gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 206 | 1.2e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 991 |
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AccI | GTMKAC | 1 cut(s) | 1331 |
| AclWI | GGATC | 1 cut(s) | 1018 |
| AcsI | RAATTY | 4 cut(s) | 49, 95, 444, 1029 |
| AcuI | CTGAAG | 1 cut(s) | 1227 |
| AfaI | GTAC | 5 cut(s) | 212, 238, 389, 425, 700 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 331, 439, 552 |
| AflII | CTTAAG | 1 cut(s) | 329 |
| AgsI | TTSAA | 8 cut(s) | 46, 60, 582, 913, 1039, 1215, 1310, 1342 |
| AjnI | CCWGG | 1 cut(s) | 89 |
| AluBI | AGCT | 7 cut(s) | 19, 373, 457, 570, 916, 1118, 1298 |
| AluI | AGCT | 7 cut(s) | 19, 373, 457, 570, 916, 1118, 1298 |
| Alw21I | GWGCWC | 1 cut(s) | 572 |
| Alw26I | GTCTC | 4 cut(s) | 101, 505, 656, 822 |
| AlwI | GGATC | 1 cut(s) | 1018 |
| AoxI | GGCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 6 cut(s) | 257, 533, 674, 1055, 1075, 1295 |
| ApoI | RAATTY | 4 cut(s) | 49, 95, 444, 1029 |
| AsuHPI | GGTGA | 2 cut(s) | 626, 695 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 877, 910 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BanII | GRGCYC | 1 cut(s) | 572 |
| BbsI | GAAGAC | 1 cut(s) | 1046 |
| Bbv12I | GWGCWC | 1 cut(s) | 572 |
| BbvI | GCAGC | 6 cut(s) | 244, 520, 661, 1067, 1087, 1307 |
| BccI | CCATC | 3 cut(s) | 140, 529, 920 |
| BceAI | ACGGC | 1 cut(s) | 1164 |
| BciT130I | CCWGG | 1 cut(s) | 91 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcoDI | GTCTC | 4 cut(s) | 101, 505, 656, 822 |
| BfaI | CTAG | 1 cut(s) | 167 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfrI | CTTAAG | 1 cut(s) | 329 |
| BfuAI | ACCTGC | 1 cut(s) | 991 |
| BglII | AGATCT | 1 cut(s) | 596 |
| BisI | GCNGC | 6 cut(s) | 258, 534, 675, 1056, 1076, 1296 |
| BlsI | GCNGC | 6 cut(s) | 259, 535, 676, 1057, 1077, 1297 |
| BmcAI | AGTACT | 1 cut(s) | 425 |
| Bme1390I | CCNGG | 1 cut(s) | 91 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmrFI | CCNGG | 1 cut(s) | 91 |
| BmsI | GCATC | 2 cut(s) | 1013, 1120 |
| BpiI | GAAGAC | 1 cut(s) | 1046 |
| BpuEI | CTTGAG | 2 cut(s) | 1086, 1268 |
| BsaI | GGTCTC | 1 cut(s) | 822 |
| BsaJI | CCNNGG | 1 cut(s) | 780 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 795, 825 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 331, 439, 552 |
| Bse1I | ACTGG | 3 cut(s) | 64, 270, 1048 |
| BseBI | CCWGG | 1 cut(s) | 91 |
| BseDI | CCNNGG | 1 cut(s) | 780 |
| BseGI | GGATG | 3 cut(s) | 393, 487, 1154 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 331, 439, 552 |
| BseMII | CTCAG | 4 cut(s) | 516, 557, 931, 1245 |
| BseNI | ACTGG | 3 cut(s) | 64, 270, 1048 |
| BseXI | GCAGC | 6 cut(s) | 244, 520, 661, 1067, 1087, 1307 |
| BsgI | GTGCAG | 2 cut(s) | 245, 1074 |
| BshFI | GGCC | 1 cut(s) | 129 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 572 |
| BslFI | GGGAC | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 331, 439, 552 |
| BsmAI | GTCTC | 4 cut(s) | 101, 505, 656, 822 |
| BsmFI | GGGAC | 1 cut(s) | 147 |
| BsmI | GAATGC | 2 cut(s) | 1129, 1283 |
| BsnI | GGCC | 1 cut(s) | 129 |
| Bso31I | GGTCTC | 1 cut(s) | 822 |
| Bsp1286I | GDGCHC | 1 cut(s) | 572 |
| Bsp1407I | TGTACA | 1 cut(s) | 387 |
| Bsp143I | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| BspANI | GGCC | 1 cut(s) | 129 |
| BspCNI | CTCAG | 4 cut(s) | 515, 558, 930, 1246 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspMI | ACCTGC | 1 cut(s) | 991 |
| BspPI | GGATC | 1 cut(s) | 1018 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BspTI | CTTAAG | 1 cut(s) | 329 |
| BspTNI | GGTCTC | 1 cut(s) | 822 |
| BsrGI | TGTACA | 1 cut(s) | 387 |
| BsrI | ACTGG | 3 cut(s) | 64, 270, 1048 |
| BssECI | CCNNGG | 1 cut(s) | 780 |
| BssMI | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| BssT1I | CCWWGG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 1 cut(s) | 91 |
| Bst4CI | ACNGT | 4 cut(s) | 357, 703, 872, 1052 |
| Bst6I | CTCTTC | 2 cut(s) | 1101, 1198 |
| BstAFI | CTTAAG | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 206 |
| BstAUI | TGTACA | 1 cut(s) | 387 |
| BstC8I | GCNNGC | 1 cut(s) | 459 |
| BstDEI | CTNAG | 5 cut(s) | 502, 566, 917, 1254, 1317 |
| BstF5I | GGATG | 3 cut(s) | 393, 487, 1154 |
| BstKTI | GATC | 5 cut(s) | 454, 540, 599, 1013, 1262 |
| BstMAI | GTCTC | 4 cut(s) | 101, 505, 656, 822 |
| BstMBI | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 206, 533, 674, 1075, 1124 |
| BstNI | CCWGG | 1 cut(s) | 91 |
| BstNSI | RCATGY | 1 cut(s) | 681 |
| BstSCI | CCNGG | 1 cut(s) | 89 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 6 cut(s) | 244, 520, 661, 1067, 1087, 1307 |
| BstV2I | GAAGAC | 1 cut(s) | 1046 |
| BstX2I | RGATCY | 2 cut(s) | 596, 1010 |
| BstYI | RGATCY | 2 cut(s) | 596, 1010 |
| BsuRI | GGCC | 1 cut(s) | 129 |
| BtgZI | GCGATG | 1 cut(s) | 1036 |
| BtsCI | GGATG | 3 cut(s) | 393, 487, 1154 |
| BtsIMutI | CAGTG | 2 cut(s) | 510, 1057 |
| BveI | ACCTGC | 1 cut(s) | 991 |
| Cac8I | GCNNGC | 1 cut(s) | 459 |
| Csp6I | GTAC | 5 cut(s) | 211, 237, 388, 424, 699 |
| CviAII | CATG | 6 cut(s) | 206, 214, 678, 821, 1274, 1327 |
| CviQI | GTAC | 5 cut(s) | 211, 237, 388, 424, 699 |
| DdeI | CTNAG | 5 cut(s) | 502, 566, 917, 1254, 1317 |
| DpnI | GATC | 5 cut(s) | 453, 539, 598, 1012, 1261 |
| DpnII | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| Eam1104I | CTCTTC | 2 cut(s) | 1101, 1198 |
| EarI | CTCTTC | 2 cut(s) | 1101, 1198 |
| Ecl136II | GAGCTC | 1 cut(s) | 570 |
| Eco130I | CCWWGG | 1 cut(s) | 780 |
| Eco24I | GRGCYC | 1 cut(s) | 572 |
| Eco31I | GGTCTC | 1 cut(s) | 822 |
| Eco53kI | GAGCTC | 1 cut(s) | 570 |
| Eco57I | CTGAAG | 1 cut(s) | 1227 |
| EcoICRI | GAGCTC | 1 cut(s) | 570 |
| EcoRII | CCWGG | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 780 |
| EcoT38I | GRGCYC | 1 cut(s) | 572 |
| ErhI | CCWWGG | 1 cut(s) | 780 |
| FaeI | CATG | 6 cut(s) | 209, 217, 681, 824, 1277, 1330 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 289, 321, 970, 1002 |
| FaqI | GGGAC | 1 cut(s) | 147 |
| FatI | CATG | 6 cut(s) | 205, 213, 677, 820, 1273, 1326 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| FblI | GTMKAC | 1 cut(s) | 1331 |
| Fnu4HI | GCNGC | 6 cut(s) | 258, 534, 675, 1056, 1076, 1296 |
| FokI | GGATG | 3 cut(s) | 380, 494, 1141 |
| FriOI | GRGCYC | 1 cut(s) | 572 |
| Fsp4HI | GCNGC | 6 cut(s) | 258, 534, 675, 1056, 1076, 1296 |
| FspBI | CTAG | 1 cut(s) | 167 |
| GluI | GCNGC | 6 cut(s) | 258, 534, 675, 1056, 1076, 1296 |
| HaeIII | GGCC | 1 cut(s) | 129 |
| Hin1II | CATG | 6 cut(s) | 209, 217, 681, 824, 1277, 1330 |
| HincII | GTYRAC | 2 cut(s) | 40, 760 |
| HindII | GTYRAC | 2 cut(s) | 40, 760 |
| HinfI | GANTC | 5 cut(s) | 74, 410, 435, 909, 1169 |
| HphI | GGTGA | 2 cut(s) | 626, 695 |
| Hpy166II | GTNNAC | 4 cut(s) | 40, 734, 760, 1332 |
| Hpy188I | TCNGA | 7 cut(s) | 409, 434, 567, 745, 925, 1255, 1264 |
| Hpy188III | TCNNGA | 5 cut(s) | 397, 693, 990, 1008, 1103 |
| Hpy8I | GTNNAC | 4 cut(s) | 40, 734, 760, 1332 |
| HpyAV | CCTTC | 2 cut(s) | 295, 1141 |
| HpyCH4III | ACNGT | 4 cut(s) | 357, 703, 872, 1052 |
| HpyCH4V | TGCA | 9 cut(s) | 200, 226, 677, 832, 952, 1004, 1055, 1069, 1295 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 206, 533, 674, 1075, 1124 |
| HpyF3I | CTNAG | 5 cut(s) | 502, 566, 917, 1254, 1317 |
| Hsp92II | CATG | 6 cut(s) | 209, 217, 681, 824, 1277, 1330 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| Kzo9I | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 2 cut(s) | 16, 575 |
| Lsp1109I | GCAGC | 6 cut(s) | 244, 520, 661, 1067, 1087, 1307 |
| LweI | GCATC | 2 cut(s) | 1013, 1120 |
| MaeI | CTAG | 1 cut(s) | 167 |
| MaeIII | GTNAC | 3 cut(s) | 85, 750, 1046 |
| MalI | GATC | 5 cut(s) | 453, 539, 598, 1012, 1261 |
| MboI | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| MboII | GAAGA | 8 cut(s) | 197, 500, 629, 1051, 1118, 1126, 1185, 1191 |
| MflI | RGATCY | 2 cut(s) | 596, 1010 |
| MhlI | GDGCHC | 1 cut(s) | 572 |
| MluCI | AATT | 9 cut(s) | 25, 49, 95, 444, 590, 739, 865, 1029, 1305 |
| MlyI | GAGTC | 3 cut(s) | 68, 404, 444 |
| MmeI | TCCRAC | 1 cut(s) | 274 |
| MnlI | CCTC | 6 cut(s) | 391, 689, 797, 984, 1261, 1292 |
| MseI | TTAA | 5 cut(s) | 116, 330, 510, 558, 593 |
| MspCI | CTTAAG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 1 cut(s) | 91 |
| Mva1269I | GAATGC | 2 cut(s) | 1129, 1283 |
| MvaI | CCWGG | 1 cut(s) | 91 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 206, 533, 674, 1075, 1124 |
| NdeII | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| NlaIII | CATG | 6 cut(s) | 209, 217, 681, 824, 1277, 1330 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NmuCI | GTSAC | 2 cut(s) | 750, 1046 |
| NspI | RCATGY | 1 cut(s) | 681 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PctI | GAATGC | 2 cut(s) | 1129, 1283 |
| PfeI | GAWTC | 2 cut(s) | 909, 1169 |
| PkrI | GCNGC | 6 cut(s) | 259, 535, 676, 1057, 1077, 1297 |
| PleI | GAGTC | 3 cut(s) | 68, 404, 443 |
| PpsI | GAGTC | 3 cut(s) | 68, 404, 443 |
| Psp124BI | GAGCTC | 1 cut(s) | 572 |
| Psp6I | CCWGG | 1 cut(s) | 89 |
| PspGI | CCWGG | 1 cut(s) | 89 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PsuI | RGATCY | 2 cut(s) | 596, 1010 |
| RsaI | GTAC | 5 cut(s) | 212, 238, 389, 425, 700 |
| RsaNI | GTAC | 5 cut(s) | 211, 237, 388, 424, 699 |
| SacI | GAGCTC | 1 cut(s) | 572 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 5 cut(s) | 116, 330, 510, 558, 593 |
| SatI | GCNGC | 6 cut(s) | 258, 534, 675, 1056, 1076, 1296 |
| Sau3AI | GATC | 5 cut(s) | 451, 537, 596, 1010, 1259 |
| ScaI | AGTACT | 1 cut(s) | 425 |
| SchI | GAGTC | 3 cut(s) | 68, 404, 444 |
| ScrFI | CCNGG | 1 cut(s) | 91 |
| SduI | GDGCHC | 1 cut(s) | 572 |
| SfaNI | GCATC | 2 cut(s) | 1013, 1120 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SmlI | CTYRAG | 3 cut(s) | 329, 1101, 1283 |
| SmoI | CTYRAG | 3 cut(s) | 329, 1101, 1283 |
| Sse9I | AATT | 9 cut(s) | 25, 49, 95, 444, 590, 739, 865, 1029, 1305 |
| SspMI | CTAG | 1 cut(s) | 167 |
| SstI | GAGCTC | 1 cut(s) | 572 |
| StyD4I | CCNGG | 1 cut(s) | 89 |
| StyI | CCWWGG | 1 cut(s) | 780 |
| TaaI | ACNGT | 4 cut(s) | 357, 703, 872, 1052 |
| TaqI | TCGA | 3 cut(s) | 775, 793, 991 |
| TasI | AATT | 9 cut(s) | 25, 49, 95, 444, 590, 739, 865, 1029, 1305 |
| TatI | WGTACW | 3 cut(s) | 236, 387, 423 |
| TfiI | GAWTC | 2 cut(s) | 909, 1169 |
| Tru1I | TTAA | 5 cut(s) | 116, 330, 510, 558, 593 |
| Tru9I | TTAA | 5 cut(s) | 116, 330, 510, 558, 593 |
| TscAI | CASTG | 2 cut(s) | 510, 1057 |
| TseFI | GTSAC | 2 cut(s) | 750, 1046 |
| TseI | GCWGC | 6 cut(s) | 257, 533, 674, 1055, 1075, 1295 |
| Tsp45I | GTSAC | 2 cut(s) | 750, 1046 |
| TspRI | CASTG | 2 cut(s) | 510, 1057 |
| Vha464I | CTTAAG | 1 cut(s) | 329 |
| XapI | RAATTY | 4 cut(s) | 49, 95, 444, 1029 |
| XceI | RCATGY | 1 cut(s) | 681 |
| XmiI | GTMKAC | 1 cut(s) | 1331 |
| XspI | CTAG | 1 cut(s) | 167 |
| ZrmI | AGTACT | 1 cut(s) | 425 |