GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 651 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 855 |
| AciI | CCGC | 1 cut(s) | 56 |
| AclWI | GGATC | 2 cut(s) | 36, 380 |
| AcsI | RAATTY | 1 cut(s) | 302 |
| AfaI | GTAC | 3 cut(s) | 127, 365, 493 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 542, 569 |
| AgsI | TTSAA | 4 cut(s) | 100, 233, 703, 713 |
| AjnI | CCWGG | 2 cut(s) | 784, 793 |
| AluBI | AGCT | 3 cut(s) | 394, 398, 863 |
| AluI | AGCT | 3 cut(s) | 394, 398, 863 |
| Alw26I | GTCTC | 1 cut(s) | 645 |
| AlwI | GGATC | 2 cut(s) | 36, 380 |
| AoxI | GGCC | 1 cut(s) | 688 |
| ApeKI | GCWGC | 3 cut(s) | 398, 401, 752 |
| ApoI | RAATTY | 1 cut(s) | 302 |
| AsuC2I | CCSGG | 1 cut(s) | 15 |
| AsuHPI | GGTGA | 3 cut(s) | 205, 338, 519 |
| AsuNHI | GCTAGC | 1 cut(s) | 394 |
| BbvI | GCAGC | 3 cut(s) | 385, 388, 739 |
| BccI | CCATC | 1 cut(s) | 172 |
| BciT130I | CCWGG | 2 cut(s) | 786, 795 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BclI | TGATCA | 1 cut(s) | 115 |
| BcnI | CCSGG | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 645 |
| BfaI | CTAG | 2 cut(s) | 384, 395 |
| BfmI | CTRYAG | 1 cut(s) | 905 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BisI | GCNGC | 3 cut(s) | 399, 402, 753 |
| BlsI | GCNGC | 3 cut(s) | 400, 403, 754 |
| Bme1390I | CCNGG | 3 cut(s) | 15, 786, 795 |
| BmrFI | CCNGG | 3 cut(s) | 15, 786, 795 |
| BmsI | GCATC | 2 cut(s) | 349, 473 |
| BmtI | GCTAGC | 1 cut(s) | 398 |
| BpmI | CTGGAG | 1 cut(s) | 52 |
| BpuEI | CTTGAG | 2 cut(s) | 549, 876 |
| BpuMI | CCSGG | 1 cut(s) | 15 |
| Bsa29I | ATCGAT | 1 cut(s) | 82 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 1 cut(s) | 541 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 542, 569 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| Bse3DI | GCAATG | 1 cut(s) | 8 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseBI | CCWGG | 2 cut(s) | 786, 795 |
| BseCI | ATCGAT | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 541 |
| BseGI | GGATG | 1 cut(s) | 164 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 542, 569 |
| BseMI | GCAATG | 1 cut(s) | 8 |
| BseMII | CTCAG | 5 cut(s) | 312, 593, 626, 656, 821 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BseXI | GCAGC | 3 cut(s) | 385, 388, 739 |
| BshFI | GGCC | 1 cut(s) | 690 |
| BshVI | ATCGAT | 1 cut(s) | 82 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 542, 569 |
| BsmAI | GTCTC | 1 cut(s) | 645 |
| BsnI | GGCC | 1 cut(s) | 690 |
| Bsp143I | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 690 |
| BspCNI | CTCAG | 5 cut(s) | 313, 592, 625, 655, 820 |
| BspDI | ATCGAT | 1 cut(s) | 82 |
| BspOI | GCTAGC | 1 cut(s) | 398 |
| BspPI | GGATC | 2 cut(s) | 36, 380 |
| BsrDI | GCAATG | 1 cut(s) | 8 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 1 cut(s) | 541 |
| BssMI | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| BssT1I | CCWWGG | 1 cut(s) | 541 |
| Bst2UI | CCWGG | 2 cut(s) | 786, 795 |
| Bst4CI | ACNGT | 5 cut(s) | 193, 334, 633, 707, 909 |
| Bst6I | CTCTTC | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 3 cut(s) | 396, 682, 831 |
| BstDEI | CTNAG | 6 cut(s) | 321, 579, 585, 612, 642, 807 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 567 |
| BstF5I | GGATG | 1 cut(s) | 164 |
| BstKTI | GATC | 7 cut(s) | 44, 82, 118, 178, 241, 375, 391 |
| BstMAI | GTCTC | 1 cut(s) | 645 |
| BstMBI | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 517 |
| BstNI | CCWGG | 2 cut(s) | 786, 795 |
| BstNSI | RCATGY | 2 cut(s) | 762, 901 |
| BstSCI | CCNGG | 3 cut(s) | 13, 784, 793 |
| BstSFI | CTRYAG | 1 cut(s) | 905 |
| BstV1I | GCAGC | 3 cut(s) | 385, 388, 739 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| Bsu15I | ATCGAT | 1 cut(s) | 82 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 1 cut(s) | 690 |
| BsuTUI | ATCGAT | 1 cut(s) | 82 |
| BtsCI | GGATG | 1 cut(s) | 164 |
| BtsI | GCAGTG | 1 cut(s) | 506 |
| BtsIMutI | CAGTG | 2 cut(s) | 443, 506 |
| Cac8I | GCNNGC | 3 cut(s) | 396, 682, 831 |
| ClaI | ATCGAT | 1 cut(s) | 82 |
| Csp6I | GTAC | 3 cut(s) | 126, 364, 492 |
| CviJI | RGCY | 7 cut(s) | 23, 162, 394, 398, 646, 690, 863 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 162, 394, 398, 646, 690, 863 |
| CviQI | GTAC | 3 cut(s) | 126, 364, 492 |
| DdeI | CTNAG | 6 cut(s) | 321, 579, 585, 612, 642, 807 |
| DpnI | GATC | 7 cut(s) | 43, 81, 117, 177, 240, 374, 390 |
| DpnII | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 855 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 855 |
| Eam1104I | CTCTTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 567 |
| EcoRII | CCWGG | 2 cut(s) | 784, 793 |
| EcoT14I | CCWWGG | 1 cut(s) | 541 |
| ErhI | CCWWGG | 1 cut(s) | 541 |
| FbaI | TGATCA | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 3 cut(s) | 399, 402, 753 |
| FokI | GGATG | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 399, 402, 753 |
| FspBI | CTAG | 2 cut(s) | 384, 395 |
| GluI | GCNGC | 3 cut(s) | 399, 402, 753 |
| GsuI | CTGGAG | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 690 |
| HapII | CCGG | 1 cut(s) | 14 |
| HinfI | GANTC | 7 cut(s) | 143, 206, 277, 317, 380, 475, 874 |
| HpaII | CCGG | 1 cut(s) | 14 |
| HphI | GGTGA | 3 cut(s) | 205, 338, 519 |
| Hpy166II | GTNNAC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 6 cut(s) | 180, 322, 358, 421, 615, 726 |
| Hpy188III | TCNNGA | 3 cut(s) | 39, 113, 384 |
| Hpy8I | GTNNAC | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 1 cut(s) | 126 |
| HpyAV | CCTTC | 2 cut(s) | 245, 306 |
| HpyCH4III | ACNGT | 5 cut(s) | 193, 334, 633, 707, 909 |
| HpyCH4V | TGCA | 4 cut(s) | 188, 443, 464, 698 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 517 |
| HpyF3I | CTNAG | 6 cut(s) | 321, 579, 585, 612, 642, 807 |
| Ksp22I | TGATCA | 1 cut(s) | 115 |
| Kzo9I | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| LpnPI | CCDG | 9 cut(s) | 27, 82, 390, 771, 780, 794, 798, 807, 843 |
| Lsp1109I | GCAGC | 3 cut(s) | 385, 388, 739 |
| LweI | GCATC | 2 cut(s) | 349, 473 |
| MaeI | CTAG | 2 cut(s) | 384, 395 |
| MaeIII | GTNAC | 4 cut(s) | 217, 409, 525, 731 |
| MalI | GATC | 7 cut(s) | 43, 81, 117, 177, 240, 374, 390 |
| MboI | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| MboII | GAAGA | 4 cut(s) | 55, 338, 795, 810 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MluCI | AATT | 4 cut(s) | 100, 261, 302, 435 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MmeI | TCCRAC | 3 cut(s) | 228, 234, 627 |
| MnlI | CCTC | 6 cut(s) | 40, 301, 316, 418, 563, 573 |
| MseI | TTAA | 1 cut(s) | 498 |
| MspI | CCGG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 3 cut(s) | 15, 786, 795 |
| MvaI | CCWGG | 2 cut(s) | 786, 795 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 517 |
| NciI | CCSGG | 1 cut(s) | 15 |
| NdeII | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| NheI | GCTAGC | 1 cut(s) | 394 |
| NmuCI | GTSAC | 2 cut(s) | 525, 731 |
| NspI | RCATGY | 2 cut(s) | 762, 901 |
| PfeI | GAWTC | 6 cut(s) | 143, 206, 277, 317, 475, 874 |
| PfoI | TCCNGGA | 2 cut(s) | 784, 793 |
| PkrI | GCNGC | 3 cut(s) | 400, 403, 754 |
| PleI | GAGTC | 1 cut(s) | 388 |
| PpsI | GAGTC | 1 cut(s) | 388 |
| PsiI | TTATAA | 1 cut(s) | 651 |
| Psp6I | CCWGG | 2 cut(s) | 784, 793 |
| PspGI | CCWGG | 2 cut(s) | 784, 793 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 118, 150 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| RsaI | GTAC | 3 cut(s) | 127, 365, 493 |
| RsaNI | GTAC | 3 cut(s) | 126, 364, 492 |
| SaqAI | TTAA | 1 cut(s) | 498 |
| SatI | GCNGC | 3 cut(s) | 399, 402, 753 |
| Sau3AI | GATC | 7 cut(s) | 41, 79, 115, 175, 238, 372, 388 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 3 cut(s) | 15, 786, 795 |
| SetI | ASST | 6 cut(s) | 396, 400, 484, 547, 574, 865 |
| SfaNI | GCATC | 2 cut(s) | 349, 473 |
| SfcI | CTRYAG | 1 cut(s) | 905 |
| SmlI | CTYRAG | 2 cut(s) | 564, 891 |
| SmoI | CTYRAG | 2 cut(s) | 564, 891 |
| Sse9I | AATT | 4 cut(s) | 100, 261, 302, 435 |
| SsiI | CCGC | 1 cut(s) | 56 |
| SspI | AATATT | 1 cut(s) | 184 |
| SspMI | CTAG | 2 cut(s) | 384, 395 |
| StyD4I | CCNGG | 3 cut(s) | 13, 784, 793 |
| StyI | CCWWGG | 1 cut(s) | 541 |
| TaaI | ACNGT | 5 cut(s) | 193, 334, 633, 707, 909 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TasI | AATT | 4 cut(s) | 100, 261, 302, 435 |
| TfiI | GAWTC | 6 cut(s) | 143, 206, 277, 317, 475, 874 |
| Tru1I | TTAA | 1 cut(s) | 498 |
| Tru9I | TTAA | 1 cut(s) | 498 |
| TscAI | CASTG | 2 cut(s) | 450, 513 |
| TseFI | GTSAC | 2 cut(s) | 525, 731 |
| TseI | GCWGC | 3 cut(s) | 398, 401, 752 |
| Tsp45I | GTSAC | 2 cut(s) | 525, 731 |
| TspDTI | ATGAA | 2 cut(s) | 488, 810 |
| TspGWI | ACGGA | 1 cut(s) | 157 |
| TspRI | CASTG | 2 cut(s) | 450, 513 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 567 |
| XapI | RAATTY | 1 cut(s) | 302 |
| XbaI | TCTAGA | 1 cut(s) | 383 |
| XceI | RCATGY | 2 cut(s) | 762, 901 |
| XspI | CTAG | 2 cut(s) | 384, 395 |