gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 977 |
| Acc36I | ACCTGC | 1 cut(s) | 960 |
| AccB1I | GGYRCC | 1 cut(s) | 494 |
| AccBSI | CCGCTC | 1 cut(s) | 651 |
| AccI | GTMKAC | 1 cut(s) | 77 |
| AccII | CGCG | 1 cut(s) | 915 |
| AciI | CCGC | 3 cut(s) | 649, 1044, 1182 |
| AclWI | GGATC | 4 cut(s) | 139, 292, 614, 1250 |
| AcoI | YGGCCR | 3 cut(s) | 282, 579, 823 |
| AcsI | RAATTY | 1 cut(s) | 62 |
| AcuI | CTGAAG | 1 cut(s) | 707 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 955, 1137, 1215, 1228 |
| AgsI | TTSAA | 4 cut(s) | 155, 1001, 1069, 1373 |
| AjnI | CCWGG | 3 cut(s) | 1214, 1324, 1402 |
| AluBI | AGCT | 6 cut(s) | 239, 412, 727, 911, 1016, 1074 |
| AluI | AGCT | 6 cut(s) | 239, 412, 727, 911, 1016, 1074 |
| Alw26I | GTCTC | 3 cut(s) | 48, 302, 649 |
| AlwI | GGATC | 4 cut(s) | 139, 292, 614, 1250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1301 |
| Ama87I | CYCGRG | 2 cut(s) | 240, 305 |
| AoxI | GGCC | 8 cut(s) | 282, 579, 675, 823, 945, 1084, 1212, 1321 |
| ApeKI | GCWGC | 4 cut(s) | 732, 959, 1178, 1184 |
| ApoI | RAATTY | 1 cut(s) | 62 |
| AseI | ATTAAT | 1 cut(s) | 555 |
| AspLEI | GCGC | 2 cut(s) | 525, 978 |
| AspS9I | GGNCC | 6 cut(s) | 415, 675, 875, 946, 1121, 1322 |
| AsuC2I | CCSGG | 1 cut(s) | 1139 |
| AsuHPI | GGTGA | 2 cut(s) | 693, 1185 |
| AvaI | CYCGRG | 2 cut(s) | 240, 305 |
| AvaII | GGWCC | 3 cut(s) | 415, 875, 1121 |
| BalI | TGGCCA | 3 cut(s) | 284, 581, 825 |
| BanI | GGYRCC | 1 cut(s) | 494 |
| BauI | CACGAG | 1 cut(s) | 753 |
| BbsI | GAAGAC | 1 cut(s) | 214 |
| BbvI | GCAGC | 4 cut(s) | 744, 946, 1165, 1171 |
| BccI | CCATC | 7 cut(s) | 296, 571, 662, 776, 834, 929, 1351 |
| BceAI | ACGGC | 2 cut(s) | 1071, 1306 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1367, 1401 |
| BciT130I | CCWGG | 3 cut(s) | 1216, 1326, 1404 |
| BcnI | CCSGG | 1 cut(s) | 1139 |
| BcoDI | GTCTC | 3 cut(s) | 48, 302, 649 |
| BfaI | CTAG | 1 cut(s) | 68 |
| BfmI | CTRYAG | 3 cut(s) | 165, 1011, 1132 |
| BfuAI | ACCTGC | 1 cut(s) | 960 |
| BglII | AGATCT | 2 cut(s) | 844, 1335 |
| BisI | GCNGC | 5 cut(s) | 733, 960, 1179, 1182, 1185 |
| BlsI | GCNGC | 5 cut(s) | 734, 961, 1180, 1183, 1186 |
| Bme1390I | CCNGG | 4 cut(s) | 1139, 1216, 1326, 1404 |
| Bme18I | GGWCC | 3 cut(s) | 415, 875, 1121 |
| BmeT110I | CYCGRG | 2 cut(s) | 240, 305 |
| BmgT120I | GGNCC | 6 cut(s) | 415, 675, 875, 946, 1121, 1322 |
| BmiI | GGNNCC | 7 cut(s) | 417, 496, 877, 1048, 1123, 1144, 1220 |
| BmrFI | CCNGG | 4 cut(s) | 1139, 1216, 1326, 1404 |
| BmsI | GCATC | 2 cut(s) | 538, 539 |
| BpiI | GAAGAC | 1 cut(s) | 214 |
| BpmI | CTGGAG | 3 cut(s) | 30, 102, 555 |
| BpuEI | CTTGAG | 1 cut(s) | 1397 |
| BpuMI | CCSGG | 1 cut(s) | 1139 |
| Bsa29I | ATCGAT | 1 cut(s) | 1383 |
| BsaBI | GATNNNNATC | 2 cut(s) | 136, 843 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 8 cut(s) | 279, 1051, 1087, 1103, 1138, 1173, 1209, 1324 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 331, 361, 1019, 1049 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 955, 1137, 1215, 1228 |
| Bse118I | RCCGGY | 1 cut(s) | 1040 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse8I | GATNNNNATC | 2 cut(s) | 136, 843 |
| BseBI | CCWGG | 3 cut(s) | 1216, 1326, 1404 |
| BseCI | ATCGAT | 1 cut(s) | 1383 |
| BseDI | CCNNGG | 8 cut(s) | 279, 1051, 1087, 1103, 1138, 1173, 1209, 1324 |
| BseGI | GGATG | 2 cut(s) | 582, 826 |
| BseJI | GATNNNNATC | 2 cut(s) | 136, 843 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 955, 1137, 1215, 1228 |
| BseMII | CTCAG | 3 cut(s) | 306, 642, 954 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseRI | GAGGAG | 6 cut(s) | 86, 449, 771, 1024, 1195, 1198 |
| BseXI | GCAGC | 4 cut(s) | 744, 946, 1165, 1171 |
| Bsh1236I | CGCG | 1 cut(s) | 915 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1387 |
| BshFI | GGCC | 8 cut(s) | 284, 581, 677, 825, 947, 1086, 1214, 1323 |
| BshNI | GGYRCC | 1 cut(s) | 494 |
| BshVI | ATCGAT | 1 cut(s) | 1383 |
| BsiEI | CGRYCG | 1 cut(s) | 1387 |
| BsiHKCI | CYCGRG | 2 cut(s) | 240, 305 |
| BsiSI | CCGG | 4 cut(s) | 512, 560, 1041, 1138 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 955, 1137, 1215, 1228 |
| BsmAI | GTCTC | 3 cut(s) | 48, 302, 649 |
| BsnI | GGCC | 8 cut(s) | 284, 581, 677, 825, 947, 1086, 1214, 1323 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 2 cut(s) | 240, 305 |
| Bsp19I | CCATGG | 2 cut(s) | 279, 1173 |
| Bsp68I | TCGCGA | 1 cut(s) | 915 |
| BspACI | CCGC | 3 cut(s) | 649, 1044, 1182 |
| BspANI | GGCC | 8 cut(s) | 284, 581, 677, 825, 947, 1086, 1214, 1323 |
| BspCNI | CTCAG | 3 cut(s) | 305, 641, 955 |
| BspDI | ATCGAT | 1 cut(s) | 1383 |
| BspFNI | CGCG | 1 cut(s) | 915 |
| BspLI | GGNNCC | 7 cut(s) | 417, 496, 877, 1048, 1123, 1144, 1220 |
| BspMAI | CTGCAG | 1 cut(s) | 169 |
| BspMI | ACCTGC | 1 cut(s) | 960 |
| BspPI | GGATC | 4 cut(s) | 139, 292, 614, 1250 |
| BspQI | GCTCTTC | 1 cut(s) | 1368 |
| BspT107I | GGYRCC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrBI | CCGCTC | 1 cut(s) | 651 |
| BsrFI | RCCGGY | 1 cut(s) | 1040 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| BssAI | RCCGGY | 1 cut(s) | 1040 |
| BssECI | CCNNGG | 8 cut(s) | 279, 1051, 1087, 1103, 1138, 1173, 1209, 1324 |
| BssNAI | GTATAC | 1 cut(s) | 78 |
| BssSI | CACGAG | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 2 cut(s) | 279, 1173 |
| Bst1107I | GTATAC | 1 cut(s) | 78 |
| Bst2BI | CACGAG | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 3 cut(s) | 1216, 1326, 1404 |
| Bst4CI | ACNGT | 6 cut(s) | 13, 37, 94, 373, 643, 1303 |
| Bst6I | CTCTTC | 2 cut(s) | 1132, 1368 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 2 cut(s) | 441, 913 |
| BstDEI | CTNAG | 4 cut(s) | 292, 628, 781, 963 |
| BstDSI | CCRYGG | 5 cut(s) | 279, 1051, 1087, 1103, 1173 |
| BstF5I | GGATG | 2 cut(s) | 582, 826 |
| BstFNI | CGCG | 1 cut(s) | 915 |
| BstHHI | GCGC | 2 cut(s) | 525, 978 |
| BstMAI | GTCTC | 3 cut(s) | 48, 302, 649 |
| BstMCI | CGRYCG | 1 cut(s) | 1387 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 173, 975, 1013, 1178, 1184 |
| BstNI | CCWGG | 3 cut(s) | 1216, 1326, 1404 |
| BstSCI | CCNGG | 4 cut(s) | 1137, 1214, 1324, 1402 |
| BstSFI | CTRYAG | 3 cut(s) | 165, 1011, 1132 |
| BstUI | CGCG | 1 cut(s) | 915 |
| BstV1I | GCAGC | 4 cut(s) | 744, 946, 1165, 1171 |
| BstV2I | GAAGAC | 1 cut(s) | 214 |
| BstX2I | RGATCY | 3 cut(s) | 297, 844, 1335 |
| BstYI | RGATCY | 3 cut(s) | 297, 844, 1335 |
| BstZ17I | GTATAC | 1 cut(s) | 78 |
| Bsu15I | ATCGAT | 1 cut(s) | 1383 |
| BsuRI | GGCC | 8 cut(s) | 284, 581, 677, 825, 947, 1086, 1214, 1323 |
| BsuTUI | ATCGAT | 1 cut(s) | 1383 |
| BtgI | CCRYGG | 5 cut(s) | 279, 1051, 1087, 1103, 1173 |
| BtgZI | GCGATG | 1 cut(s) | 1145 |
| BtsCI | GGATG | 2 cut(s) | 582, 826 |
| BtsI | GCAGTG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 6 cut(s) | 18, 33, 60, 636, 1299, 1312 |
| BtuMI | TCGCGA | 1 cut(s) | 915 |
| BveI | ACCTGC | 1 cut(s) | 960 |
| Cac8I | GCNNGC | 2 cut(s) | 441, 913 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1301 |
| CfoI | GCGC | 2 cut(s) | 525, 978 |
| Cfr10I | RCCGGY | 1 cut(s) | 1040 |
| Cfr13I | GGNCC | 6 cut(s) | 415, 675, 875, 946, 1121, 1322 |
| ClaI | ATCGAT | 1 cut(s) | 1383 |
| CsiI | ACCWGGT | 1 cut(s) | 1402 |
| CviAII | CATG | 3 cut(s) | 280, 672, 1174 |
| DdeI | CTNAG | 4 cut(s) | 292, 628, 781, 963 |
| EaeI | YGGCCR | 3 cut(s) | 282, 579, 823 |
| Eam1104I | CTCTTC | 2 cut(s) | 1132, 1368 |
| EarI | CTCTTC | 2 cut(s) | 1132, 1368 |
| Eco130I | CCWWGG | 2 cut(s) | 279, 1173 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco47I | GGWCC | 3 cut(s) | 415, 875, 1121 |
| Eco57I | CTGAAG | 1 cut(s) | 707 |
| Eco88I | CYCGRG | 2 cut(s) | 240, 305 |
| EcoO109I | RGGNCCY | 1 cut(s) | 946 |
| EcoRII | CCWGG | 3 cut(s) | 1214, 1324, 1402 |
| EcoT14I | CCWWGG | 2 cut(s) | 279, 1173 |
| ErhI | CCWWGG | 2 cut(s) | 279, 1173 |
| FaeI | CATG | 3 cut(s) | 283, 675, 1177 |
| FatI | CATG | 3 cut(s) | 279, 671, 1173 |
| FauI | CCCGC | 1 cut(s) | 656 |
| FblI | GTMKAC | 1 cut(s) | 77 |
| Fnu4HI | GCNGC | 5 cut(s) | 733, 960, 1179, 1182, 1185 |
| FokI | GGATG | 2 cut(s) | 589, 813 |
| Fsp4HI | GCNGC | 5 cut(s) | 733, 960, 1179, 1182, 1185 |
| FspBI | CTAG | 1 cut(s) | 68 |
| FspI | TGCGCA | 1 cut(s) | 977 |
| GlaI | GCGC | 2 cut(s) | 524, 977 |
| GluI | GCNGC | 5 cut(s) | 733, 960, 1179, 1182, 1185 |
| GsuI | CTGGAG | 3 cut(s) | 30, 102, 555 |
| HaeIII | GGCC | 8 cut(s) | 284, 581, 677, 825, 947, 1086, 1214, 1323 |
| HapII | CCGG | 4 cut(s) | 512, 560, 1041, 1138 |
| HhaI | GCGC | 2 cut(s) | 525, 978 |
| Hin1II | CATG | 3 cut(s) | 283, 675, 1177 |
| Hin6I | GCGC | 2 cut(s) | 523, 976 |
| HinP1I | GCGC | 2 cut(s) | 523, 976 |
| HincII | GTYRAC | 1 cut(s) | 355 |
| HindII | GTYRAC | 1 cut(s) | 355 |
| HinfI | GANTC | 7 cut(s) | 41, 210, 224, 595, 614, 718, 1001 |
| HpaII | CCGG | 4 cut(s) | 512, 560, 1041, 1138 |
| HphI | GGTGA | 2 cut(s) | 693, 1185 |
| Hpy166II | GTNNAC | 4 cut(s) | 78, 355, 639, 1409 |
| Hpy188I | TCNGA | 6 cut(s) | 234, 295, 717, 775, 875, 1435 |
| Hpy8I | GTNNAC | 4 cut(s) | 78, 355, 639, 1409 |
| Hpy99I | CGWCG | 1 cut(s) | 875 |
| HpyAV | CCTTC | 4 cut(s) | 80, 244, 752, 959 |
| HpyCH4III | ACNGT | 6 cut(s) | 13, 37, 94, 373, 643, 1303 |
| HpyCH4IV | ACGT | 2 cut(s) | 124, 870 |
| HpyCH4V | TGCA | 5 cut(s) | 167, 530, 732, 815, 1333 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 173, 975, 1013, 1178, 1184 |
| HpyF3I | CTNAG | 4 cut(s) | 292, 628, 781, 963 |
| HpySE526I | ACGT | 2 cut(s) | 124, 870 |
| Hsp92II | CATG | 3 cut(s) | 283, 675, 1177 |
| HspAI | GCGC | 2 cut(s) | 523, 976 |
| LguI | GCTCTTC | 1 cut(s) | 1368 |
| LmnI | GCTCC | 4 cut(s) | 352, 656, 1012, 1224 |
| Lsp1109I | GCAGC | 4 cut(s) | 744, 946, 1165, 1171 |
| LweI | GCATC | 2 cut(s) | 538, 539 |
| MabI | ACCWGGT | 1 cut(s) | 1402 |
| MaeI | CTAG | 1 cut(s) | 68 |
| MaeII | ACGT | 2 cut(s) | 124, 870 |
| MaeIII | GTNAC | 3 cut(s) | 55, 254, 1021 |
| MbiI | CCGCTC | 1 cut(s) | 651 |
| MboII | GAAGA | 7 cut(s) | 104, 219, 581, 713, 854, 1119, 1385 |
| MflI | RGATCY | 3 cut(s) | 297, 844, 1335 |
| MlsI | TGGCCA | 3 cut(s) | 284, 581, 825 |
| MluCI | AATT | 5 cut(s) | 62, 155, 394, 424, 1093 |
| MluNI | TGGCCA | 3 cut(s) | 284, 581, 825 |
| MlyI | GAGTC | 3 cut(s) | 50, 204, 233 |
| MmeI | TCCRAC | 3 cut(s) | 853, 1170, 1178 |
| Mox20I | TGGCCA | 3 cut(s) | 284, 581, 825 |
| MscI | TGGCCA | 3 cut(s) | 284, 581, 825 |
| MseI | TTAA | 2 cut(s) | 555, 620 |
| MslI | CAYNNNNRTG | 1 cut(s) | 860 |
| Msp20I | TGGCCA | 3 cut(s) | 284, 581, 825 |
| MspA1I | CMGCKG | 1 cut(s) | 1184 |
| MspI | CCGG | 4 cut(s) | 512, 560, 1041, 1138 |
| MspR9I | CCNGG | 4 cut(s) | 1139, 1216, 1326, 1404 |
| MvaI | CCWGG | 3 cut(s) | 1216, 1326, 1404 |
| MvnI | CGCG | 1 cut(s) | 915 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 173, 975, 1013, 1178, 1184 |
| NciI | CCSGG | 1 cut(s) | 1139 |
| NcoI | CCATGG | 2 cut(s) | 279, 1173 |
| NlaIII | CATG | 3 cut(s) | 283, 675, 1177 |
| NlaIV | GGNNCC | 7 cut(s) | 417, 496, 877, 1048, 1123, 1144, 1220 |
| NmeAIII | GCCGAG | 2 cut(s) | 579, 1190 |
| NmuCI | GTSAC | 3 cut(s) | 55, 254, 1021 |
| NruI | TCGCGA | 1 cut(s) | 915 |
| NsbI | TGCGCA | 1 cut(s) | 977 |
| PaeR7I | CTCGAG | 1 cut(s) | 240 |
| PciSI | GCTCTTC | 1 cut(s) | 1368 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 751 |
| PfeI | GAWTC | 4 cut(s) | 595, 614, 718, 1001 |
| PflFI | GACNNNGTC | 2 cut(s) | 13, 1301 |
| PkrI | GCNGC | 5 cut(s) | 734, 961, 1180, 1183, 1186 |
| Ple19I | CGATCG | 1 cut(s) | 1387 |
| PleI | GAGTC | 3 cut(s) | 49, 204, 232 |
| PpsI | GAGTC | 3 cut(s) | 49, 204, 232 |
| PshBI | ATTAAT | 1 cut(s) | 555 |
| Psp6I | CCWGG | 3 cut(s) | 1214, 1324, 1402 |
| PspGI | CCWGG | 3 cut(s) | 1214, 1324, 1402 |
| PspN4I | GGNNCC | 7 cut(s) | 417, 496, 877, 1048, 1123, 1144, 1220 |
| PspPI | GGNCC | 6 cut(s) | 415, 675, 875, 946, 1121, 1322 |
| PstI | CTGCAG | 1 cut(s) | 169 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1301 |
| PsuI | RGATCY | 3 cut(s) | 297, 844, 1335 |
| PsyI | GACNNNGTC | 2 cut(s) | 13, 1301 |
| PvuI | CGATCG | 1 cut(s) | 1387 |
| RruI | TCGCGA | 1 cut(s) | 915 |
| RseI | CAYNNNNRTG | 1 cut(s) | 860 |
| SapI | GCTCTTC | 1 cut(s) | 1368 |
| SaqAI | TTAA | 2 cut(s) | 555, 620 |
| SatI | GCNGC | 5 cut(s) | 733, 960, 1179, 1182, 1185 |
| Sau96I | GGNCC | 6 cut(s) | 415, 675, 875, 946, 1121, 1322 |
| SchI | GAGTC | 3 cut(s) | 50, 204, 233 |
| ScrFI | CCNGG | 4 cut(s) | 1139, 1216, 1326, 1404 |
| SexAI | ACCWGGT | 1 cut(s) | 1402 |
| SfaNI | GCATC | 2 cut(s) | 538, 539 |
| SfcI | CTRYAG | 3 cut(s) | 165, 1011, 1132 |
| Sfr274I | CTCGAG | 1 cut(s) | 240 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1040 |
| SinI | GGWCC | 3 cut(s) | 415, 875, 1121 |
| SlaI | CTCGAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 860 |
| SmlI | CTYRAG | 2 cut(s) | 240, 1412 |
| SmoI | CTYRAG | 2 cut(s) | 240, 1412 |
| Sse9I | AATT | 5 cut(s) | 62, 155, 394, 424, 1093 |
| SsiI | CCGC | 3 cut(s) | 649, 1044, 1182 |
| SspMI | CTAG | 1 cut(s) | 68 |
| StyD4I | CCNGG | 4 cut(s) | 1137, 1214, 1324, 1402 |
| StyI | CCWWGG | 2 cut(s) | 279, 1173 |
| TaaI | ACNGT | 6 cut(s) | 13, 37, 94, 373, 643, 1303 |
| TaiI | ACGT | 2 cut(s) | 127, 873 |
| TaqI | TCGA | 5 cut(s) | 205, 241, 462, 1383, 1387 |
| TasI | AATT | 5 cut(s) | 62, 155, 394, 424, 1093 |
| TauI | GCSGC | 1 cut(s) | 1184 |
| TfiI | GAWTC | 4 cut(s) | 595, 614, 718, 1001 |
| Tru1I | TTAA | 2 cut(s) | 555, 620 |
| Tru9I | TTAA | 2 cut(s) | 555, 620 |
| TscAI | CASTG | 6 cut(s) | 18, 40, 60, 636, 1306, 1312 |
| TseFI | GTSAC | 3 cut(s) | 55, 254, 1021 |
| TseI | GCWGC | 4 cut(s) | 732, 959, 1178, 1184 |
| Tsp45I | GTSAC | 3 cut(s) | 55, 254, 1021 |
| TspDTI | ATGAA | 7 cut(s) | 582, 627, 855, 878, 900, 1053, 1272 |
| TspRI | CASTG | 6 cut(s) | 18, 40, 60, 636, 1306, 1312 |
| Tth111I | GACNNNGTC | 2 cut(s) | 13, 1301 |
| VpaK11BI | GGWCC | 3 cut(s) | 415, 875, 1121 |
| VspI | ATTAAT | 1 cut(s) | 555 |
| XapI | RAATTY | 1 cut(s) | 62 |
| XbaI | TCTAGA | 1 cut(s) | 67 |
| XhoI | CTCGAG | 1 cut(s) | 240 |
| XmiI | GTMKAC | 1 cut(s) | 77 |
| XspI | CTAG | 1 cut(s) | 68 |