | GTSAC | 2 cut(s) | 40, 634 |
| TspDTI | ATGAA | 1 cut(s) | 145 |
| TspGWI | ACGGA | 2 cut(s) | 591, 990 |
| TspRI | CASTG | 2 cut(s) | 85, 322 |
| Tth111I | GACNNNGTC | 1 cut(s) | 761 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 615, 772, 1116 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 763 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 494 |
| XceI | RCATGY | 2 cut(s) | 184, 303 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 972 |
| XhoI | CTCGAG | 2 cut(s) | 621, 639 |
| XmiI | GTMKAC | 1 cut(s) | 330 |
| XmnI | GAANNNNTTC | 1 cut(s) | 782 |
| XspI | CTAG | 6 cut(s) | 38, 203, 326, 372, 491, 705 |
| ZrmI | AGTACT | 1 cut(s) | 173 |