gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 755 |
| AcoI | YGGCCR | 2 cut(s) | 160, 1228 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 304, 505 |
| AflII | CTTAAG | 1 cut(s) | 491 |
| AflIII | ACRYGT | 1 cut(s) | 787 |
| AluBI | AGCT | 7 cut(s) | 238, 277, 474, 569, 602, 606, 612 |
| AluI | AGCT | 7 cut(s) | 238, 277, 474, 569, 602, 606, 612 |
| Alw21I | GWGCWC | 1 cut(s) | 715 |
| Alw26I | GTCTC | 1 cut(s) | 1176 |
| AoxI | GGCC | 3 cut(s) | 160, 1203, 1228 |
| ApeKI | GCWGC | 6 cut(s) | 274, 437, 474, 509, 670, 805 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 133, 165 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 890 |
| AspA2I | CCTAGG | 1 cut(s) | 13 |
| AspLEI | GCGC | 1 cut(s) | 463 |
| AspS9I | GGNCC | 2 cut(s) | 998, 1203 |
| AsuHPI | GGTGA | 3 cut(s) | 726, 738, 878 |
| AsuNHI | GCTAGC | 1 cut(s) | 602 |
| AvaII | GGWCC | 1 cut(s) | 998 |
| AvrII | CCTAGG | 1 cut(s) | 13 |
| AxyI | CCTNAGG | 1 cut(s) | 299 |
| BalI | TGGCCA | 2 cut(s) | 162, 1230 |
| BbsI | GAAGAC | 1 cut(s) | 413 |
| Bbv12I | GWGCWC | 1 cut(s) | 715 |
| BbvI | GCAGC | 6 cut(s) | 286, 424, 461, 496, 682, 817 |
| BccI | CCATC | 5 cut(s) | 38, 80, 631, 806, 937 |
| BclI | TGATCA | 1 cut(s) | 868 |
| BcoDI | GTCTC | 1 cut(s) | 1176 |
| BfaI | CTAG | 4 cut(s) | 14, 603, 609, 924 |
| BfmI | CTRYAG | 5 cut(s) | 272, 426, 510, 803, 1255 |
| BfrI | CTTAAG | 1 cut(s) | 491 |
| BisI | GCNGC | 6 cut(s) | 275, 438, 475, 510, 671, 806 |
| BlnI | CCTAGG | 1 cut(s) | 13 |
| BlsI | GCNGC | 6 cut(s) | 276, 439, 476, 511, 672, 807 |
| Bme18I | GGWCC | 1 cut(s) | 998 |
| BmgT120I | GGNCC | 2 cut(s) | 998, 1203 |
| BmiI | GGNNCC | 2 cut(s) | 91, 1204 |
| BmrI | ACTGGG | 1 cut(s) | 1209 |
| BmsI | GCATC | 2 cut(s) | 346, 841 |
| BmtI | GCTAGC | 1 cut(s) | 606 |
| BmuI | ACTGGG | 1 cut(s) | 1209 |
| BpiI | GAAGAC | 1 cut(s) | 413 |
| BpuEI | CTTGAG | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 360, 561 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 366, 396 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 304, 505 |
| Bse118I | RCCGGY | 1 cut(s) | 1089 |
| Bse1I | ACTGG | 4 cut(s) | 128, 749, 1042, 1204 |
| Bse21I | CCTNAGG | 1 cut(s) | 299 |
| Bse3DI | GCAATG | 2 cut(s) | 689, 1231 |
| BseDI | CCNNGG | 3 cut(s) | 13, 360, 561 |
| BseGI | GGATG | 5 cut(s) | 267, 542, 623, 659, 798 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 304, 505 |
| BseMI | GCAATG | 2 cut(s) | 689, 1231 |
| BseMII | CTCAG | 9 cut(s) | 80, 290, 404, 473, 642, 678, 707, 909, 1308 |
| BseNI | ACTGG | 4 cut(s) | 128, 749, 1042, 1204 |
| BseXI | GCAGC | 6 cut(s) | 286, 424, 461, 496, 682, 817 |
| BsgI | GTGCAG | 2 cut(s) | 689, 1295 |
| BshFI | GGCC | 3 cut(s) | 162, 1205, 1230 |
| BsiHKAI | GWGCWC | 1 cut(s) | 715 |
| BsiSI | CCGG | 1 cut(s) | 1090 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 304, 505 |
| BsmAI | GTCTC | 1 cut(s) | 1176 |
| BsnI | GGCC | 3 cut(s) | 162, 1205, 1230 |
| Bsp1286I | GDGCHC | 1 cut(s) | 715 |
| Bsp143I | GATC | 1 cut(s) | 868 |
| Bsp19I | CCATGG | 1 cut(s) | 561 |
| BspANI | GGCC | 3 cut(s) | 162, 1205, 1230 |
| BspCNI | CTCAG | 9 cut(s) | 79, 291, 405, 474, 641, 677, 706, 908, 1309 |
| BspLI | GGNNCC | 2 cut(s) | 91, 1204 |
| BspMAI | CTGCAG | 4 cut(s) | 276, 430, 514, 807 |
| BspOI | GCTAGC | 1 cut(s) | 606 |
| BspQI | GCTCTTC | 1 cut(s) | 720 |
| BspTI | CTTAAG | 1 cut(s) | 491 |
| BsrDI | GCAATG | 2 cut(s) | 689, 1231 |
| BsrFI | RCCGGY | 1 cut(s) | 1089 |
| BsrI | ACTGG | 4 cut(s) | 128, 749, 1042, 1204 |
| BssAI | RCCGGY | 1 cut(s) | 1089 |
| BssECI | CCNNGG | 3 cut(s) | 13, 360, 561 |
| BssMI | GATC | 1 cut(s) | 868 |
| BssT1I | CCWWGG | 3 cut(s) | 13, 360, 561 |
| Bst4CI | ACNGT | 4 cut(s) | 370, 409, 822, 1273 |
| Bst6I | CTCTTC | 2 cut(s) | 720, 1311 |
| BstAFI | CTTAAG | 1 cut(s) | 491 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 356, 434 |
| BstC8I | GCNNGC | 1 cut(s) | 604 |
| BstDEI | CTNAG | 9 cut(s) | 66, 299, 413, 482, 628, 664, 693, 895, 1317 |
| BstDSI | CCRYGG | 1 cut(s) | 561 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 302, 503 |
| BstF5I | GGATG | 5 cut(s) | 267, 542, 623, 659, 798 |
| BstHHI | GCGC | 1 cut(s) | 463 |
| BstKTI | GATC | 1 cut(s) | 871 |
| BstMAI | GTCTC | 1 cut(s) | 1176 |
| BstMBI | GATC | 1 cut(s) | 868 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 188, 356, 434, 566, 679, 703, 719, 1095, 1144 |
| BstNSI | RCATGY | 1 cut(s) | 791 |
| BstSFI | CTRYAG | 5 cut(s) | 272, 426, 510, 803, 1255 |
| BstV1I | GCAGC | 6 cut(s) | 286, 424, 461, 496, 682, 817 |
| BstV2I | GAAGAC | 1 cut(s) | 413 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 146 |
| Bsu36I | CCTNAGG | 1 cut(s) | 299 |
| BsuRI | GGCC | 3 cut(s) | 162, 1205, 1230 |
| BtgI | CCRYGG | 1 cut(s) | 561 |
| BtsCI | GGATG | 5 cut(s) | 267, 542, 623, 659, 798 |
| BtsI | GCAGTG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 7 cut(s) | 479, 555, 672, 756, 1035, 1197, 1269 |
| Cac8I | GCNNGC | 1 cut(s) | 604 |
| CfoI | GCGC | 1 cut(s) | 463 |
| Cfr10I | RCCGGY | 1 cut(s) | 1089 |
| Cfr13I | GGNCC | 2 cut(s) | 998, 1203 |
| DdeI | CTNAG | 9 cut(s) | 66, 299, 413, 482, 628, 664, 693, 895, 1317 |
| DpnI | GATC | 1 cut(s) | 870 |
| DpnII | GATC | 1 cut(s) | 868 |
| EaeI | YGGCCR | 2 cut(s) | 160, 1228 |
| Eam1104I | CTCTTC | 2 cut(s) | 720, 1311 |
| EarI | CTCTTC | 2 cut(s) | 720, 1311 |
| Eco130I | CCWWGG | 3 cut(s) | 13, 360, 561 |
| Eco47I | GGWCC | 1 cut(s) | 998 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| Eco81I | CCTNAGG | 1 cut(s) | 299 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 302, 503 |
| EcoT14I | CCWWGG | 3 cut(s) | 13, 360, 561 |
| ErhI | CCWWGG | 3 cut(s) | 13, 360, 561 |
| FauNDI | CATATG | 1 cut(s) | 841 |
| FbaI | TGATCA | 1 cut(s) | 868 |
| FblI | GTMKAC | 1 cut(s) | 755 |
| Fnu4HI | GCNGC | 6 cut(s) | 275, 438, 475, 510, 671, 806 |
| FokI | GGATG | 5 cut(s) | 254, 529, 610, 646, 785 |
| Fsp4HI | GCNGC | 6 cut(s) | 275, 438, 475, 510, 671, 806 |
| FspBI | CTAG | 4 cut(s) | 14, 603, 609, 924 |
| GlaI | GCGC | 1 cut(s) | 462 |
| GluI | GCNGC | 6 cut(s) | 275, 438, 475, 510, 671, 806 |
| HaeIII | GGCC | 3 cut(s) | 162, 1205, 1230 |
| HapII | CCGG | 1 cut(s) | 1090 |
| HhaI | GCGC | 1 cut(s) | 463 |
| Hin6I | GCGC | 1 cut(s) | 461 |
| HinP1I | GCGC | 1 cut(s) | 461 |
| HincII | GTYRAC | 1 cut(s) | 121 |
| HindII | GTYRAC | 1 cut(s) | 121 |
| HinfI | GANTC | 2 cut(s) | 533, 1141 |
| HpaII | CCGG | 1 cut(s) | 1090 |
| HphI | GGTGA | 3 cut(s) | 726, 738, 878 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 756 |
| Hpy188I | TCNGA | 6 cut(s) | 85, 219, 414, 873, 1267, 1318 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 332 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 756 |
| HpyAV | CCTTC | 5 cut(s) | 71, 298, 299, 509, 901 |
| HpyCH4III | ACNGT | 4 cut(s) | 370, 409, 822, 1273 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 188, 356, 434, 566, 679, 703, 719, 1095, 1144 |
| HpyF3I | CTNAG | 9 cut(s) | 66, 299, 413, 482, 628, 664, 693, 895, 1317 |
| HspAI | GCGC | 1 cut(s) | 461 |
| Ksp22I | TGATCA | 1 cut(s) | 868 |
| Kzo9I | GATC | 1 cut(s) | 868 |
| LguI | GCTCTTC | 1 cut(s) | 720 |
| LmnI | GCTCC | 3 cut(s) | 599, 965, 1115 |
| Lsp1109I | GCAGC | 6 cut(s) | 286, 424, 461, 496, 682, 817 |
| LweI | GCATC | 2 cut(s) | 346, 841 |
| MaeI | CTAG | 4 cut(s) | 14, 603, 609, 924 |
| MaeIII | GTNAC | 3 cut(s) | 149, 403, 980 |
| MalI | GATC | 1 cut(s) | 870 |
| MboI | GATC | 1 cut(s) | 868 |
| MboII | GAAGA | 4 cut(s) | 72, 413, 707, 1298 |
| MhlI | GDGCHC | 1 cut(s) | 715 |
| MlsI | TGGCCA | 2 cut(s) | 162, 1230 |
| MluCI | AATT | 3 cut(s) | 441, 464, 516 |
| MluNI | TGGCCA | 2 cut(s) | 162, 1230 |
| MmeI | TCCRAC | 2 cut(s) | 309, 352 |
| Mox20I | TGGCCA | 2 cut(s) | 162, 1230 |
| MroXI | GAANNNNTTC | 1 cut(s) | 890 |
| MscI | TGGCCA | 2 cut(s) | 162, 1230 |
| MseI | TTAA | 2 cut(s) | 444, 492 |
| MslI | CAYNNNNRTG | 3 cut(s) | 560, 584, 776 |
| Msp20I | TGGCCA | 2 cut(s) | 162, 1230 |
| MspA1I | CMGCKG | 1 cut(s) | 277 |
| MspCI | CTTAAG | 1 cut(s) | 491 |
| MspI | CCGG | 1 cut(s) | 1090 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 188, 356, 434, 566, 679, 703, 719, 1095, 1144 |
| NcoI | CCATGG | 1 cut(s) | 561 |
| NdeI | CATATG | 1 cut(s) | 841 |
| NdeII | GATC | 1 cut(s) | 868 |
| NheI | GCTAGC | 1 cut(s) | 602 |
| NlaIV | GGNNCC | 2 cut(s) | 91, 1204 |
| NmuCI | GTSAC | 1 cut(s) | 149 |
| NspI | RCATGY | 1 cut(s) | 791 |
| PciI | ACATGT | 1 cut(s) | 787 |
| PciSI | GCTCTTC | 1 cut(s) | 720 |
| PdmI | GAANNNNTTC | 1 cut(s) | 890 |
| PfeI | GAWTC | 2 cut(s) | 533, 1141 |
| PflFI | GACNNNGTC | 1 cut(s) | 116 |
| PkrI | GCNGC | 6 cut(s) | 276, 439, 476, 511, 672, 807 |
| PscI | ACATGT | 1 cut(s) | 787 |
| PspN4I | GGNNCC | 2 cut(s) | 91, 1204 |
| PspPI | GGNCC | 2 cut(s) | 998, 1203 |
| PstI | CTGCAG | 4 cut(s) | 276, 430, 514, 807 |
| PsyI | GACNNNGTC | 1 cut(s) | 116 |
| PvuII | CAGCTG | 1 cut(s) | 277 |
| RseI | CAYNNNNRTG | 3 cut(s) | 560, 584, 776 |
| SapI | GCTCTTC | 1 cut(s) | 720 |
| SaqAI | TTAA | 2 cut(s) | 444, 492 |
| SatI | GCNGC | 6 cut(s) | 275, 438, 475, 510, 671, 806 |
| Sau3AI | GATC | 1 cut(s) | 868 |
| Sau96I | GGNCC | 2 cut(s) | 998, 1203 |
| SduI | GDGCHC | 1 cut(s) | 715 |
| SfaNI | GCATC | 2 cut(s) | 346, 841 |
| SfcI | CTRYAG | 5 cut(s) | 272, 426, 510, 803, 1255 |
| SinI | GGWCC | 1 cut(s) | 998 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 560, 584, 776 |
| SmlI | CTYRAG | 2 cut(s) | 491, 503 |
| SmoI | CTYRAG | 2 cut(s) | 491, 503 |
| Sse9I | AATT | 3 cut(s) | 441, 464, 516 |
| SspI | AATATT | 1 cut(s) | 145 |
| SspMI | CTAG | 4 cut(s) | 14, 603, 609, 924 |
| StyI | CCWWGG | 3 cut(s) | 13, 360, 561 |
| TaaI | ACNGT | 4 cut(s) | 370, 409, 822, 1273 |
| TasI | AATT | 3 cut(s) | 441, 464, 516 |
| TfiI | GAWTC | 2 cut(s) | 533, 1141 |
| Tru1I | TTAA | 2 cut(s) | 444, 492 |
| Tru9I | TTAA | 2 cut(s) | 444, 492 |
| TscAI | CASTG | 7 cut(s) | 486, 562, 672, 756, 1042, 1204, 1276 |
| TseFI | GTSAC | 1 cut(s) | 149 |
| TseI | GCWGC | 6 cut(s) | 274, 437, 474, 509, 670, 805 |
| Tsp45I | GTSAC | 1 cut(s) | 149 |
| TspDTI | ATGAA | 5 cut(s) | 546, 707, 872, 899, 1178 |
| TspRI | CASTG | 7 cut(s) | 486, 562, 672, 756, 1042, 1204, 1276 |
| Tth111I | GACNNNGTC | 1 cut(s) | 116 |
| Vha464I | CTTAAG | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 1 cut(s) | 998 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 302, 503 |
| XceI | RCATGY | 1 cut(s) | 791 |
| XmaJI | CCTAGG | 1 cut(s) | 13 |
| XmiI | GTMKAC | 1 cut(s) | 755 |
| XmnI | GAANNNNTTC | 1 cut(s) | 890 |
| XspI | CTAG | 4 cut(s) | 14, 603, 609, 924 |