gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 63 | 5.3e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 117 |
| AciI | CCGC | 1 cut(s) | 412 |
| AjnI | CCWGG | 1 cut(s) | 416 |
| AluBI | AGCT | 3 cut(s) | 134, 142, 458 |
| AluI | AGCT | 3 cut(s) | 134, 142, 458 |
| Alw21I | GWGCWC | 2 cut(s) | 31, 460 |
| Alw44I | GTGCAC | 1 cut(s) | 27 |
| AoxI | GGCC | 3 cut(s) | 148, 274, 419 |
| ApaLI | GTGCAC | 1 cut(s) | 27 |
| AspLEI | GCGC | 2 cut(s) | 117, 119 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 1 cut(s) | 31 |
| BanII | GRGCYC | 1 cut(s) | 460 |
| Bbv12I | GWGCWC | 2 cut(s) | 31, 460 |
| BccI | CCATC | 2 cut(s) | 221, 331 |
| BceAI | ACGGC | 1 cut(s) | 2 |
| BciT130I | CCWGG | 1 cut(s) | 418 |
| Bme1390I | CCNGG | 1 cut(s) | 418 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmrFI | CCNGG | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 3 cut(s) | 67, 271, 416 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| BseBI | CCWGG | 1 cut(s) | 418 |
| BseDI | CCNNGG | 3 cut(s) | 67, 271, 416 |
| BseGI | GGATG | 2 cut(s) | 60, 213 |
| BseMII | CTCAG | 2 cut(s) | 172, 453 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BsePI | GCGCGC | 1 cut(s) | 115 |
| BseRI | GAGGAG | 3 cut(s) | 321, 324, 369 |
| BseSI | GKGCMC | 1 cut(s) | 31 |
| Bsh1236I | CGCG | 1 cut(s) | 117 |
| BshFI | GGCC | 3 cut(s) | 150, 276, 421 |
| BsiHKAI | GWGCWC | 2 cut(s) | 31, 460 |
| BsnI | GGCC | 3 cut(s) | 150, 276, 421 |
| Bsp1286I | GDGCHC | 2 cut(s) | 31, 460 |
| BspACI | CCGC | 1 cut(s) | 412 |
| BspANI | GGCC | 3 cut(s) | 150, 276, 421 |
| BspCNI | CTCAG | 2 cut(s) | 171, 454 |
| BspFNI | CGCG | 1 cut(s) | 117 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssECI | CCNNGG | 3 cut(s) | 67, 271, 416 |
| BssHII | GCGCGC | 1 cut(s) | 115 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 1 cut(s) | 418 |
| Bst6I | CTCTTC | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 2 cut(s) | 158, 462 |
| BstDSI | CCRYGG | 1 cut(s) | 271 |
| BstF5I | GGATG | 2 cut(s) | 60, 213 |
| BstFNI | CGCG | 1 cut(s) | 117 |
| BstHHI | GCGC | 2 cut(s) | 117, 119 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 236 |
| BstNI | CCWGG | 1 cut(s) | 418 |
| BstSCI | CCNGG | 1 cut(s) | 416 |
| BstSLI | GKGCMC | 1 cut(s) | 31 |
| BstUI | CGCG | 1 cut(s) | 117 |
| BsuRI | GGCC | 3 cut(s) | 150, 276, 421 |
| BtgI | CCRYGG | 1 cut(s) | 271 |
| BtsCI | GGATG | 2 cut(s) | 60, 213 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 1 cut(s) | 117 |
| CfoI | GCGC | 2 cut(s) | 117, 119 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 253, 288 |
| CviAII | CATG | 4 cut(s) | 80, 146, 164, 227 |
| CviJI | RGCY | 8 cut(s) | 17, 134, 142, 150, 162, 276, 421, 458 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 134, 142, 150, 162, 276, 421, 458 |
| DdeI | CTNAG | 2 cut(s) | 158, 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 366 |
| EarI | CTCTTC | 1 cut(s) | 366 |
| Ecl136II | GAGCTC | 1 cut(s) | 458 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| Eco147I | AGGCCT | 1 cut(s) | 421 |
| Eco24I | GRGCYC | 1 cut(s) | 460 |
| Eco53kI | GAGCTC | 1 cut(s) | 458 |
| EcoICRI | GAGCTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 1 cut(s) | 416 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 460 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| FaeI | CATG | 4 cut(s) | 83, 149, 167, 230 |
| FaiI | YATR | 7 cut(s) | 44, 81, 87, 147, 165, 228, 342 |
| FatI | CATG | 4 cut(s) | 79, 145, 163, 226 |
| FokI | GGATG | 2 cut(s) | 47, 200 |
| FriOI | GRGCYC | 1 cut(s) | 460 |
| GlaI | GCGC | 2 cut(s) | 116, 118 |
| HaeIII | GGCC | 3 cut(s) | 150, 276, 421 |
| HhaI | GCGC | 2 cut(s) | 117, 119 |
| Hin1II | CATG | 4 cut(s) | 83, 149, 167, 230 |
| Hin6I | GCGC | 2 cut(s) | 115, 117 |
| HinP1I | GCGC | 2 cut(s) | 115, 117 |
| HindIII | AAGCTT | 1 cut(s) | 140 |
| HinfI | GANTC | 3 cut(s) | 8, 72, 89 |
| Hpy166II | GTNNAC | 2 cut(s) | 29, 440 |
| Hpy188I | TCNGA | 1 cut(s) | 432 |
| Hpy188III | TCNNGA | 1 cut(s) | 461 |
| Hpy8I | GTNNAC | 2 cut(s) | 29, 440 |
| HpyAV | CCTTC | 2 cut(s) | 161, 413 |
| HpyCH4V | TGCA | 1 cut(s) | 29 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 236 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 462 |
| Hsp92II | CATG | 4 cut(s) | 83, 149, 167, 230 |
| HspAI | GCGC | 2 cut(s) | 115, 117 |
| LmnI | GCTCC | 3 cut(s) | 178, 334, 463 |
| LpnPI | CCDG | 7 cut(s) | 9, 138, 265, 360, 403, 430, 474 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MboII | GAAGA | 1 cut(s) | 353 |
| MhlI | GDGCHC | 2 cut(s) | 31, 460 |
| MlyI | GAGTC | 2 cut(s) | 2, 66 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 134 |
| MspR9I | CCNGG | 1 cut(s) | 418 |
| MvaI | CCWGG | 1 cut(s) | 418 |
| MvnI | CGCG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 236 |
| NlaIII | CATG | 4 cut(s) | 83, 149, 167, 230 |
| NmuCI | GTSAC | 1 cut(s) | 5 |
| PauI | GCGCGC | 1 cut(s) | 115 |
| PceI | AGGCCT | 1 cut(s) | 421 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PleI | GAGTC | 2 cut(s) | 2, 66 |
| PpsI | GAGTC | 2 cut(s) | 2, 66 |
| Psp124BI | GAGCTC | 1 cut(s) | 460 |
| Psp6I | CCWGG | 1 cut(s) | 416 |
| PspGI | CCWGG | 1 cut(s) | 416 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PteI | GCGCGC | 1 cut(s) | 115 |
| PvuII | CAGCTG | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SacI | GAGCTC | 1 cut(s) | 460 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 2 cut(s) | 2, 66 |
| ScrFI | CCNGG | 1 cut(s) | 418 |
| SduI | GDGCHC | 2 cut(s) | 31, 460 |
| SetI | ASST | 8 cut(s) | 51, 104, 136, 144, 316, 322, 405, 460 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| SseBI | AGGCCT | 1 cut(s) | 421 |
| SsiI | CCGC | 1 cut(s) | 412 |
| SstI | GAGCTC | 1 cut(s) | 460 |
| StuI | AGGCCT | 1 cut(s) | 421 |
| StyD4I | CCNGG | 1 cut(s) | 416 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaqI | TCGA | 1 cut(s) | 171 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TseFI | GTSAC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 4 cut(s) | 102, 134, 180, 461 |
| TspGWI | ACGGA | 1 cut(s) | 98 |
| TspRI | CASTG | 1 cut(s) | 132 |
| VneI | GTGCAC | 1 cut(s) | 27 |