isoform X1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 72 | 1e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 155 |
| AccII | CGCG | 1 cut(s) | 75 |
| AclWI | GGATC | 1 cut(s) | 343 |
| AcsI | RAATTY | 1 cut(s) | 113 |
| AcuI | CTGAAG | 1 cut(s) | 307 |
| AflIII | ACRYGT | 1 cut(s) | 381 |
| AgsI | TTSAA | 1 cut(s) | 119 |
| AluBI | AGCT | 1 cut(s) | 199 |
| AluI | AGCT | 1 cut(s) | 199 |
| Alw26I | GTCTC | 1 cut(s) | 232 |
| AlwI | GGATC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 2 cut(s) | 50, 86 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 1 cut(s) | 118 |
| BbsI | GAAGAC | 2 cut(s) | 95, 313 |
| BbvI | GCAGC | 2 cut(s) | 37, 73 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 65, 99 |
| BcoDI | GTCTC | 1 cut(s) | 232 |
| BfmI | CTRYAG | 1 cut(s) | 315 |
| BglII | AGATCT | 1 cut(s) | 30 |
| BisI | GCNGC | 2 cut(s) | 51, 87 |
| BlsI | GCNGC | 2 cut(s) | 52, 88 |
| BmiI | GGNNCC | 1 cut(s) | 58 |
| BmsI | GCATC | 1 cut(s) | 273 |
| BpiI | GAAGAC | 2 cut(s) | 95, 313 |
| BpmI | CTGGAG | 2 cut(s) | 75, 360 |
| BsaAI | YACGTR | 1 cut(s) | 384 |
| BsaBI | GATNNNNATC | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 1 cut(s) | 250 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| Bse3DI | GCAATG | 1 cut(s) | 81 |
| Bse8I | GATNNNNATC | 1 cut(s) | 75 |
| BseDI | CCNNGG | 1 cut(s) | 250 |
| BseGI | GGATG | 2 cut(s) | 172, 288 |
| BseJI | GATNNNNATC | 1 cut(s) | 75 |
| BseMI | GCAATG | 1 cut(s) | 81 |
| BseXI | GCAGC | 2 cut(s) | 37, 73 |
| Bsh1236I | CGCG | 1 cut(s) | 75 |
| BsiSI | CCGG | 1 cut(s) | 352 |
| BsmAI | GTCTC | 1 cut(s) | 232 |
| Bsp143I | GATC | 4 cut(s) | 30, 70, 76, 348 |
| Bsp19I | CCATGG | 1 cut(s) | 250 |
| Bsp68I | TCGCGA | 1 cut(s) | 75 |
| BspFNI | CGCG | 1 cut(s) | 75 |
| BspLI | GGNNCC | 1 cut(s) | 58 |
| BspPI | GGATC | 1 cut(s) | 343 |
| BsrDI | GCAATG | 1 cut(s) | 81 |
| BssECI | CCNNGG | 1 cut(s) | 250 |
| BssMI | GATC | 4 cut(s) | 30, 70, 76, 348 |
| BssT1I | CCWWGG | 1 cut(s) | 250 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| Bst6I | CTCTTC | 1 cut(s) | 235 |
| BstBAI | YACGTR | 1 cut(s) | 384 |
| BstC8I | GCNNGC | 1 cut(s) | 182 |
| BstDSI | CCRYGG | 1 cut(s) | 250 |
| BstF5I | GGATG | 2 cut(s) | 172, 288 |
| BstFNI | CGCG | 1 cut(s) | 75 |
| BstKTI | GATC | 4 cut(s) | 33, 73, 79, 351 |
| BstMAI | GTCTC | 1 cut(s) | 232 |
| BstMBI | GATC | 4 cut(s) | 30, 70, 76, 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 95 |
| BstSFI | CTRYAG | 1 cut(s) | 315 |
| BstUI | CGCG | 1 cut(s) | 75 |
| BstV1I | GCAGC | 2 cut(s) | 37, 73 |
| BstV2I | GAAGAC | 2 cut(s) | 95, 313 |
| BstX2I | RGATCY | 1 cut(s) | 30 |
| BstYI | RGATCY | 1 cut(s) | 30 |
| BtgI | CCRYGG | 1 cut(s) | 250 |
| BtsCI | GGATG | 2 cut(s) | 172, 288 |
| BtsI | GCAGTG | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| BtuMI | TCGCGA | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 1 cut(s) | 182 |
| CviAII | CATG | 3 cut(s) | 139, 176, 251 |
| CviJI | RGCY | 6 cut(s) | 59, 98, 180, 199, 255, 314 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 98, 180, 199, 255, 314 |
| DpnI | GATC | 4 cut(s) | 32, 72, 78, 350 |
| DpnII | GATC | 4 cut(s) | 30, 70, 76, 348 |
| Eam1104I | CTCTTC | 1 cut(s) | 235 |
| EarI | CTCTTC | 1 cut(s) | 235 |
| Eco130I | CCWWGG | 1 cut(s) | 250 |
| Eco57I | CTGAAG | 1 cut(s) | 307 |
| EcoT14I | CCWWGG | 1 cut(s) | 250 |
| ErhI | CCWWGG | 1 cut(s) | 250 |
| FaeI | CATG | 3 cut(s) | 142, 179, 254 |
| FaiI | YATR | 6 cut(s) | 140, 177, 252, 266, 317, 371 |
| FatI | CATG | 3 cut(s) | 138, 175, 250 |
| FblI | GTMKAC | 1 cut(s) | 155 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 87 |
| FokI | GGATG | 2 cut(s) | 179, 295 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 87 |
| GluI | GCNGC | 2 cut(s) | 51, 87 |
| GsuI | CTGGAG | 2 cut(s) | 75, 360 |
| HapII | CCGG | 1 cut(s) | 352 |
| Hin1II | CATG | 3 cut(s) | 142, 179, 254 |
| HincII | GTYRAC | 1 cut(s) | 357 |
| HindII | GTYRAC | 1 cut(s) | 357 |
| HinfI | GANTC | 4 cut(s) | 38, 119, 131, 208 |
| HpaII | CCGG | 1 cut(s) | 352 |
| HphI | GGTGA | 1 cut(s) | 118 |
| Hpy166II | GTNNAC | 3 cut(s) | 156, 270, 357 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 37, 70, 207 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 107, 377 |
| Hpy8I | GTNNAC | 3 cut(s) | 156, 270, 357 |
| Hpy99I | CGWCG | 1 cut(s) | 216 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4IV | ACGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 1 cut(s) | 16 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 95 |
| HpySE526I | ACGT | 1 cut(s) | 383 |
| Hsp92II | CATG | 3 cut(s) | 142, 179, 254 |
| Kzo9I | GATC | 4 cut(s) | 30, 70, 76, 348 |
| LmnI | GCTCC | 2 cut(s) | 56, 189 |
| LpnPI | CCDG | 5 cut(s) | 39, 80, 84, 120, 365 |
| Lsp1109I | GCAGC | 2 cut(s) | 37, 73 |
| LweI | GCATC | 1 cut(s) | 273 |
| MaeII | ACGT | 1 cut(s) | 383 |
| MalI | GATC | 4 cut(s) | 32, 72, 78, 350 |
| MboI | GATC | 4 cut(s) | 30, 70, 76, 348 |
| MboII | GAAGA | 3 cut(s) | 95, 222, 313 |
| MflI | RGATCY | 1 cut(s) | 30 |
| MluCI | AATT | 3 cut(s) | 63, 113, 277 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MnlI | CCTC | 1 cut(s) | 70 |
| MseI | TTAA | 1 cut(s) | 257 |
| MspI | CCGG | 1 cut(s) | 352 |
| MvnI | CGCG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 95 |
| NcoI | CCATGG | 1 cut(s) | 250 |
| NdeII | GATC | 4 cut(s) | 30, 70, 76, 348 |
| NlaIII | CATG | 3 cut(s) | 142, 179, 254 |
| NlaIV | GGNNCC | 1 cut(s) | 58 |
| NruI | TCGCGA | 1 cut(s) | 75 |
| PfeI | GAWTC | 3 cut(s) | 38, 119, 208 |
| PkrI | GCNGC | 2 cut(s) | 52, 88 |
| PleI | GAGTC | 1 cut(s) | 125 |
| PpsI | GAGTC | 1 cut(s) | 125 |
| Ppu21I | YACGTR | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 1 cut(s) | 58 |
| PsuI | RGATCY | 1 cut(s) | 30 |
| RruI | TCGCGA | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 257 |
| SatI | GCNGC | 2 cut(s) | 51, 87 |
| Sau3AI | GATC | 4 cut(s) | 30, 70, 76, 348 |
| SchI | GAGTC | 1 cut(s) | 125 |
| SetI | ASST | 4 cut(s) | 201, 264, 336, 386 |
| SfaNI | GCATC | 1 cut(s) | 273 |
| SfcI | CTRYAG | 1 cut(s) | 315 |
| Sse9I | AATT | 3 cut(s) | 63, 113, 277 |
| StyI | CCWWGG | 1 cut(s) | 250 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaiI | ACGT | 1 cut(s) | 386 |
| TasI | AATT | 3 cut(s) | 63, 113, 277 |
| TfiI | GAWTC | 3 cut(s) | 38, 119, 208 |
| Tru1I | TTAA | 1 cut(s) | 257 |
| Tru9I | TTAA | 1 cut(s) | 257 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseI | GCWGC | 2 cut(s) | 50, 86 |
| TspDTI | ATGAA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 52 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XmiI | GTMKAC | 1 cut(s) | 155 |