gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 221 |
| AcoI | YGGCCR | 2 cut(s) | 265, 285 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgsI | TTSAA | 2 cut(s) | 428, 470 |
| AluBI | AGCT | 1 cut(s) | 215 |
| AluI | AGCT | 1 cut(s) | 215 |
| AoxI | GGCC | 2 cut(s) | 265, 285 |
| ApeKI | GCWGC | 2 cut(s) | 353, 452 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 262, 294 |
| AspLEI | GCGC | 1 cut(s) | 299 |
| BalI | TGGCCA | 2 cut(s) | 267, 287 |
| BbvI | GCAGC | 2 cut(s) | 365, 439 |
| BccI | CCATC | 2 cut(s) | 143, 185 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 1 cut(s) | 395 |
| BisI | GCNGC | 2 cut(s) | 354, 453 |
| BlsI | GCNGC | 2 cut(s) | 355, 454 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 2 cut(s) | 194, 451 |
| BpuEI | CTTGAG | 2 cut(s) | 329, 368 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 471, 501 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseMII | CTCAG | 3 cut(s) | 53, 185, 207 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseXI | GCAGC | 2 cut(s) | 365, 439 |
| BsgI | GTGCAG | 1 cut(s) | 300 |
| BshFI | GGCC | 2 cut(s) | 267, 287 |
| BsnI | GGCC | 2 cut(s) | 267, 287 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| BspANI | GGCC | 2 cut(s) | 267, 287 |
| BspCNI | CTCAG | 3 cut(s) | 52, 184, 208 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspMAI | CTGCAG | 1 cut(s) | 399 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssMI | GATC | 1 cut(s) | 241 |
| BssNAI | GTATAC | 1 cut(s) | 222 |
| Bst1107I | GTATAC | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 4 cut(s) | 31, 49, 475, 514 |
| BstDEI | CTNAG | 5 cut(s) | 39, 171, 216, 275, 447 |
| BstHHI | GCGC | 1 cut(s) | 299 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 461 |
| BstNSI | RCATGY | 1 cut(s) | 328 |
| BstSFI | CTRYAG | 1 cut(s) | 395 |
| BstV1I | GCAGC | 2 cut(s) | 365, 439 |
| BstZ17I | GTATAC | 1 cut(s) | 222 |
| BsuRI | GGCC | 2 cut(s) | 267, 287 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| CfoI | GCGC | 1 cut(s) | 299 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 157, 192, 308, 343 |
| CviAII | CATG | 6 cut(s) | 93, 162, 289, 294, 325, 436 |
| CviJI | RGCY | 8 cut(s) | 23, 97, 153, 215, 267, 287, 337, 452 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 97, 153, 215, 267, 287, 337, 452 |
| DdeI | CTNAG | 5 cut(s) | 39, 171, 216, 275, 447 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| EaeI | YGGCCR | 2 cut(s) | 265, 285 |
| FaeI | CATG | 6 cut(s) | 96, 165, 292, 297, 328, 439 |
| FatI | CATG | 6 cut(s) | 92, 161, 288, 293, 324, 435 |
| FblI | GTMKAC | 1 cut(s) | 221 |
| Fnu4HI | GCNGC | 2 cut(s) | 354, 453 |
| Fsp4HI | GCNGC | 2 cut(s) | 354, 453 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GlaI | GCGC | 1 cut(s) | 298 |
| GluI | GCNGC | 2 cut(s) | 354, 453 |
| HaeIII | GGCC | 2 cut(s) | 267, 287 |
| HhaI | GCGC | 1 cut(s) | 299 |
| Hin1II | CATG | 6 cut(s) | 96, 165, 292, 297, 328, 439 |
| Hin6I | GCGC | 1 cut(s) | 297 |
| HinP1I | GCGC | 1 cut(s) | 297 |
| HinfI | GANTC | 3 cut(s) | 77, 110, 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 222 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 190 |
| Hpy188III | TCNNGA | 1 cut(s) | 198 |
| Hpy8I | GTNNAC | 1 cut(s) | 222 |
| HpyAV | CCTTC | 1 cut(s) | 124 |
| HpyCH4III | ACNGT | 4 cut(s) | 31, 49, 475, 514 |
| HpyCH4V | TGCA | 6 cut(s) | 185, 317, 353, 379, 397, 464 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 461 |
| HpyF3I | CTNAG | 5 cut(s) | 39, 171, 216, 275, 447 |
| Hsp92II | CATG | 6 cut(s) | 96, 165, 292, 297, 328, 439 |
| HspAI | GCGC | 1 cut(s) | 297 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 3 cut(s) | 183, 214, 294 |
| Lsp1109I | GCAGC | 2 cut(s) | 365, 439 |
| LweI | GCATC | 2 cut(s) | 194, 451 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeIII | GTNAC | 2 cut(s) | 31, 508 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 1 cut(s) | 509 |
| MlsI | TGGCCA | 2 cut(s) | 267, 287 |
| MluNI | TGGCCA | 2 cut(s) | 267, 287 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 3 cut(s) | 105, 283, 457 |
| MnlI | CCTC | 1 cut(s) | 34 |
| Mox20I | TGGCCA | 2 cut(s) | 267, 287 |
| MscI | TGGCCA | 2 cut(s) | 267, 287 |
| MseI | TTAA | 2 cut(s) | 120, 255 |
| Msp20I | TGGCCA | 2 cut(s) | 267, 287 |
| MspA1I | CMGCKG | 1 cut(s) | 215 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 461 |
| NdeII | GATC | 1 cut(s) | 241 |
| NlaIII | CATG | 6 cut(s) | 96, 165, 292, 297, 328, 439 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NspI | RCATGY | 1 cut(s) | 328 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PfeI | GAWTC | 2 cut(s) | 110, 400 |
| PkrI | GCNGC | 2 cut(s) | 355, 454 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PscI | ACATGT | 1 cut(s) | 324 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PstI | CTGCAG | 1 cut(s) | 399 |
| PvuII | CAGCTG | 1 cut(s) | 215 |
| SaqAI | TTAA | 2 cut(s) | 120, 255 |
| SatI | GCNGC | 2 cut(s) | 354, 453 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SetI | ASST | 3 cut(s) | 127, 217, 361 |
| SfaNI | GCATC | 2 cut(s) | 194, 451 |
| SfcI | CTRYAG | 1 cut(s) | 395 |
| SmlI | CTYRAG | 3 cut(s) | 18, 344, 383 |
| SmoI | CTYRAG | 3 cut(s) | 18, 344, 383 |
| SspI | AATATT | 1 cut(s) | 373 |
| SspMI | CTAG | 1 cut(s) | 456 |
| TaaI | ACNGT | 4 cut(s) | 31, 49, 475, 514 |
| TfiI | GAWTC | 2 cut(s) | 110, 400 |
| Tru1I | TTAA | 2 cut(s) | 120, 255 |
| Tru9I | TTAA | 2 cut(s) | 120, 255 |
| TscAI | CASTG | 1 cut(s) | 519 |
| TseI | GCWGC | 2 cut(s) | 353, 452 |
| TspDTI | ATGAA | 1 cut(s) | 510 |
| TspRI | CASTG | 1 cut(s) | 519 |
| XceI | RCATGY | 1 cut(s) | 328 |
| XmiI | GTMKAC | 1 cut(s) | 221 |
| XspI | CTAG | 1 cut(s) | 456 |