gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 6 - 106 | 5e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 155 |
| AciI | CCGC | 1 cut(s) | 36 |
| AclWI | GGATC | 2 cut(s) | 23, 54 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| AluBI | AGCT | 4 cut(s) | 136, 148, 220, 287 |
| AluI | AGCT | 4 cut(s) | 136, 148, 220, 287 |
| Alw21I | GWGCWC | 2 cut(s) | 150, 289 |
| Alw26I | GTCTC | 1 cut(s) | 311 |
| AlwI | GGATC | 2 cut(s) | 23, 54 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AsuHPI | GGTGA | 2 cut(s) | 102, 155 |
| BanII | GRGCYC | 2 cut(s) | 150, 289 |
| BauI | CACGAG | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 2 cut(s) | 150, 289 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BccI | CCATC | 1 cut(s) | 6 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BcoDI | GTCTC | 1 cut(s) | 311 |
| BfaI | CTAG | 2 cut(s) | 72, 343 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BsaAI | YACGTR | 1 cut(s) | 140 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseGI | GGATG | 2 cut(s) | 17, 23 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseMII | CTCAG | 1 cut(s) | 302 |
| BseRI | GAGGAG | 1 cut(s) | 58 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 2 cut(s) | 150, 289 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BsmAI | GTCTC | 1 cut(s) | 311 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 2 cut(s) | 150, 289 |
| Bsp143I | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| BspACI | CCGC | 1 cut(s) | 36 |
| BspCNI | CTCAG | 1 cut(s) | 301 |
| BspPI | GGATC | 2 cut(s) | 23, 54 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BssMI | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| BssSI | CACGAG | 1 cut(s) | 162 |
| Bst2BI | CACGAG | 1 cut(s) | 162 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 1 cut(s) | 304 |
| BstBAI | YACGTR | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstF5I | GGATG | 2 cut(s) | 17, 23 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 5 cut(s) | 6, 18, 62, 217, 342 |
| BstMAI | GTCTC | 1 cut(s) | 311 |
| BstMBI | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BstX2I | RGATCY | 1 cut(s) | 59 |
| BstYI | RGATCY | 1 cut(s) | 59 |
| BtsCI | GGATG | 2 cut(s) | 17, 23 |
| Cac8I | GCNNGC | 1 cut(s) | 222 |
| CfoI | GCGC | 1 cut(s) | 156 |
| CviAII | CATG | 2 cut(s) | 151, 241 |
| CviJI | RGCY | 7 cut(s) | 136, 148, 220, 224, 230, 237, 287 |
| CviKI_1 | RGCY | 7 cut(s) | 136, 148, 220, 224, 230, 237, 287 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DpnI | GATC | 5 cut(s) | 5, 17, 61, 216, 341 |
| DpnII | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| Ecl136II | GAGCTC | 2 cut(s) | 148, 287 |
| Eco24I | GRGCYC | 2 cut(s) | 150, 289 |
| Eco53kI | GAGCTC | 2 cut(s) | 148, 287 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoICRI | GAGCTC | 2 cut(s) | 148, 287 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| EcoT38I | GRGCYC | 2 cut(s) | 150, 289 |
| FaeI | CATG | 2 cut(s) | 154, 244 |
| FaiI | YATR | 5 cut(s) | 105, 152, 242, 294, 335 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 2 cut(s) | 150, 240 |
| FauI | CCCGC | 1 cut(s) | 43 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 2 cut(s) | 10, 24 |
| FriOI | GRGCYC | 2 cut(s) | 150, 289 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspAI | RTGCGCAY | 1 cut(s) | 155 |
| FspBI | CTAG | 2 cut(s) | 72, 343 |
| FspI | TGCGCA | 1 cut(s) | 155 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 134 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 2 cut(s) | 154, 244 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HphI | GGTGA | 2 cut(s) | 102, 155 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 247 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 92 |
| HpyAV | CCTTC | 1 cut(s) | 242 |
| HpyCH4III | ACNGT | 1 cut(s) | 304 |
| HpyCH4IV | ACGT | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 133, 274 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| HpySE526I | ACGT | 1 cut(s) | 139 |
| Hsp92II | CATG | 2 cut(s) | 154, 244 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| Kzo9I | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| LmnI | GCTCC | 1 cut(s) | 284 |
| LpnPI | CCDG | 5 cut(s) | 67, 94, 206, 216, 327 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| MaeI | CTAG | 2 cut(s) | 72, 343 |
| MaeII | ACGT | 1 cut(s) | 139 |
| MalI | GATC | 5 cut(s) | 5, 17, 61, 216, 341 |
| MboI | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| MfeI | CAATTG | 1 cut(s) | 207 |
| MflI | RGATCY | 1 cut(s) | 59 |
| MhlI | GDGCHC | 2 cut(s) | 150, 289 |
| MluCI | AATT | 1 cut(s) | 207 |
| MmeI | TCCRAC | 1 cut(s) | 262 |
| MnlI | CCTC | 3 cut(s) | 38, 76, 79 |
| MspA1I | CMGCKG | 2 cut(s) | 38, 220 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MunI | CAATTG | 1 cut(s) | 207 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| NdeII | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| NlaIII | CATG | 2 cut(s) | 154, 244 |
| NsbI | TGCGCA | 1 cut(s) | 155 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| Ppu21I | YACGTR | 1 cut(s) | 140 |
| Psp124BI | GAGCTC | 2 cut(s) | 150, 289 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 59 |
| PvuII | CAGCTG | 1 cut(s) | 220 |
| SacI | GAGCTC | 2 cut(s) | 150, 289 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 5 cut(s) | 3, 15, 59, 214, 339 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SduI | GDGCHC | 2 cut(s) | 150, 289 |
| SetI | ASST | 7 cut(s) | 68, 83, 138, 142, 150, 222, 289 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| Sse9I | AATT | 1 cut(s) | 207 |
| SsiI | CCGC | 1 cut(s) | 36 |
| SspMI | CTAG | 2 cut(s) | 72, 343 |
| SstI | GAGCTC | 2 cut(s) | 150, 289 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| TaaI | ACNGT | 1 cut(s) | 304 |
| TaiI | ACGT | 1 cut(s) | 142 |
| TasI | AATT | 1 cut(s) | 207 |
| TseI | GCWGC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 1 cut(s) | 309 |
| XbaI | TCTAGA | 1 cut(s) | 71 |
| XspI | CTAG | 2 cut(s) | 72, 343 |