gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 560 |
| Acc36I | ACCTGC | 2 cut(s) | 868, 1251 |
| AccB1I | GGYRCC | 2 cut(s) | 194, 640 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AciI | CCGC | 1 cut(s) | 708 |
| AclWI | GGATC | 1 cut(s) | 249 |
| AcsI | RAATTY | 3 cut(s) | 347, 536, 1558 |
| AcuI | CTGAAG | 2 cut(s) | 195, 617 |
| AfaI | GTAC | 3 cut(s) | 822, 895, 1566 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1203 |
| AflIII | ACRYGT | 2 cut(s) | 775, 1217 |
| AgsI | TTSAA | 7 cut(s) | 385, 470, 653, 691, 885, 1045, 1165 |
| AjnI | CCWGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| AleI | CACNNNNGTG | 1 cut(s) | 172 |
| AluBI | AGCT | 6 cut(s) | 215, 452, 566, 614, 888, 944 |
| AluI | AGCT | 6 cut(s) | 215, 452, 566, 614, 888, 944 |
| Alw21I | GWGCWC | 1 cut(s) | 568 |
| Alw26I | GTCTC | 2 cut(s) | 422, 1269 |
| AlwI | GGATC | 1 cut(s) | 249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1574 |
| AoxI | GGCC | 2 cut(s) | 124, 901 |
| ApoI | RAATTY | 3 cut(s) | 347, 536, 1558 |
| AspS9I | GGNCC | 1 cut(s) | 330 |
| AsuHPI | GGTGA | 2 cut(s) | 520, 840 |
| AvaII | GGWCC | 1 cut(s) | 330 |
| BanI | GGYRCC | 2 cut(s) | 194, 640 |
| BanII | GRGCYC | 1 cut(s) | 568 |
| BbsI | GAAGAC | 4 cut(s) | 239, 504, 605, 861 |
| Bbv12I | GWGCWC | 1 cut(s) | 568 |
| BccI | CCATC | 5 cut(s) | 100, 143, 185, 1036, 1520 |
| BciT130I | CCWGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| BcoDI | GTCTC | 2 cut(s) | 422, 1269 |
| BfaI | CTAG | 1 cut(s) | 741 |
| BfmI | CTRYAG | 4 cut(s) | 395, 889, 1338, 1404 |
| BfuAI | ACCTGC | 2 cut(s) | 868, 1251 |
| BmcAI | AGTACT | 1 cut(s) | 895 |
| Bme1390I | CCNGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| Bme18I | GGWCC | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 1 cut(s) | 330 |
| BmiI | GGNNCC | 3 cut(s) | 154, 196, 642 |
| BmrFI | CCNGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| BmsI | GCATC | 5 cut(s) | 346, 451, 790, 887, 1337 |
| BoxI | GACNNNNGTC | 1 cut(s) | 806 |
| BpiI | GAAGAC | 4 cut(s) | 239, 504, 605, 861 |
| BpuEI | CTTGAG | 4 cut(s) | 303, 789, 882, 1284 |
| BsaI | GGTCTC | 1 cut(s) | 1269 |
| BsaJI | CCNNGG | 3 cut(s) | 1369, 1370, 1568 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 190, 220, 565, 595 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1203 |
| Bse1I | ACTGG | 1 cut(s) | 1448 |
| Bse3DI | GCAATG | 2 cut(s) | 1123, 1416 |
| BseBI | CCWGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| BseDI | CCNNGG | 3 cut(s) | 1369, 1370, 1568 |
| BseGI | GGATG | 5 cut(s) | 111, 154, 781, 829, 1019 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1203 |
| BseMI | GCAATG | 2 cut(s) | 1123, 1416 |
| BseMII | CTCAG | 9 cut(s) | 32, 133, 185, 546, 743, 804, 989, 1386, 1566 |
| BseNI | ACTGG | 1 cut(s) | 1448 |
| BseRI | GAGGAG | 5 cut(s) | 16, 573, 706, 835, 1484 |
| BseYI | CCCAGC | 1 cut(s) | 1073 |
| BsgI | GTGCAG | 5 cut(s) | 318, 744, 857, 1553, 1569 |
| BshFI | GGCC | 2 cut(s) | 126, 903 |
| BshNI | GGYRCC | 2 cut(s) | 194, 640 |
| BsiHKAI | GWGCWC | 1 cut(s) | 568 |
| BslFI | GGGAC | 1 cut(s) | 751 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1203 |
| BsmAI | GTCTC | 2 cut(s) | 422, 1269 |
| BsmFI | GGGAC | 1 cut(s) | 751 |
| BsmI | GAATGC | 2 cut(s) | 1181, 1405 |
| BsnI | GGCC | 2 cut(s) | 126, 903 |
| Bso31I | GGTCTC | 1 cut(s) | 1269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 568 |
| Bsp1407I | TGTACA | 1 cut(s) | 820 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| BspACI | CCGC | 1 cut(s) | 708 |
| BspANI | GGCC | 2 cut(s) | 126, 903 |
| BspCNI | CTCAG | 9 cut(s) | 31, 132, 184, 545, 742, 803, 988, 1387, 1567 |
| BspLI | GGNNCC | 3 cut(s) | 154, 196, 642 |
| BspMAI | CTGCAG | 2 cut(s) | 399, 1342 |
| BspMI | ACCTGC | 2 cut(s) | 868, 1251 |
| BspPI | GGATC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 2 cut(s) | 194, 640 |
| BspTNI | GGTCTC | 1 cut(s) | 1269 |
| BsrDI | GCAATG | 2 cut(s) | 1123, 1416 |
| BsrGI | TGTACA | 1 cut(s) | 820 |
| BsrI | ACTGG | 1 cut(s) | 1448 |
| BssECI | CCNNGG | 3 cut(s) | 1369, 1370, 1568 |
| BssMI | GATC | 1 cut(s) | 241 |
| Bst2UI | CCWGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| Bst4CI | ACNGT | 8 cut(s) | 7, 49, 296, 475, 514, 556, 765, 925 |
| Bst6I | CTCTTC | 3 cut(s) | 916, 1105, 1272 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1415 |
| BstAUI | TGTACA | 1 cut(s) | 820 |
| BstC8I | GCNNGC | 2 cut(s) | 1416, 1449 |
| BstF5I | GGATG | 5 cut(s) | 111, 154, 781, 829, 1019 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMAI | GTCTC | 2 cut(s) | 422, 1269 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 201, 461, 674, 1415 |
| BstNI | CCWGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| BstNSI | RCATGY | 3 cut(s) | 779, 1221, 1260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 806 |
| BstSCI | CCNGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| BstSFI | CTRYAG | 4 cut(s) | 395, 889, 1338, 1404 |
| BstV2I | GAAGAC | 4 cut(s) | 239, 504, 605, 861 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1319, 1443 |
| BsuRI | GGCC | 2 cut(s) | 126, 903 |
| BtsCI | GGATG | 5 cut(s) | 111, 154, 781, 829, 1019 |
| BtsI | GCAGTG | 1 cut(s) | 306 |
| BtsIMutI | CAGTG | 6 cut(s) | 45, 179, 186, 306, 1229, 1386 |
| BveI | ACCTGC | 2 cut(s) | 868, 1251 |
| Cac8I | GCNNGC | 2 cut(s) | 1416, 1449 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1574 |
| Cfr13I | GGNCC | 1 cut(s) | 330 |
| CsiI | ACCWGGT | 2 cut(s) | 931, 1327 |
| Csp6I | GTAC | 3 cut(s) | 821, 894, 1565 |
| CviAII | CATG | 8 cut(s) | 259, 735, 776, 796, 1003, 1039, 1218, 1257 |
| CviQI | GTAC | 3 cut(s) | 821, 894, 1565 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 3 cut(s) | 916, 1105, 1272 |
| EarI | CTCTTC | 3 cut(s) | 916, 1105, 1272 |
| Ecl136II | GAGCTC | 1 cut(s) | 566 |
| Eco147I | AGGCCT | 1 cut(s) | 903 |
| Eco24I | GRGCYC | 1 cut(s) | 568 |
| Eco31I | GGTCTC | 1 cut(s) | 1269 |
| Eco47I | GGWCC | 1 cut(s) | 330 |
| Eco53kI | GAGCTC | 1 cut(s) | 566 |
| Eco57I | CTGAAG | 2 cut(s) | 195, 617 |
| EcoICRI | GAGCTC | 1 cut(s) | 566 |
| EcoRII | CCWGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| EcoT38I | GRGCYC | 1 cut(s) | 568 |
| FaeI | CATG | 8 cut(s) | 262, 738, 779, 799, 1006, 1042, 1221, 1260 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 193, 225, 450, 482 |
| FaqI | GGGAC | 1 cut(s) | 751 |
| FatI | CATG | 8 cut(s) | 258, 734, 775, 795, 1002, 1038, 1217, 1256 |
| FauI | CCCGC | 1 cut(s) | 715 |
| FauNDI | CATATG | 1 cut(s) | 1473 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| FokI | GGATG | 5 cut(s) | 118, 161, 768, 816, 1006 |
| FriOI | GRGCYC | 1 cut(s) | 568 |
| FspBI | CTAG | 1 cut(s) | 741 |
| GsaI | CCCAGC | 1 cut(s) | 1077 |
| HaeIII | GGCC | 2 cut(s) | 126, 903 |
| Hin1II | CATG | 8 cut(s) | 262, 738, 779, 799, 1006, 1042, 1221, 1260 |
| HincII | GTYRAC | 2 cut(s) | 256, 593 |
| HindII | GTYRAC | 2 cut(s) | 256, 593 |
| HinfI | GANTC | 5 cut(s) | 77, 110, 802, 826, 979 |
| HpaI | GTTAAC | 1 cut(s) | 256 |
| HphI | GGTGA | 2 cut(s) | 520, 840 |
| Hpy166II | GTNNAC | 3 cut(s) | 52, 256, 593 |
| Hpy188I | TCNGA | 5 cut(s) | 21, 122, 418, 535, 978 |
| Hpy188III | TCNNGA | 5 cut(s) | 320, 437, 467, 550, 1186 |
| Hpy8I | GTNNAC | 3 cut(s) | 52, 256, 593 |
| HpyAV | CCTTC | 3 cut(s) | 65, 219, 966 |
| HpyCH4III | ACNGT | 8 cut(s) | 7, 49, 296, 475, 514, 556, 765, 925 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 201, 461, 674, 1415 |
| Hsp92II | CATG | 8 cut(s) | 262, 738, 779, 799, 1006, 1042, 1221, 1260 |
| KspAI | GTTAAC | 1 cut(s) | 256 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LmnI | GCTCC | 5 cut(s) | 158, 922, 949, 1178, 1460 |
| LweI | GCATC | 5 cut(s) | 346, 451, 790, 887, 1337 |
| MabI | ACCWGGT | 2 cut(s) | 931, 1327 |
| MaeI | CTAG | 1 cut(s) | 741 |
| MaeIII | GTNAC | 2 cut(s) | 508, 1294 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 8 cut(s) | 244, 509, 610, 861, 873, 903, 1122, 1259 |
| MfeI | CAATTG | 1 cut(s) | 380 |
| MhlI | GDGCHC | 1 cut(s) | 568 |
| MluCI | AATT | 7 cut(s) | 347, 380, 486, 536, 569, 660, 1558 |
| MlyI | GAGTC | 3 cut(s) | 86, 119, 796 |
| MmeI | TCCRAC | 3 cut(s) | 105, 944, 1541 |
| MseI | TTAA | 4 cut(s) | 255, 519, 609, 1095 |
| MslI | CAYNNNNRTG | 4 cut(s) | 172, 506, 1052, 1222 |
| MspA1I | CMGCKG | 2 cut(s) | 215, 710 |
| MspR9I | CCNGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| MunI | CAATTG | 1 cut(s) | 380 |
| Mva1269I | GAATGC | 2 cut(s) | 1181, 1405 |
| MvaI | CCWGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 201, 461, 674, 1415 |
| NdeI | CATATG | 1 cut(s) | 1473 |
| NdeII | GATC | 1 cut(s) | 241 |
| NlaIII | CATG | 8 cut(s) | 262, 738, 779, 799, 1006, 1042, 1221, 1260 |
| NlaIV | GGNNCC | 3 cut(s) | 154, 196, 642 |
| NmuCI | GTSAC | 2 cut(s) | 508, 1294 |
| NspI | RCATGY | 3 cut(s) | 779, 1221, 1260 |
| OliI | CACNNNNGTG | 1 cut(s) | 172 |
| PasI | CCCWGGG | 1 cut(s) | 1370 |
| PceI | AGGCCT | 1 cut(s) | 903 |
| PciI | ACATGT | 2 cut(s) | 775, 1217 |
| PctI | GAATGC | 2 cut(s) | 1181, 1405 |
| PfeI | GAWTC | 2 cut(s) | 826, 979 |
| PleI | GAGTC | 3 cut(s) | 85, 118, 796 |
| PpsI | GAGTC | 3 cut(s) | 85, 118, 796 |
| PscI | ACATGT | 2 cut(s) | 775, 1217 |
| PshAI | GACNNNNGTC | 1 cut(s) | 806 |
| PsiI | TTATAA | 1 cut(s) | 560 |
| Psp124BI | GAGCTC | 1 cut(s) | 568 |
| Psp6I | CCWGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| PspFI | CCCAGC | 1 cut(s) | 1073 |
| PspGI | CCWGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| PspN4I | GGNNCC | 3 cut(s) | 154, 196, 642 |
| PspPI | GGNCC | 1 cut(s) | 330 |
| PstI | CTGCAG | 2 cut(s) | 399, 1342 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1574 |
| PvuII | CAGCTG | 1 cut(s) | 215 |
| RsaI | GTAC | 3 cut(s) | 822, 895, 1566 |
| RsaNI | GTAC | 3 cut(s) | 821, 894, 1565 |
| RseI | CAYNNNNRTG | 4 cut(s) | 172, 506, 1052, 1222 |
| SacI | GAGCTC | 1 cut(s) | 568 |
| SaqAI | TTAA | 4 cut(s) | 255, 519, 609, 1095 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| Sau96I | GGNCC | 1 cut(s) | 330 |
| ScaI | AGTACT | 1 cut(s) | 895 |
| SchI | GAGTC | 3 cut(s) | 86, 119, 796 |
| ScrFI | CCNGG | 8 cut(s) | 94, 229, 334, 645, 933, 1329, 1371, 1569 |
| SduI | GDGCHC | 1 cut(s) | 568 |
| SexAI | ACCWGGT | 2 cut(s) | 931, 1327 |
| SfaNI | GCATC | 5 cut(s) | 346, 451, 790, 887, 1337 |
| SfcI | CTRYAG | 4 cut(s) | 395, 889, 1338, 1404 |
| SinI | GGWCC | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 172, 506, 1052, 1222 |
| SmlI | CTYRAG | 4 cut(s) | 318, 804, 897, 1299 |
| SmoI | CTYRAG | 4 cut(s) | 318, 804, 897, 1299 |
| Sse9I | AATT | 7 cut(s) | 347, 380, 486, 536, 569, 660, 1558 |
| SseBI | AGGCCT | 1 cut(s) | 903 |
| SsiI | CCGC | 1 cut(s) | 708 |
| SspI | AATATT | 1 cut(s) | 1316 |
| SspMI | CTAG | 1 cut(s) | 741 |
| SstI | GAGCTC | 1 cut(s) | 568 |
| StuI | AGGCCT | 1 cut(s) | 903 |
| StyD4I | CCNGG | 8 cut(s) | 92, 227, 332, 643, 931, 1327, 1369, 1567 |
| TaaI | ACNGT | 8 cut(s) | 7, 49, 296, 475, 514, 556, 765, 925 |
| TaqI | TCGA | 1 cut(s) | 72 |
| TasI | AATT | 7 cut(s) | 347, 380, 486, 536, 569, 660, 1558 |
| TatI | WGTACW | 2 cut(s) | 820, 893 |
| TfiI | GAWTC | 2 cut(s) | 826, 979 |
| Tru1I | TTAA | 4 cut(s) | 255, 519, 609, 1095 |
| Tru9I | TTAA | 4 cut(s) | 255, 519, 609, 1095 |
| TscAI | CASTG | 6 cut(s) | 52, 179, 193, 306, 1229, 1393 |
| TseFI | GTSAC | 2 cut(s) | 508, 1294 |
| Tsp45I | GTSAC | 2 cut(s) | 508, 1294 |
| TspDTI | ATGAA | 4 cut(s) | 305, 510, 948, 1500 |
| TspRI | CASTG | 6 cut(s) | 52, 179, 193, 306, 1229, 1393 |
| VpaK11BI | GGWCC | 1 cut(s) | 330 |
| XapI | RAATTY | 3 cut(s) | 347, 536, 1558 |
| XceI | RCATGY | 3 cut(s) | 779, 1221, 1260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 134 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 741 |
| ZrmI | AGTACT | 1 cut(s) | 895 |