gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 528 |
| Acc36I | ACCTGC | 1 cut(s) | 305 |
| AccI | GTMKAC | 1 cut(s) | 439 |
| AccIII | TCCGGA | 1 cut(s) | 655 |
| AciI | CCGC | 1 cut(s) | 315 |
| AclWI | GGATC | 2 cut(s) | 469, 483 |
| AfaI | GTAC | 4 cut(s) | 197, 295, 423, 680 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 346 |
| AgsI | TTSAA | 3 cut(s) | 50, 90, 763 |
| AjnI | CCWGG | 1 cut(s) | 136 |
| AluBI | AGCT | 4 cut(s) | 59, 736, 817, 862 |
| AluI | AGCT | 4 cut(s) | 59, 736, 817, 862 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Alw26I | GTCTC | 1 cut(s) | 695 |
| AlwI | GGATC | 2 cut(s) | 469, 483 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 215 |
| Aor13HI | TCCGGA | 1 cut(s) | 655 |
| AoxI | GGCC | 1 cut(s) | 63 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| AspA2I | CCTAGG | 1 cut(s) | 745 |
| AspS9I | GGNCC | 3 cut(s) | 118, 289, 710 |
| AsuHPI | GGTGA | 4 cut(s) | 87, 304, 545, 615 |
| AvaII | GGWCC | 3 cut(s) | 118, 289, 710 |
| AvrII | CCTAGG | 1 cut(s) | 745 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BbvCI | CCTCAGC | 2 cut(s) | 60, 99 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BccI | CCATC | 2 cut(s) | 486, 762 |
| BceAI | ACGGC | 1 cut(s) | 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 416, 450 |
| BciT130I | CCWGG | 1 cut(s) | 138 |
| BciVI | GTATCC | 1 cut(s) | 663 |
| BclI | TGATCA | 1 cut(s) | 10 |
| BcoDI | GTCTC | 1 cut(s) | 695 |
| BfaI | CTAG | 1 cut(s) | 746 |
| BfmI | CTRYAG | 2 cut(s) | 179, 443 |
| BfuAI | ACCTGC | 1 cut(s) | 305 |
| BfuI | GTATCC | 1 cut(s) | 663 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlnI | CCTAGG | 1 cut(s) | 745 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 1 cut(s) | 138 |
| Bme18I | GGWCC | 3 cut(s) | 118, 289, 710 |
| BmgT120I | GGNCC | 3 cut(s) | 118, 289, 710 |
| BmiI | GGNNCC | 3 cut(s) | 120, 290, 355 |
| BmrFI | CCNGG | 1 cut(s) | 138 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| Bpu10I | CCTNAGC | 2 cut(s) | 60, 99 |
| BpuEI | CTTGAG | 4 cut(s) | 407, 473, 797, 851 |
| BsaJI | CCNNGG | 2 cut(s) | 614, 745 |
| BsaWI | WCCGGW | 1 cut(s) | 655 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 346 |
| Bse1I | ACTGG | 2 cut(s) | 120, 173 |
| BseAI | TCCGGA | 1 cut(s) | 655 |
| BseBI | CCWGG | 1 cut(s) | 138 |
| BseDI | CCNNGG | 2 cut(s) | 614, 745 |
| BseGI | GGATG | 3 cut(s) | 497, 502, 696 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 346 |
| BseMII | CTCAG | 5 cut(s) | 51, 69, 113, 207, 261 |
| BseNI | ACTGG | 2 cut(s) | 120, 173 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| BseYI | CCCAGC | 1 cut(s) | 262 |
| BshFI | GGCC | 1 cut(s) | 65 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BsiSI | CCGG | 2 cut(s) | 301, 656 |
| BslFI | GGGAC | 2 cut(s) | 104, 302 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 346 |
| BsmAI | GTCTC | 1 cut(s) | 695 |
| BsmFI | GGGAC | 2 cut(s) | 104, 302 |
| BsmI | GAATGC | 2 cut(s) | 619, 638 |
| BsnI | GGCC | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp13I | TCCGGA | 1 cut(s) | 655 |
| Bsp143I | GATC | 4 cut(s) | 10, 461, 475, 499 |
| BspACI | CCGC | 1 cut(s) | 315 |
| BspANI | GGCC | 1 cut(s) | 65 |
| BspCNI | CTCAG | 5 cut(s) | 52, 68, 112, 208, 260 |
| BspEI | TCCGGA | 1 cut(s) | 655 |
| BspLI | GGNNCC | 3 cut(s) | 120, 290, 355 |
| BspMI | ACCTGC | 1 cut(s) | 305 |
| BspPI | GGATC | 2 cut(s) | 469, 483 |
| BsrI | ACTGG | 2 cut(s) | 120, 173 |
| BssECI | CCNNGG | 2 cut(s) | 614, 745 |
| BssMI | GATC | 4 cut(s) | 10, 461, 475, 499 |
| BssT1I | CCWWGG | 1 cut(s) | 745 |
| Bst2UI | CCWGG | 1 cut(s) | 138 |
| Bst4CI | ACNGT | 1 cut(s) | 293 |
| BstC8I | GCNNGC | 4 cut(s) | 734, 806, 827, 860 |
| BstDEI | CTNAG | 5 cut(s) | 55, 60, 99, 216, 247 |
| BstDSI | CCRYGG | 1 cut(s) | 614 |
| BstF5I | GGATG | 3 cut(s) | 497, 502, 696 |
| BstKTI | GATC | 4 cut(s) | 13, 464, 478, 502 |
| BstMAI | GTCTC | 1 cut(s) | 695 |
| BstMBI | GATC | 4 cut(s) | 10, 461, 475, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 750, 814 |
| BstNI | CCWGG | 1 cut(s) | 138 |
| BstSCI | CCNGG | 1 cut(s) | 136 |
| BstSFI | CTRYAG | 2 cut(s) | 179, 443 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 250 |
| BsuI | GTATCC | 1 cut(s) | 663 |
| BsuRI | GGCC | 1 cut(s) | 65 |
| BtgI | CCRYGG | 1 cut(s) | 614 |
| BtsCI | GGATG | 3 cut(s) | 497, 502, 696 |
| BtsI | GCAGTG | 1 cut(s) | 220 |
| BtsIMutI | CAGTG | 4 cut(s) | 113, 213, 220, 255 |
| BveI | ACCTGC | 1 cut(s) | 305 |
| Cac8I | GCNNGC | 4 cut(s) | 734, 806, 827, 860 |
| CaiI | CAGNNNCTG | 1 cut(s) | 215 |
| Cfr13I | GGNCC | 3 cut(s) | 118, 289, 710 |
| CseI | GACGC | 2 cut(s) | 380, 457 |
| Csp6I | GTAC | 4 cut(s) | 196, 294, 422, 679 |
| CviAII | CATG | 1 cut(s) | 419 |
| CviQI | GTAC | 4 cut(s) | 196, 294, 422, 679 |
| DdeI | CTNAG | 5 cut(s) | 55, 60, 99, 216, 247 |
| DpnI | GATC | 4 cut(s) | 12, 463, 477, 501 |
| DpnII | GATC | 4 cut(s) | 10, 461, 475, 499 |
| Eco130I | CCWWGG | 1 cut(s) | 745 |
| Eco47I | GGWCC | 3 cut(s) | 118, 289, 710 |
| EcoRII | CCWGG | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 1 cut(s) | 745 |
| ErhI | CCWWGG | 1 cut(s) | 745 |
| FaeI | CATG | 1 cut(s) | 422 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 755, 787 |
| FaqI | GGGAC | 2 cut(s) | 104, 302 |
| FatI | CATG | 1 cut(s) | 418 |
| FbaI | TGATCA | 1 cut(s) | 10 |
| FblI | GTMKAC | 1 cut(s) | 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FokI | GGATG | 3 cut(s) | 504, 509, 703 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| FspBI | CTAG | 1 cut(s) | 746 |
| GluI | GCNGC | 1 cut(s) | 402 |
| GsaI | CCCAGC | 1 cut(s) | 266 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 1 cut(s) | 65 |
| HapII | CCGG | 2 cut(s) | 301, 656 |
| HgaI | GACGC | 2 cut(s) | 380, 457 |
| Hin1II | CATG | 1 cut(s) | 422 |
| HincII | GTYRAC | 2 cut(s) | 440, 468 |
| HindII | GTYRAC | 2 cut(s) | 440, 468 |
| HindIII | AAGCTT | 3 cut(s) | 734, 815, 860 |
| HinfI | GANTC | 3 cut(s) | 433, 553, 568 |
| HpaII | CCGG | 2 cut(s) | 301, 656 |
| HphI | GGTGA | 4 cut(s) | 87, 304, 545, 615 |
| Hpy166II | GTNNAC | 3 cut(s) | 168, 440, 468 |
| Hpy188I | TCNGA | 1 cut(s) | 328 |
| Hpy188III | TCNNGA | 6 cut(s) | 376, 386, 545, 656, 698, 868 |
| Hpy8I | GTNNAC | 3 cut(s) | 168, 440, 468 |
| Hpy99I | CGWCG | 2 cut(s) | 396, 441 |
| HpyAV | CCTTC | 2 cut(s) | 96, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 293 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 332, 427, 804, 825, 858 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 750, 814 |
| HpyF3I | CTNAG | 5 cut(s) | 55, 60, 99, 216, 247 |
| Hsp92II | CATG | 1 cut(s) | 422 |
| Kpn2I | TCCGGA | 1 cut(s) | 655 |
| Ksp22I | TGATCA | 1 cut(s) | 10 |
| Kzo9I | GATC | 4 cut(s) | 10, 461, 475, 499 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeI | CTAG | 1 cut(s) | 746 |
| MaeIII | GTNAC | 1 cut(s) | 581 |
| MalI | GATC | 4 cut(s) | 12, 463, 477, 501 |
| MboI | GATC | 4 cut(s) | 10, 461, 475, 499 |
| MboII | GAAGA | 1 cut(s) | 775 |
| MfeI | CAATTG | 5 cut(s) | 74, 428, 778, 799, 853 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MlyI | GAGTC | 2 cut(s) | 442, 577 |
| MnlI | CCTC | 5 cut(s) | 55, 108, 332, 798, 819 |
| MroI | TCCGGA | 1 cut(s) | 655 |
| MseI | TTAA | 2 cut(s) | 281, 845 |
| MspA1I | CMGCKG | 1 cut(s) | 59 |
| MspI | CCGG | 2 cut(s) | 301, 656 |
| MspR9I | CCNGG | 1 cut(s) | 138 |
| MunI | CAATTG | 5 cut(s) | 74, 428, 778, 799, 853 |
| Mva1269I | GAATGC | 2 cut(s) | 619, 638 |
| MvaI | CCWGG | 1 cut(s) | 138 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 750, 814 |
| NdeII | GATC | 4 cut(s) | 10, 461, 475, 499 |
| NlaIII | CATG | 1 cut(s) | 422 |
| NlaIV | GGNNCC | 3 cut(s) | 120, 290, 355 |
| NmeAIII | GCCGAG | 1 cut(s) | 589 |
| PctI | GAATGC | 2 cut(s) | 619, 638 |
| PfeI | GAWTC | 1 cut(s) | 553 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PleI | GAGTC | 2 cut(s) | 441, 576 |
| PpsI | GAGTC | 2 cut(s) | 441, 576 |
| PsiI | TTATAA | 1 cut(s) | 528 |
| Psp6I | CCWGG | 1 cut(s) | 136 |
| PspFI | CCCAGC | 1 cut(s) | 262 |
| PspGI | CCWGG | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 3 cut(s) | 120, 290, 355 |
| PspPI | GGNCC | 3 cut(s) | 118, 289, 710 |
| PstNI | CAGNNNCTG | 1 cut(s) | 215 |
| PvuII | CAGCTG | 1 cut(s) | 59 |
| RsaI | GTAC | 4 cut(s) | 197, 295, 423, 680 |
| RsaNI | GTAC | 4 cut(s) | 196, 294, 422, 679 |
| SalI | GTCGAC | 1 cut(s) | 438 |
| SaqAI | TTAA | 2 cut(s) | 281, 845 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 4 cut(s) | 10, 461, 475, 499 |
| Sau96I | GGNCC | 3 cut(s) | 118, 289, 710 |
| SchI | GAGTC | 2 cut(s) | 442, 577 |
| ScrFI | CCNGG | 1 cut(s) | 138 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfcI | CTRYAG | 2 cut(s) | 179, 443 |
| SinI | GGWCC | 3 cut(s) | 118, 289, 710 |
| SmlI | CTYRAG | 4 cut(s) | 386, 452, 812, 866 |
| SmoI | CTYRAG | 4 cut(s) | 386, 452, 812, 866 |
| SsiI | CCGC | 1 cut(s) | 315 |
| SspMI | CTAG | 1 cut(s) | 746 |
| StyD4I | CCNGG | 1 cut(s) | 136 |
| StyI | CCWWGG | 1 cut(s) | 745 |
| TaaI | ACNGT | 1 cut(s) | 293 |
| TaqI | TCGA | 1 cut(s) | 439 |
| TaqII | GACCGA | 1 cut(s) | 727 |
| TatI | WGTACW | 2 cut(s) | 421, 678 |
| TfiI | GAWTC | 1 cut(s) | 553 |
| Tru1I | TTAA | 2 cut(s) | 281, 845 |
| Tru9I | TTAA | 2 cut(s) | 281, 845 |
| TscAI | CASTG | 4 cut(s) | 120, 220, 227, 255 |
| TseI | GCWGC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspGWI | ACGGA | 1 cut(s) | 603 |
| TspRI | CASTG | 4 cut(s) | 120, 220, 227, 255 |
| VpaK11BI | GGWCC | 3 cut(s) | 118, 289, 710 |
| XmaJI | CCTAGG | 1 cut(s) | 745 |
| XmiI | GTMKAC | 1 cut(s) | 439 |
| XspI | CTAG | 1 cut(s) | 746 |