gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 14 - 125 | 7.9e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 857 |
| AccI | GTMKAC | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfaI | GTAC | 1 cut(s) | 489 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 695, 836 |
| AflII | CTTAAG | 1 cut(s) | 125 |
| AgsI | TTSAA | 6 cut(s) | 102, 140, 212, 444, 511, 610 |
| AjnI | CCWGG | 4 cut(s) | 177, 502, 688, 829 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 621, 653 |
| AluBI | AGCT | 4 cut(s) | 124, 337, 356, 842 |
| AluI | AGCT | 4 cut(s) | 124, 337, 356, 842 |
| Alw21I | GWGCWC | 2 cut(s) | 339, 844 |
| Alw26I | GTCTC | 5 cut(s) | 89, 164, 387, 670, 867 |
| AoxI | GGCC | 3 cut(s) | 7, 142, 697 |
| ApeKI | GCWGC | 4 cut(s) | 95, 121, 194, 356 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 36 |
| AspS9I | GGNCC | 4 cut(s) | 72, 686, 698, 846 |
| AsuC2I | CCSGG | 1 cut(s) | 305 |
| AsuHPI | GGTGA | 2 cut(s) | 516, 770 |
| AvaII | GGWCC | 3 cut(s) | 72, 686, 846 |
| BanII | GRGCYC | 3 cut(s) | 310, 339, 844 |
| BbsI | GAAGAC | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 2 cut(s) | 339, 844 |
| BbvI | GCAGC | 4 cut(s) | 82, 133, 181, 343 |
| BccI | CCATC | 4 cut(s) | 280, 478, 553, 584 |
| BciT130I | CCWGG | 4 cut(s) | 179, 504, 690, 831 |
| BcnI | CCSGG | 1 cut(s) | 305 |
| BcoDI | GTCTC | 5 cut(s) | 89, 164, 387, 670, 867 |
| BfaI | CTAG | 2 cut(s) | 5, 198 |
| BfmI | CTRYAG | 1 cut(s) | 483 |
| BfrI | CTTAAG | 1 cut(s) | 125 |
| BfuAI | ACCTGC | 1 cut(s) | 857 |
| BisI | GCNGC | 4 cut(s) | 96, 122, 195, 357 |
| BlsI | GCNGC | 4 cut(s) | 97, 123, 196, 358 |
| Bme1390I | CCNGG | 5 cut(s) | 179, 305, 504, 690, 831 |
| Bme18I | GGWCC | 3 cut(s) | 72, 686, 846 |
| BmgT120I | GGNCC | 4 cut(s) | 72, 686, 698, 846 |
| BmrFI | CCNGG | 5 cut(s) | 179, 305, 504, 690, 831 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpiI | GAAGAC | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 131 |
| BpuMI | CCSGG | 1 cut(s) | 305 |
| BsaWI | WCCGGW | 1 cut(s) | 647 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 484, 514, 667, 697 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 695, 836 |
| Bse1I | ACTGG | 1 cut(s) | 715 |
| BseBI | CCWGG | 4 cut(s) | 179, 504, 690, 831 |
| BseGI | GGATG | 4 cut(s) | 300, 545, 576, 648 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 695, 836 |
| BseNI | ACTGG | 1 cut(s) | 715 |
| BseXI | GCAGC | 4 cut(s) | 82, 133, 181, 343 |
| BshFI | GGCC | 3 cut(s) | 9, 144, 699 |
| BsiHKAI | GWGCWC | 2 cut(s) | 339, 844 |
| BsiSI | CCGG | 2 cut(s) | 304, 648 |
| BslFI | GGGAC | 2 cut(s) | 6, 572 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 695, 836 |
| BsmAI | GTCTC | 5 cut(s) | 89, 164, 387, 670, 867 |
| BsmBI | CGTCTC | 1 cut(s) | 89 |
| BsmFI | GGGAC | 2 cut(s) | 6, 572 |
| BsnI | GGCC | 3 cut(s) | 9, 144, 699 |
| Bsp1286I | GDGCHC | 3 cut(s) | 310, 339, 844 |
| Bsp143I | GATC | 1 cut(s) | 186 |
| BspANI | GGCC | 3 cut(s) | 9, 144, 699 |
| BspHI | TCATGA | 1 cut(s) | 61 |
| BspMI | ACCTGC | 1 cut(s) | 857 |
| BspTI | CTTAAG | 1 cut(s) | 125 |
| BsrI | ACTGG | 1 cut(s) | 715 |
| BssMI | GATC | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 4 cut(s) | 179, 504, 690, 831 |
| Bst4CI | ACNGT | 4 cut(s) | 217, 256, 298, 487 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstAFI | CTTAAG | 1 cut(s) | 125 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 693 |
| BstF5I | GGATG | 4 cut(s) | 300, 545, 576, 648 |
| BstKTI | GATC | 1 cut(s) | 189 |
| BstMAI | GTCTC | 5 cut(s) | 89, 164, 387, 670, 867 |
| BstMBI | GATC | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 203, 410 |
| BstNI | CCWGG | 4 cut(s) | 179, 504, 690, 831 |
| BstSCI | CCNGG | 5 cut(s) | 177, 303, 502, 688, 829 |
| BstSFI | CTRYAG | 1 cut(s) | 483 |
| BstV1I | GCAGC | 4 cut(s) | 82, 133, 181, 343 |
| BstV2I | GAAGAC | 1 cut(s) | 246 |
| BsuRI | GGCC | 3 cut(s) | 9, 144, 699 |
| BtsCI | GGATG | 4 cut(s) | 300, 545, 576, 648 |
| BveI | ACCTGC | 1 cut(s) | 857 |
| CciI | TCATGA | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 4 cut(s) | 72, 686, 698, 846 |
| CsiI | ACCWGGT | 2 cut(s) | 688, 829 |
| Csp6I | GTAC | 1 cut(s) | 488 |
| CviAII | CATG | 4 cut(s) | 62, 622, 626, 836 |
| CviQI | GTAC | 1 cut(s) | 488 |
| DpnI | GATC | 1 cut(s) | 188 |
| DpnII | GATC | 1 cut(s) | 186 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| Ecl136II | GAGCTC | 2 cut(s) | 337, 842 |
| Eco147I | AGGCCT | 1 cut(s) | 144 |
| Eco24I | GRGCYC | 3 cut(s) | 310, 339, 844 |
| Eco47I | GGWCC | 3 cut(s) | 72, 686, 846 |
| Eco53kI | GAGCTC | 2 cut(s) | 337, 842 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| EcoICRI | GAGCTC | 2 cut(s) | 337, 842 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 693 |
| EcoO109I | RGGNCCY | 1 cut(s) | 698 |
| EcoRII | CCWGG | 4 cut(s) | 177, 502, 688, 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 627 |
| EcoT38I | GRGCYC | 3 cut(s) | 310, 339, 844 |
| Esp3I | CGTCTC | 1 cut(s) | 89 |
| FaeI | CATG | 4 cut(s) | 65, 625, 629, 839 |
| FaqI | GGGAC | 2 cut(s) | 6, 572 |
| FatI | CATG | 4 cut(s) | 61, 621, 625, 835 |
| FblI | GTMKAC | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 4 cut(s) | 96, 122, 195, 357 |
| FokI | GGATG | 4 cut(s) | 287, 532, 563, 655 |
| FriOI | GRGCYC | 3 cut(s) | 310, 339, 844 |
| Fsp4HI | GCNGC | 4 cut(s) | 96, 122, 195, 357 |
| FspBI | CTAG | 2 cut(s) | 5, 198 |
| GluI | GCNGC | 4 cut(s) | 96, 122, 195, 357 |
| HaeIII | GGCC | 3 cut(s) | 9, 144, 699 |
| HapII | CCGG | 2 cut(s) | 304, 648 |
| Hin1II | CATG | 4 cut(s) | 65, 625, 629, 839 |
| HinfI | GANTC | 5 cut(s) | 19, 380, 629, 651, 732 |
| HpaII | CCGG | 2 cut(s) | 304, 648 |
| HphI | GGTGA | 2 cut(s) | 516, 770 |
| Hpy166II | GTNNAC | 3 cut(s) | 132, 367, 686 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 277, 846 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 148, 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 132, 367, 686 |
| HpyAV | CCTTC | 1 cut(s) | 450 |
| HpyCH4III | ACNGT | 4 cut(s) | 217, 256, 298, 487 |
| HpyCH4V | TGCA | 5 cut(s) | 121, 413, 625, 767, 852 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 203, 410 |
| Hsp92II | CATG | 4 cut(s) | 65, 625, 629, 839 |
| Kzo9I | GATC | 1 cut(s) | 186 |
| LmnI | GCTCC | 2 cut(s) | 334, 839 |
| Lsp1109I | GCAGC | 4 cut(s) | 82, 133, 181, 343 |
| LweI | GCATC | 1 cut(s) | 193 |
| MabI | ACCWGGT | 2 cut(s) | 688, 829 |
| MaeI | CTAG | 2 cut(s) | 5, 198 |
| MaeIII | GTNAC | 2 cut(s) | 250, 391 |
| MalI | GATC | 1 cut(s) | 188 |
| MboI | GATC | 1 cut(s) | 186 |
| MboII | GAAGA | 4 cut(s) | 71, 128, 251, 411 |
| MfeI | CAATTG | 1 cut(s) | 815 |
| MhlI | GDGCHC | 3 cut(s) | 310, 339, 844 |
| MluCI | AATT | 3 cut(s) | 278, 311, 815 |
| MlyI | GAGTC | 2 cut(s) | 28, 389 |
| MmeI | TCCRAC | 1 cut(s) | 801 |
| Mph1103I | ATGCAT | 1 cut(s) | 627 |
| MseI | TTAA | 2 cut(s) | 126, 291 |
| MspCI | CTTAAG | 1 cut(s) | 125 |
| MspI | CCGG | 2 cut(s) | 304, 648 |
| MspR9I | CCNGG | 5 cut(s) | 179, 305, 504, 690, 831 |
| MunI | CAATTG | 1 cut(s) | 815 |
| MvaI | CCWGG | 4 cut(s) | 179, 504, 690, 831 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 203, 410 |
| NciI | CCSGG | 1 cut(s) | 305 |
| NdeII | GATC | 1 cut(s) | 186 |
| NlaIII | CATG | 4 cut(s) | 65, 625, 629, 839 |
| NmuCI | GTSAC | 1 cut(s) | 391 |
| NsiI | ATGCAT | 1 cut(s) | 627 |
| PagI | TCATGA | 1 cut(s) | 61 |
| PceI | AGGCCT | 1 cut(s) | 144 |
| PfeI | GAWTC | 3 cut(s) | 629, 651, 732 |
| PflFI | GACNNNGTC | 2 cut(s) | 690, 859 |
| PkrI | GCNGC | 4 cut(s) | 97, 123, 196, 358 |
| PleI | GAGTC | 2 cut(s) | 27, 388 |
| PpsI | GAGTC | 2 cut(s) | 27, 388 |
| Psp124BI | GAGCTC | 2 cut(s) | 339, 844 |
| Psp6I | CCWGG | 4 cut(s) | 177, 502, 688, 829 |
| PspGI | CCWGG | 4 cut(s) | 177, 502, 688, 829 |
| PspPI | GGNCC | 4 cut(s) | 72, 686, 698, 846 |
| PsyI | GACNNNGTC | 2 cut(s) | 690, 859 |
| RsaI | GTAC | 1 cut(s) | 489 |
| RsaNI | GTAC | 1 cut(s) | 488 |
| SacI | GAGCTC | 2 cut(s) | 339, 844 |
| SaqAI | TTAA | 2 cut(s) | 126, 291 |
| SatI | GCNGC | 4 cut(s) | 96, 122, 195, 357 |
| Sau3AI | GATC | 1 cut(s) | 186 |
| Sau96I | GGNCC | 4 cut(s) | 72, 686, 698, 846 |
| SchI | GAGTC | 2 cut(s) | 28, 389 |
| ScrFI | CCNGG | 5 cut(s) | 179, 305, 504, 690, 831 |
| SduI | GDGCHC | 3 cut(s) | 310, 339, 844 |
| SexAI | ACCWGGT | 2 cut(s) | 688, 829 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SfcI | CTRYAG | 1 cut(s) | 483 |
| SinI | GGWCC | 3 cut(s) | 72, 686, 846 |
| SmlI | CTYRAG | 3 cut(s) | 86, 125, 146 |
| SmoI | CTYRAG | 3 cut(s) | 86, 125, 146 |
| Sse9I | AATT | 3 cut(s) | 278, 311, 815 |
| SseBI | AGGCCT | 1 cut(s) | 144 |
| SspI | AATATT | 1 cut(s) | 166 |
| SspMI | CTAG | 2 cut(s) | 5, 198 |
| SstI | GAGCTC | 2 cut(s) | 339, 844 |
| StuI | AGGCCT | 1 cut(s) | 144 |
| StyD4I | CCNGG | 5 cut(s) | 177, 303, 502, 688, 829 |
| TaaI | ACNGT | 4 cut(s) | 217, 256, 298, 487 |
| TaqI | TCGA | 1 cut(s) | 694 |
| TasI | AATT | 3 cut(s) | 278, 311, 815 |
| TfiI | GAWTC | 3 cut(s) | 629, 651, 732 |
| Tru1I | TTAA | 2 cut(s) | 126, 291 |
| Tru9I | TTAA | 2 cut(s) | 126, 291 |
| TseFI | GTSAC | 1 cut(s) | 391 |
| TseI | GCWGC | 4 cut(s) | 95, 121, 194, 356 |
| Tsp45I | GTSAC | 1 cut(s) | 391 |
| TspDTI | ATGAA | 2 cut(s) | 252, 642 |
| Tth111I | GACNNNGTC | 2 cut(s) | 690, 859 |
| Vha464I | CTTAAG | 1 cut(s) | 125 |
| VpaK11BI | GGWCC | 3 cut(s) | 72, 686, 846 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 693 |
| XapI | RAATTY | 1 cut(s) | 278 |
| XmiI | GTMKAC | 1 cut(s) | 131 |
| XspI | CTAG | 2 cut(s) | 5, 198 |
| Zsp2I | ATGCAT | 1 cut(s) | 627 |