NPH3 family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 175 |
| AgsI | TTSAA | 5 cut(s) | 32, 137, 212, 221, 284 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| AlwI | GGATC | 1 cut(s) | 175 |
| ApeKI | GCWGC | 2 cut(s) | 263, 266 |
| AspLEI | GCGC | 1 cut(s) | 309 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BbvI | GCAGC | 2 cut(s) | 253, 275 |
| BccI | CCATC | 1 cut(s) | 158 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BfmI | CTRYAG | 2 cut(s) | 9, 267 |
| BisI | GCNGC | 2 cut(s) | 264, 267 |
| BlsI | GCNGC | 2 cut(s) | 265, 268 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 1 cut(s) | 142 |
| BseDI | CCNNGG | 1 cut(s) | 142 |
| BseGI | GGATG | 2 cut(s) | 94, 250 |
| BseXI | GCAGC | 2 cut(s) | 253, 275 |
| Bsp143I | GATC | 4 cut(s) | 13, 39, 167, 253 |
| Bsp19I | CCATGG | 1 cut(s) | 142 |
| BspMAI | CTGCAG | 1 cut(s) | 271 |
| BspPI | GGATC | 1 cut(s) | 175 |
| BssECI | CCNNGG | 1 cut(s) | 142 |
| BssMI | GATC | 4 cut(s) | 13, 39, 167, 253 |
| BssT1I | CCWWGG | 1 cut(s) | 142 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 61, 79 |
| BstDEI | CTNAG | 1 cut(s) | 185 |
| BstDSI | CCRYGG | 1 cut(s) | 142 |
| BstF5I | GGATG | 2 cut(s) | 94, 250 |
| BstHHI | GCGC | 1 cut(s) | 309 |
| BstKTI | GATC | 4 cut(s) | 16, 42, 170, 256 |
| BstMBI | GATC | 4 cut(s) | 13, 39, 167, 253 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 267 |
| BstV1I | GCAGC | 2 cut(s) | 253, 275 |
| BtgI | CCRYGG | 1 cut(s) | 142 |
| BtsCI | GGATG | 2 cut(s) | 94, 250 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| CfoI | GCGC | 1 cut(s) | 309 |
| CviAII | CATG | 1 cut(s) | 143 |
| CviJI | RGCY | 2 cut(s) | 141, 266 |
| CviKI_1 | RGCY | 2 cut(s) | 141, 266 |
| DdeI | CTNAG | 1 cut(s) | 185 |
| DpnI | GATC | 4 cut(s) | 15, 41, 169, 255 |
| DpnII | GATC | 4 cut(s) | 13, 39, 167, 253 |
| Eco130I | CCWWGG | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 1 cut(s) | 142 |
| ErhI | CCWWGG | 1 cut(s) | 142 |
| FaeI | CATG | 1 cut(s) | 146 |
| FaiI | YATR | 2 cut(s) | 144, 149 |
| FatI | CATG | 1 cut(s) | 142 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 2 cut(s) | 264, 267 |
| FokI | GGATG | 2 cut(s) | 101, 257 |
| Fsp4HI | GCNGC | 2 cut(s) | 264, 267 |
| GlaI | GCGC | 1 cut(s) | 308 |
| GluI | GCNGC | 2 cut(s) | 264, 267 |
| HhaI | GCGC | 1 cut(s) | 309 |
| Hin1II | CATG | 1 cut(s) | 146 |
| Hin6I | GCGC | 1 cut(s) | 307 |
| HinP1I | GCGC | 1 cut(s) | 307 |
| HinfI | GANTC | 2 cut(s) | 92, 200 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 205 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 171 |
| HpyAV | CCTTC | 1 cut(s) | 206 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 61, 79 |
| HpyCH4V | TGCA | 3 cut(s) | 248, 263, 269 |
| HpyF3I | CTNAG | 1 cut(s) | 185 |
| Hsp92II | CATG | 1 cut(s) | 146 |
| HspAI | GCGC | 1 cut(s) | 307 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| Kzo9I | GATC | 4 cut(s) | 13, 39, 167, 253 |
| LpnPI | CCDG | 1 cut(s) | 255 |
| Lsp1109I | GCAGC | 2 cut(s) | 253, 275 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeIII | GTNAC | 2 cut(s) | 4, 73 |
| MalI | GATC | 4 cut(s) | 15, 41, 169, 255 |
| MboI | GATC | 4 cut(s) | 13, 39, 167, 253 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MfeI | CAATTG | 1 cut(s) | 17 |
| MluCI | AATT | 4 cut(s) | 17, 24, 207, 300 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 1 cut(s) | 66 |
| MnlI | CCTC | 2 cut(s) | 59, 192 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MunI | CAATTG | 1 cut(s) | 17 |
| NcoI | CCATGG | 1 cut(s) | 142 |
| NdeII | GATC | 4 cut(s) | 13, 39, 167, 253 |
| NlaIII | CATG | 1 cut(s) | 146 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 2 cut(s) | 265, 268 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| PstI | CTGCAG | 1 cut(s) | 271 |
| PvuII | CAGCTG | 1 cut(s) | 266 |
| SatI | GCNGC | 2 cut(s) | 264, 267 |
| Sau3AI | GATC | 4 cut(s) | 13, 39, 167, 253 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SetI | ASST | 2 cut(s) | 51, 268 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 2 cut(s) | 9, 267 |
| SgeI | CNNG | 9 cut(s) | 120, 136, 146, 155, 183, 253, 261, 272, 282 |
| Sse9I | AATT | 4 cut(s) | 17, 24, 207, 300 |
| StyI | CCWWGG | 1 cut(s) | 142 |
| TaaI | ACNGT | 3 cut(s) | 10, 61, 79 |
| TasI | AATT | 4 cut(s) | 17, 24, 207, 300 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 84 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| TseI | GCWGC | 2 cut(s) | 263, 266 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspRI | CASTG | 1 cut(s) | 84 |