Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 330 |
| AclI | AACGTT | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 286 |
| AflII | CTTAAG | 1 cut(s) | 113 |
| AgeI | ACCGGT | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 155, 400 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 2 cut(s) | 24, 341 |
| AluI | AGCT | 2 cut(s) | 24, 341 |
| Alw21I | GWGCWC | 1 cut(s) | 259 |
| ApeKI | GCWGC | 1 cut(s) | 332 |
| AsiGI | ACCGGT | 1 cut(s) | 89 |
| AspLEI | GCGC | 1 cut(s) | 112 |
| AspS9I | GGNCC | 2 cut(s) | 9, 61 |
| AsuHPI | GGTGA | 3 cut(s) | 44, 58, 200 |
| AvaII | GGWCC | 2 cut(s) | 9, 61 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 1 cut(s) | 259 |
| BbvI | GCAGC | 1 cut(s) | 319 |
| BceAI | ACGGC | 1 cut(s) | 374 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BfrI | CTTAAG | 1 cut(s) | 113 |
| BisI | GCNGC | 2 cut(s) | 330, 333 |
| BlsI | GCNGC | 2 cut(s) | 331, 334 |
| Bme18I | GGWCC | 2 cut(s) | 9, 61 |
| BmgT120I | GGNCC | 2 cut(s) | 9, 61 |
| BmiI | GGNNCC | 1 cut(s) | 10 |
| BmrI | ACTGGG | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 15 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 2 cut(s) | 321, 327 |
| Bsa29I | ATCGAT | 2 cut(s) | 204, 234 |
| BsaBI | GATNNNNATC | 1 cut(s) | 273 |
| BsaWI | WCCGGW | 1 cut(s) | 89 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 286 |
| Bse118I | RCCGGY | 2 cut(s) | 89, 251 |
| Bse1I | ACTGG | 1 cut(s) | 10 |
| Bse8I | GATNNNNATC | 1 cut(s) | 273 |
| BseCI | ATCGAT | 2 cut(s) | 204, 234 |
| BseJI | GATNNNNATC | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BseNI | ACTGG | 1 cut(s) | 10 |
| BseXI | GCAGC | 1 cut(s) | 319 |
| Bsh1285I | CGRYCG | 1 cut(s) | 94 |
| BshTI | ACCGGT | 1 cut(s) | 89 |
| BshVI | ATCGAT | 2 cut(s) | 204, 234 |
| BsiEI | CGRYCG | 1 cut(s) | 94 |
| BsiHKAI | GWGCWC | 1 cut(s) | 259 |
| BsiSI | CCGG | 2 cut(s) | 90, 252 |
| BslFI | GGGAC | 1 cut(s) | 291 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BsmFI | GGGAC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp143I | GATC | 2 cut(s) | 214, 274 |
| BspACI | CCGC | 1 cut(s) | 330 |
| BspDI | ATCGAT | 2 cut(s) | 204, 234 |
| BspHI | TCATGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 1 cut(s) | 10 |
| BspTI | CTTAAG | 1 cut(s) | 113 |
| BsrFI | RCCGGY | 2 cut(s) | 89, 251 |
| BsrI | ACTGG | 1 cut(s) | 10 |
| BssAI | RCCGGY | 2 cut(s) | 89, 251 |
| BssMI | GATC | 2 cut(s) | 214, 274 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| Bst6I | CTCTTC | 1 cut(s) | 54 |
| BstAFI | CTTAAG | 1 cut(s) | 113 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 1 cut(s) | 112 |
| BstKTI | GATC | 2 cut(s) | 217, 277 |
| BstMBI | GATC | 2 cut(s) | 214, 274 |
| BstMCI | CGRYCG | 1 cut(s) | 94 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 338 |
| BstV1I | GCAGC | 1 cut(s) | 319 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| Bsu15I | ATCGAT | 2 cut(s) | 204, 234 |
| BsuTUI | ATCGAT | 2 cut(s) | 204, 234 |
| BtsI | GCAGTG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 169 |
| CciI | TCATGA | 1 cut(s) | 313 |
| CfoI | GCGC | 1 cut(s) | 112 |
| Cfr10I | RCCGGY | 2 cut(s) | 89, 251 |
| Cfr13I | GGNCC | 2 cut(s) | 9, 61 |
| ClaI | ATCGAT | 2 cut(s) | 204, 234 |
| CspAI | ACCGGT | 1 cut(s) | 89 |
| CviAII | CATG | 1 cut(s) | 314 |
| CviJI | RGCY | 4 cut(s) | 24, 245, 341, 389 |
| CviKI_1 | RGCY | 4 cut(s) | 24, 245, 341, 389 |
| DpnI | GATC | 2 cut(s) | 216, 276 |
| DpnII | GATC | 2 cut(s) | 214, 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 54 |
| EarI | CTCTTC | 1 cut(s) | 54 |
| Eco47I | GGWCC | 2 cut(s) | 9, 61 |
| EcoO109I | RGGNCCY | 1 cut(s) | 61 |
| FaeI | CATG | 1 cut(s) | 317 |
| FaiI | YATR | 7 cut(s) | 57, 293, 315, 378, 380, 428, 430 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 291 |
| FatI | CATG | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 333 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 333 |
| GlaI | GCGC | 1 cut(s) | 111 |
| GluI | GCNGC | 2 cut(s) | 330, 333 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HapII | CCGG | 2 cut(s) | 90, 252 |
| HhaI | GCGC | 1 cut(s) | 112 |
| Hin1II | CATG | 1 cut(s) | 317 |
| Hin6I | GCGC | 1 cut(s) | 110 |
| HinP1I | GCGC | 1 cut(s) | 110 |
| HincII | GTYRAC | 1 cut(s) | 30 |
| HindII | GTYRAC | 1 cut(s) | 30 |
| HinfI | GANTC | 4 cut(s) | 118, 136, 191, 269 |
| HpaI | GTTAAC | 1 cut(s) | 30 |
| HpaII | CCGG | 2 cut(s) | 90, 252 |
| HphI | GGTGA | 3 cut(s) | 44, 58, 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 30 |
| Hpy188I | TCNGA | 3 cut(s) | 135, 268, 274 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 212, 314, 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 30 |
| Hpy99I | CGWCG | 2 cut(s) | 353, 374 |
| HpyAV | CCTTC | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 4 cut(s) | 300, 351, 369, 395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 338 |
| HpySE526I | ACGT | 4 cut(s) | 300, 351, 369, 395 |
| Hsp92II | CATG | 1 cut(s) | 317 |
| HspAI | GCGC | 1 cut(s) | 110 |
| KspAI | GTTAAC | 1 cut(s) | 30 |
| Kzo9I | GATC | 2 cut(s) | 214, 274 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 3 cut(s) | 103, 196, 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 319 |
| MaeII | ACGT | 4 cut(s) | 300, 351, 369, 395 |
| MaeIII | GTNAC | 3 cut(s) | 95, 391, 418 |
| MalI | GATC | 2 cut(s) | 216, 276 |
| MboI | GATC | 2 cut(s) | 214, 274 |
| MboII | GAAGA | 3 cut(s) | 41, 140, 143 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MlyI | GAGTC | 1 cut(s) | 112 |
| MnlI | CCTC | 1 cut(s) | 74 |
| MseI | TTAA | 3 cut(s) | 29, 114, 222 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspCI | CTTAAG | 1 cut(s) | 113 |
| MspI | CCGG | 2 cut(s) | 90, 252 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 338 |
| NdeII | GATC | 2 cut(s) | 214, 274 |
| NlaIII | CATG | 1 cut(s) | 317 |
| NlaIV | GGNNCC | 1 cut(s) | 10 |
| NmuCI | GTSAC | 2 cut(s) | 95, 391 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PagI | TCATGA | 1 cut(s) | 313 |
| PfeI | GAWTC | 3 cut(s) | 136, 191, 269 |
| PflFI | GACNNNGTC | 1 cut(s) | 7 |
| PinAI | ACCGGT | 1 cut(s) | 89 |
| PkrI | GCNGC | 2 cut(s) | 331, 334 |
| PleI | GAGTC | 1 cut(s) | 112 |
| PpsI | GAGTC | 1 cut(s) | 112 |
| PpuMI | RGGWCCY | 1 cut(s) | 61 |
| Psp1406I | AACGTT | 1 cut(s) | 300 |
| Psp5II | RGGWCCY | 1 cut(s) | 61 |
| PspN4I | GGNNCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 2 cut(s) | 9, 61 |
| PspPPI | RGGWCCY | 1 cut(s) | 61 |
| PsyI | GACNNNGTC | 1 cut(s) | 7 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SaqAI | TTAA | 3 cut(s) | 29, 114, 222 |
| SatI | GCNGC | 2 cut(s) | 330, 333 |
| Sau3AI | GATC | 2 cut(s) | 214, 274 |
| Sau96I | GGNCC | 2 cut(s) | 9, 61 |
| SchI | GAGTC | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SetI | ASST | 9 cut(s) | 26, 63, 185, 303, 343, 354, 365, 372, 398 |
| SinI | GGWCC | 2 cut(s) | 9, 61 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| SmlI | CTYRAG | 3 cut(s) | 113, 336, 342 |
| SmoI | CTYRAG | 3 cut(s) | 113, 336, 342 |
| SsiI | CCGC | 1 cut(s) | 330 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaiI | ACGT | 4 cut(s) | 303, 354, 372, 398 |
| TaqI | TCGA | 2 cut(s) | 204, 234 |
| TauI | GCSGC | 1 cut(s) | 332 |
| TfiI | GAWTC | 3 cut(s) | 136, 191, 269 |
| Tru1I | TTAA | 3 cut(s) | 29, 114, 222 |
| Tru9I | TTAA | 3 cut(s) | 29, 114, 222 |
| TscAI | CASTG | 1 cut(s) | 169 |
| TseFI | GTSAC | 2 cut(s) | 95, 391 |
| TseI | GCWGC | 1 cut(s) | 332 |
| Tsp45I | GTSAC | 2 cut(s) | 95, 391 |
| TspDTI | ATGAA | 4 cut(s) | 187, 302, 308, 330 |
| TspRI | CASTG | 1 cut(s) | 169 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7 |
| Vha464I | CTTAAG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 2 cut(s) | 9, 61 |