gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 107 |
| AccB1I | GGYRCC | 1 cut(s) | 155 |
| AccII | CGCG | 2 cut(s) | 214, 419 |
| AclWI | GGATC | 3 cut(s) | 28, 243, 256 |
| AcsI | RAATTY | 1 cut(s) | 286 |
| AcuI | CTGAAG | 1 cut(s) | 45 |
| AfaI | GTAC | 2 cut(s) | 97, 230 |
| AgsI | TTSAA | 5 cut(s) | 85, 191, 235, 295, 405 |
| AluBI | AGCT | 3 cut(s) | 29, 307, 450 |
| AluI | AGCT | 3 cut(s) | 29, 307, 450 |
| Alw26I | GTCTC | 1 cut(s) | 130 |
| AlwI | GGATC | 3 cut(s) | 28, 243, 256 |
| ApeKI | GCWGC | 3 cut(s) | 203, 325, 328 |
| ApoI | RAATTY | 1 cut(s) | 286 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 290 |
| AspLEI | GCGC | 2 cut(s) | 216, 245 |
| BamHI | GGATCC | 1 cut(s) | 248 |
| BanI | GGYRCC | 1 cut(s) | 155 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| BbvI | GCAGC | 3 cut(s) | 190, 312, 315 |
| BccI | CCATC | 3 cut(s) | 11, 143, 286 |
| BceAI | ACGGC | 1 cut(s) | 180 |
| BciVI | GTATCC | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 130 |
| BfmI | CTRYAG | 1 cut(s) | 100 |
| BfoI | RGCGCY | 1 cut(s) | 246 |
| BfuAI | ACCTGC | 1 cut(s) | 107 |
| BfuI | GTATCC | 1 cut(s) | 342 |
| BisI | GCNGC | 3 cut(s) | 204, 326, 329 |
| BlsI | GCNGC | 3 cut(s) | 205, 327, 330 |
| BmiI | GGNNCC | 2 cut(s) | 157, 250 |
| BpmI | CTGGAG | 1 cut(s) | 21 |
| BpuEI | CTTGAG | 2 cut(s) | 39, 223 |
| BsaBI | GATNNNNATC | 1 cut(s) | 353 |
| Bse118I | RCCGGY | 1 cut(s) | 331 |
| Bse1I | ACTGG | 2 cut(s) | 38, 433 |
| Bse8I | GATNNNNATC | 1 cut(s) | 353 |
| BseGI | GGATG | 2 cut(s) | 22, 135 |
| BseJI | GATNNNNATC | 1 cut(s) | 353 |
| BseNI | ACTGG | 2 cut(s) | 38, 433 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseXI | GCAGC | 3 cut(s) | 190, 312, 315 |
| Bsh1236I | CGCG | 2 cut(s) | 214, 419 |
| BshNI | GGYRCC | 1 cut(s) | 155 |
| BsiSI | CCGG | 2 cut(s) | 246, 332 |
| BsmAI | GTCTC | 1 cut(s) | 130 |
| BsmBI | CGTCTC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp143I | GATC | 3 cut(s) | 20, 248, 354 |
| BspFNI | CGCG | 2 cut(s) | 214, 419 |
| BspLI | GGNNCC | 2 cut(s) | 157, 250 |
| BspMAI | CTGCAG | 1 cut(s) | 104 |
| BspMI | ACCTGC | 1 cut(s) | 107 |
| BspPI | GGATC | 3 cut(s) | 28, 243, 256 |
| BspT107I | GGYRCC | 1 cut(s) | 155 |
| BsrFI | RCCGGY | 1 cut(s) | 331 |
| BsrI | ACTGG | 2 cut(s) | 38, 433 |
| BssAI | RCCGGY | 1 cut(s) | 331 |
| BssMI | GATC | 3 cut(s) | 20, 248, 354 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 2 cut(s) | 169, 333 |
| BstF5I | GGATG | 2 cut(s) | 22, 135 |
| BstFNI | CGCG | 2 cut(s) | 214, 419 |
| BstH2I | RGCGCY | 1 cut(s) | 246 |
| BstHHI | GCGC | 2 cut(s) | 216, 245 |
| BstKTI | GATC | 3 cut(s) | 23, 251, 357 |
| BstMAI | GTCTC | 1 cut(s) | 130 |
| BstMBI | GATC | 3 cut(s) | 20, 248, 354 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 164, 325 |
| BstSFI | CTRYAG | 1 cut(s) | 100 |
| BstUI | CGCG | 2 cut(s) | 214, 419 |
| BstV1I | GCAGC | 3 cut(s) | 190, 312, 315 |
| BstX2I | RGATCY | 2 cut(s) | 20, 248 |
| BstYI | RGATCY | 2 cut(s) | 20, 248 |
| BsuI | GTATCC | 1 cut(s) | 342 |
| BtsCI | GGATG | 2 cut(s) | 22, 135 |
| BtsI | GCAGTG | 1 cut(s) | 162 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| BveI | ACCTGC | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 2 cut(s) | 169, 333 |
| CfoI | GCGC | 2 cut(s) | 216, 245 |
| Cfr10I | RCCGGY | 1 cut(s) | 331 |
| CseI | GACGC | 2 cut(s) | 220, 408 |
| Csp6I | GTAC | 2 cut(s) | 96, 229 |
| CviAII | CATG | 2 cut(s) | 221, 322 |
| CviQI | GTAC | 2 cut(s) | 96, 229 |
| DpnI | GATC | 3 cut(s) | 22, 250, 356 |
| DpnII | GATC | 3 cut(s) | 20, 248, 354 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco57I | CTGAAG | 1 cut(s) | 45 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| Esp3I | CGTCTC | 1 cut(s) | 130 |
| FaeI | CATG | 2 cut(s) | 224, 325 |
| FaiI | YATR | 6 cut(s) | 6, 222, 323, 368, 395, 424 |
| FatI | CATG | 2 cut(s) | 220, 321 |
| Fnu4HI | GCNGC | 3 cut(s) | 204, 326, 329 |
| FokI | GGATG | 2 cut(s) | 29, 122 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 3 cut(s) | 204, 326, 329 |
| GlaI | GCGC | 2 cut(s) | 215, 244 |
| GluI | GCNGC | 3 cut(s) | 204, 326, 329 |
| GsuI | CTGGAG | 1 cut(s) | 21 |
| HaeII | RGCGCY | 1 cut(s) | 246 |
| HapII | CCGG | 2 cut(s) | 246, 332 |
| HgaI | GACGC | 2 cut(s) | 220, 408 |
| HhaI | GCGC | 2 cut(s) | 216, 245 |
| Hin1II | CATG | 2 cut(s) | 224, 325 |
| Hin6I | GCGC | 2 cut(s) | 214, 243 |
| HinP1I | GCGC | 2 cut(s) | 214, 243 |
| HindIII | AAGCTT | 1 cut(s) | 27 |
| HinfI | GANTC | 4 cut(s) | 184, 380, 397, 458 |
| HpaII | CCGG | 2 cut(s) | 246, 332 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 130, 285, 429 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 442 |
| HpyAV | CCTTC | 2 cut(s) | 149, 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 1 cut(s) | 102 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 164, 325 |
| Hsp92II | CATG | 2 cut(s) | 224, 325 |
| HspAI | GCGC | 2 cut(s) | 214, 243 |
| KroI | GCCGGC | 1 cut(s) | 331 |
| KroNI | GCCGGC | 1 cut(s) | 333 |
| Kzo9I | GATC | 3 cut(s) | 20, 248, 354 |
| Lsp1109I | GCAGC | 3 cut(s) | 190, 312, 315 |
| MaeIII | GTNAC | 2 cut(s) | 208, 435 |
| MalI | GATC | 3 cut(s) | 22, 250, 356 |
| MboI | GATC | 3 cut(s) | 20, 248, 354 |
| MboII | GAAGA | 1 cut(s) | 283 |
| MflI | RGATCY | 2 cut(s) | 20, 248 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MluCI | AATT | 1 cut(s) | 286 |
| MlyI | GAGTC | 3 cut(s) | 374, 406, 452 |
| MnlI | CCTC | 3 cut(s) | 45, 339, 420 |
| MroNI | GCCGGC | 1 cut(s) | 331 |
| MroXI | GAANNNNTTC | 1 cut(s) | 290 |
| MspI | CCGG | 2 cut(s) | 246, 332 |
| MvnI | CGCG | 2 cut(s) | 214, 419 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 164, 325 |
| NaeI | GCCGGC | 1 cut(s) | 333 |
| NdeII | GATC | 3 cut(s) | 20, 248, 354 |
| NgoMIV | GCCGGC | 1 cut(s) | 331 |
| NlaIII | CATG | 2 cut(s) | 224, 325 |
| NlaIV | GGNNCC | 2 cut(s) | 157, 250 |
| NmuCI | GTSAC | 2 cut(s) | 208, 435 |
| PdiI | GCCGGC | 1 cut(s) | 333 |
| PdmI | GAANNNNTTC | 1 cut(s) | 290 |
| PfeI | GAWTC | 1 cut(s) | 184 |
| PkrI | GCNGC | 3 cut(s) | 205, 327, 330 |
| PleI | GAGTC | 3 cut(s) | 374, 405, 452 |
| PpsI | GAGTC | 3 cut(s) | 374, 405, 452 |
| PspN4I | GGNNCC | 2 cut(s) | 157, 250 |
| PstI | CTGCAG | 1 cut(s) | 104 |
| PsuI | RGATCY | 2 cut(s) | 20, 248 |
| RsaI | GTAC | 2 cut(s) | 97, 230 |
| RsaNI | GTAC | 2 cut(s) | 96, 229 |
| SatI | GCNGC | 3 cut(s) | 204, 326, 329 |
| Sau3AI | GATC | 3 cut(s) | 20, 248, 354 |
| SchI | GAGTC | 3 cut(s) | 374, 406, 452 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SetI | ASST | 6 cut(s) | 31, 101, 309, 390, 412, 452 |
| SfcI | CTRYAG | 1 cut(s) | 100 |
| SmlI | CTYRAG | 2 cut(s) | 54, 238 |
| SmoI | CTYRAG | 2 cut(s) | 54, 238 |
| Sse9I | AATT | 1 cut(s) | 286 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TasI | AATT | 1 cut(s) | 286 |
| TatI | WGTACW | 1 cut(s) | 228 |
| TfiI | GAWTC | 1 cut(s) | 184 |
| TscAI | CASTG | 1 cut(s) | 169 |
| TseFI | GTSAC | 2 cut(s) | 208, 435 |
| TseI | GCWGC | 3 cut(s) | 203, 325, 328 |
| Tsp45I | GTSAC | 2 cut(s) | 208, 435 |
| TspDTI | ATGAA | 1 cut(s) | 34 |
| TspGWI | ACGGA | 1 cut(s) | 112 |
| TspRI | CASTG | 1 cut(s) | 169 |
| XapI | RAATTY | 1 cut(s) | 286 |
| XmnI | GAANNNNTTC | 1 cut(s) | 290 |