transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 198 | 6.1e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 689 |
| AclWI | GGATC | 1 cut(s) | 901 |
| AcsI | RAATTY | 4 cut(s) | 113, 416, 865, 921 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 291, 689 |
| AflII | CTTAAG | 1 cut(s) | 356 |
| AflIII | ACRYGT | 1 cut(s) | 343 |
| AgsI | TTSAA | 7 cut(s) | 197, 380, 401, 421, 602, 608, 706 |
| AhlI | ACTAGT | 1 cut(s) | 833 |
| AjnI | CCWGG | 3 cut(s) | 290, 682, 826 |
| AluBI | AGCT | 5 cut(s) | 128, 188, 374, 617, 810 |
| AluI | AGCT | 5 cut(s) | 128, 188, 374, 617, 810 |
| Alw21I | GWGCWC | 3 cut(s) | 42, 130, 223 |
| Alw26I | GTCTC | 2 cut(s) | 670, 763 |
| Alw44I | GTGCAC | 1 cut(s) | 219 |
| AlwI | GGATC | 1 cut(s) | 901 |
| ApaLI | GTGCAC | 1 cut(s) | 219 |
| ApeKI | GCWGC | 2 cut(s) | 188, 725 |
| ApoI | RAATTY | 4 cut(s) | 113, 416, 865, 921 |
| AsuHPI | GGTGA | 3 cut(s) | 135, 401, 918 |
| BaeGI | GKGCMC | 1 cut(s) | 223 |
| BanII | GRGCYC | 1 cut(s) | 130 |
| Bbv12I | GWGCWC | 3 cut(s) | 42, 130, 223 |
| BbvI | GCAGC | 2 cut(s) | 175, 712 |
| BccI | CCATC | 3 cut(s) | 116, 148, 158 |
| BciT130I | CCWGG | 3 cut(s) | 292, 684, 828 |
| BcoDI | GTCTC | 2 cut(s) | 670, 763 |
| BcuI | ACTAGT | 1 cut(s) | 833 |
| BfaI | CTAG | 3 cut(s) | 522, 557, 834 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BfrI | CTTAAG | 1 cut(s) | 356 |
| BisI | GCNGC | 2 cut(s) | 189, 726 |
| BlsI | GCNGC | 2 cut(s) | 190, 727 |
| Bme1390I | CCNGG | 3 cut(s) | 292, 684, 828 |
| BmrFI | CCNGG | 3 cut(s) | 292, 684, 828 |
| BmsI | GCATC | 4 cut(s) | 69, 240, 269, 791 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 296, 745 |
| BsaJI | CCNNGG | 3 cut(s) | 291, 683, 719 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 233, 263, 287, 317 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 291, 689 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| BseBI | CCWGG | 3 cut(s) | 292, 684, 828 |
| BseDI | CCNNGG | 3 cut(s) | 291, 683, 719 |
| BseGI | GGATG | 3 cut(s) | 231, 284, 785 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 291, 689 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 4 cut(s) | 162, 246, 354, 911 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseSI | GKGCMC | 1 cut(s) | 223 |
| BseXI | GCAGC | 2 cut(s) | 175, 712 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| Bsh1285I | CGRYCG | 1 cut(s) | 11 |
| BsiEI | CGRYCG | 1 cut(s) | 11 |
| BsiHKAI | GWGCWC | 3 cut(s) | 42, 130, 223 |
| BslFI | GGGAC | 1 cut(s) | 181 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 291, 689 |
| BsmAI | GTCTC | 2 cut(s) | 670, 763 |
| BsmFI | GGGAC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 130, 223 |
| Bsp143I | GATC | 4 cut(s) | 8, 553, 569, 893 |
| Bsp19I | CCATGG | 1 cut(s) | 719 |
| BspCNI | CTCAG | 4 cut(s) | 163, 247, 355, 910 |
| BspMAI | CTGCAG | 1 cut(s) | 589 |
| BspPI | GGATC | 1 cut(s) | 901 |
| BspQI | GCTCTTC | 2 cut(s) | 135, 201 |
| BspTI | CTTAAG | 1 cut(s) | 356 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BssECI | CCNNGG | 3 cut(s) | 291, 683, 719 |
| BssMI | GATC | 4 cut(s) | 8, 553, 569, 893 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2UI | CCWGG | 3 cut(s) | 292, 684, 828 |
| Bst4CI | ACNGT | 2 cut(s) | 218, 734 |
| Bst6I | CTCTTC | 2 cut(s) | 135, 201 |
| BstAFI | CTTAAG | 1 cut(s) | 356 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 734 |
| BstC8I | GCNNGC | 1 cut(s) | 107 |
| BstDEI | CTNAG | 5 cut(s) | 171, 255, 363, 674, 897 |
| BstDSI | CCRYGG | 1 cut(s) | 719 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 289 |
| BstF5I | GGATG | 3 cut(s) | 231, 284, 785 |
| BstKTI | GATC | 4 cut(s) | 11, 556, 572, 896 |
| BstMAI | GTCTC | 2 cut(s) | 670, 763 |
| BstMBI | GATC | 4 cut(s) | 8, 553, 569, 893 |
| BstMCI | CGRYCG | 1 cut(s) | 11 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 647, 734, 821 |
| BstNI | CCWGG | 3 cut(s) | 292, 684, 828 |
| BstNSI | RCATGY | 1 cut(s) | 347 |
| BstSCI | CCNGG | 3 cut(s) | 290, 682, 826 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstSLI | GKGCMC | 1 cut(s) | 223 |
| BstV1I | GCAGC | 2 cut(s) | 175, 712 |
| BstX2I | RGATCY | 1 cut(s) | 893 |
| BstYI | RGATCY | 1 cut(s) | 893 |
| BtgI | CCRYGG | 1 cut(s) | 719 |
| BtsCI | GGATG | 3 cut(s) | 231, 284, 785 |
| BtsI | GCAGTG | 1 cut(s) | 450 |
| BtsIMutI | CAGTG | 3 cut(s) | 223, 266, 450 |
| Cac8I | GCNNGC | 1 cut(s) | 107 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviAII | CATG | 4 cut(s) | 66, 101, 344, 720 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 5 cut(s) | 171, 255, 363, 674, 897 |
| DpnI | GATC | 4 cut(s) | 10, 555, 571, 895 |
| DpnII | GATC | 4 cut(s) | 8, 553, 569, 893 |
| Eam1104I | CTCTTC | 2 cut(s) | 135, 201 |
| EarI | CTCTTC | 2 cut(s) | 135, 201 |
| Ecl136II | GAGCTC | 1 cut(s) | 128 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco24I | GRGCYC | 1 cut(s) | 130 |
| Eco53kI | GAGCTC | 1 cut(s) | 128 |
| EcoICRI | GAGCTC | 1 cut(s) | 128 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 289 |
| EcoRII | CCWGG | 3 cut(s) | 290, 682, 826 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| EcoT38I | GRGCYC | 1 cut(s) | 130 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| FaeI | CATG | 4 cut(s) | 69, 104, 347, 723 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 310, 342 |
| FaqI | GGGAC | 1 cut(s) | 181 |
| FatI | CATG | 4 cut(s) | 65, 100, 343, 719 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 726 |
| FokI | GGATG | 3 cut(s) | 218, 291, 772 |
| FriOI | GRGCYC | 1 cut(s) | 130 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 726 |
| FspBI | CTAG | 3 cut(s) | 522, 557, 834 |
| GluI | GCNGC | 2 cut(s) | 189, 726 |
| Hin1II | CATG | 4 cut(s) | 69, 104, 347, 723 |
| HindIII | AAGCTT | 1 cut(s) | 615 |
| HinfI | GANTC | 3 cut(s) | 97, 309, 392 |
| HphI | GGTGA | 3 cut(s) | 135, 401, 918 |
| Hpy166II | GTNNAC | 3 cut(s) | 178, 221, 500 |
| Hpy188I | TCNGA | 6 cut(s) | 78, 163, 256, 569, 660, 769 |
| Hpy188III | TCNNGA | 2 cut(s) | 421, 908 |
| Hpy8I | GTNNAC | 3 cut(s) | 178, 221, 500 |
| HpyCH4III | ACNGT | 2 cut(s) | 218, 734 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 647, 734, 821 |
| HpyF3I | CTNAG | 5 cut(s) | 171, 255, 363, 674, 897 |
| Hsp92II | CATG | 4 cut(s) | 69, 104, 347, 723 |
| Kzo9I | GATC | 4 cut(s) | 8, 553, 569, 893 |
| LguI | GCTCTTC | 2 cut(s) | 135, 201 |
| LmnI | GCTCC | 3 cut(s) | 45, 125, 829 |
| LpnPI | CCDG | 7 cut(s) | 277, 304, 480, 669, 696, 813, 840 |
| Lsp1109I | GCAGC | 2 cut(s) | 175, 712 |
| LweI | GCATC | 4 cut(s) | 69, 240, 269, 791 |
| MaeI | CTAG | 3 cut(s) | 522, 557, 834 |
| MaeIII | GTNAC | 4 cut(s) | 366, 389, 627, 836 |
| MalI | GATC | 4 cut(s) | 10, 555, 571, 895 |
| MboI | GATC | 4 cut(s) | 8, 553, 569, 893 |
| MboII | GAAGA | 2 cut(s) | 122, 218 |
| MflI | RGATCY | 1 cut(s) | 893 |
| MhlI | GDGCHC | 3 cut(s) | 42, 130, 223 |
| MluCI | AATT | 8 cut(s) | 113, 416, 437, 528, 632, 772, 865, 921 |
| MlyI | GAGTC | 3 cut(s) | 106, 303, 386 |
| MseI | TTAA | 6 cut(s) | 156, 357, 413, 477, 485, 753 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspCI | CTTAAG | 1 cut(s) | 356 |
| MspR9I | CCNGG | 3 cut(s) | 292, 684, 828 |
| MvaI | CCWGG | 3 cut(s) | 292, 684, 828 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 647, 734, 821 |
| NcoI | CCATGG | 1 cut(s) | 719 |
| NdeII | GATC | 4 cut(s) | 8, 553, 569, 893 |
| NlaIII | CATG | 4 cut(s) | 69, 104, 347, 723 |
| NmuCI | GTSAC | 2 cut(s) | 389, 627 |
| NspI | RCATGY | 1 cut(s) | 347 |
| PciI | ACATGT | 1 cut(s) | 343 |
| PciSI | GCTCTTC | 2 cut(s) | 135, 201 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 689 |
| PfoI | TCCNGGA | 1 cut(s) | 826 |
| PkrI | GCNGC | 2 cut(s) | 190, 727 |
| Ple19I | CGATCG | 1 cut(s) | 11 |
| PleI | GAGTC | 3 cut(s) | 105, 303, 386 |
| PpsI | GAGTC | 3 cut(s) | 105, 303, 386 |
| PscI | ACATGT | 1 cut(s) | 343 |
| Psp124BI | GAGCTC | 1 cut(s) | 130 |
| Psp6I | CCWGG | 3 cut(s) | 290, 682, 826 |
| PspGI | CCWGG | 3 cut(s) | 290, 682, 826 |
| PstI | CTGCAG | 1 cut(s) | 589 |
| PsuI | RGATCY | 1 cut(s) | 893 |
| PvuI | CGATCG | 1 cut(s) | 11 |
| PvuII | CAGCTG | 1 cut(s) | 188 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| SacI | GAGCTC | 1 cut(s) | 130 |
| SapI | GCTCTTC | 2 cut(s) | 135, 201 |
| SaqAI | TTAA | 6 cut(s) | 156, 357, 413, 477, 485, 753 |
| SatI | GCNGC | 2 cut(s) | 189, 726 |
| Sau3AI | GATC | 4 cut(s) | 8, 553, 569, 893 |
| SchI | GAGTC | 3 cut(s) | 106, 303, 386 |
| ScrFI | CCNGG | 3 cut(s) | 292, 684, 828 |
| SduI | GDGCHC | 3 cut(s) | 42, 130, 223 |
| SfaNI | GCATC | 4 cut(s) | 69, 240, 269, 791 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 4 cut(s) | 44, 311, 356, 760 |
| SmoI | CTYRAG | 4 cut(s) | 44, 311, 356, 760 |
| SpeI | ACTAGT | 1 cut(s) | 833 |
| Sse9I | AATT | 8 cut(s) | 113, 416, 437, 528, 632, 772, 865, 921 |
| SspI | AATATT | 1 cut(s) | 550 |
| SspMI | CTAG | 3 cut(s) | 522, 557, 834 |
| SstI | GAGCTC | 1 cut(s) | 130 |
| StyD4I | CCNGG | 3 cut(s) | 290, 682, 826 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 2 cut(s) | 218, 734 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TasI | AATT | 8 cut(s) | 113, 416, 437, 528, 632, 772, 865, 921 |
| Tru1I | TTAA | 6 cut(s) | 156, 357, 413, 477, 485, 753 |
| Tru9I | TTAA | 6 cut(s) | 156, 357, 413, 477, 485, 753 |
| TscAI | CASTG | 3 cut(s) | 223, 273, 450 |
| TseFI | GTSAC | 2 cut(s) | 389, 627 |
| TseI | GCWGC | 2 cut(s) | 188, 725 |
| Tsp45I | GTSAC | 2 cut(s) | 389, 627 |
| TspGWI | ACGGA | 1 cut(s) | 855 |
| TspRI | CASTG | 3 cut(s) | 223, 273, 450 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 689 |
| Vha464I | CTTAAG | 1 cut(s) | 356 |
| VneI | GTGCAC | 1 cut(s) | 219 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 289 |
| XapI | RAATTY | 4 cut(s) | 113, 416, 865, 921 |
| XceI | RCATGY | 1 cut(s) | 347 |
| XspI | CTAG | 3 cut(s) | 522, 557, 834 |