FvH4_5g03532

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000034
Physical Location & Seq
Reverse (-)
2080724 .. 2083185
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03532.t1

Sequence Viewer

Length: 1308 bp
ATGGATTCTTCAAGGTTTTTCCTTTCGTCGTATAAAGCCTGGTATGTTGAAGATCAGAAGATTGTTAGCATTCTTACTACCTCTCTCACCGAACCCGTTGCTCGTATTTGTCTTGGAGAGACAACATCCAAAGGAATTTGGGACTGCCTTGCTAATTTCTTCAACCAAAAATCTGCTGCCAATGCTACAAACTTGAAACTTCAACTGTATGAGCTTCAAAAAGGGACCCAATATGTTGATGCTTACCTCCAACATGCCAGGTCGATTGCTGATGCTCTTGCCTCCATTAATCAGCGAGTCTCTGACGCCGATCTGGTAACTGCTACTCTCCATGGTCTTGGTTCTGATTATCTATTGCTTCGAACTGCCTTGTCACAGACCACTCTCCCCAGCTTCTCTGATCTTCGCGCTCGGATCTTGGCTTTTGAGGCGCAGCAACCACCGTCGGCAGCTTTACGAACTGCCACTACCCTTTTCAACAATGGCGGTTCTTCCTCCAATCGAACTGGTCGCCGTCCGTATTCTGGTAACGGTGGTGCAGGCCGAAATTCCGGCAAGAATCGCCGAAACAATGGAAATAATGGGCAGCCCTCTTATCGCTATGGCACCACTTCTCAACAGGCCTATCAACCTCAATTTCAACCTTATATGGGCTACTCTCCACCCAATCCTTGGGCCCAGTCGCTGTTCAGGCCTGCCTCCCAACCAAGCCTTCTTAGCCCTGCTCCAGGTCAACCATGGTGGCCCACATGCATGTCCTCTCTTCATGGGCCTACTCAATGCCCTCATCGGTTTCAAGGGCCTAACACAGTTCGACCACTTGCCGGCGCTCATTTTACTCAACCCGATGATCCTTTTTGGTACCCCGACACTGATGCTACTCACCACATGACTTCTATGCCGGACCCATGTAAAGATGGTCTTTATCCTCTTCCAGTTTCCAGTACTTCTTCTAAGGCTCCTCATGCTCTAGGTCCTCTTGAATTTGTGCACCTCACATCCACTGTTTTGGCCCAACCGTCCAGGTCCAATCCTCCACCACATCAGCCCAATCCTACAACTACTCATTCTCCTGCCGAACCAACTCACCTTGATTCCTCACCTCTTCTTCTAACCCAAACACTCACCCCCGCTCCATTTCCACCAGAAATCACCATTCCCAATCCCCCACCACTTCCCGCCCCACCATCCGTGCGCGTCTACCAACGACGCGCCACCAACCCGTCACCACCACCACACTCCGATCCTCCTCTGTCATCCTCTGTTCCCTCTGCCACATCCGGATGCGCCGTCGGTGTTTTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

436

Amino Acids

47.07

Weight (kDa)

8.98

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 10 - 145 7.2e-14 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 861
AccB1I GGYRCC 2 cut(s) 605, 861
AccB7I CCANNNNNTGG 1 cut(s) 672
AccBSI CCGCTC 1 cut(s) 1133
AccI GTMKAC 1 cut(s) 1200
AccII CGCG 3 cut(s) 408, 1197, 1212
AccIII TCCGGA 1 cut(s) 1280
AciI CCGC 3 cut(s) 486, 1131, 1179
AclWI GGATC 3 cut(s) 422, 845, 1238
AcsI RAATTY 3 cut(s) 135, 547, 983
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 863, 946
AfiI CCNNNNNNNGG 5 cut(s) 524, 650, 672, 728, 824
AjnI CCWGG 4 cut(s) 38, 257, 727, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 3 cut(s) 214, 393, 452
AluI AGCT 3 cut(s) 214, 393, 452
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 2 cut(s) 113, 304
Alw44I GTGCAC 1 cut(s) 989
AlwI GGATC 3 cut(s) 422, 845, 1238
AlwNI CAGNNNCTG 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 1280
AoxI GGCC 8 cut(s) 541, 621, 675, 692, 743, 770, 800, 1011
ApaI GGGCCC 1 cut(s) 679
ApaLI GTGCAC 1 cut(s) 989
ApeKI GCWGC 4 cut(s) 176, 433, 449, 586
ApoI RAATTY 3 cut(s) 135, 547, 983
AseI ATTAAT 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 861
AspLEI GCGC 6 cut(s) 410, 433, 830, 1197, 1214, 1289
AsuHPI GGTGA 7 cut(s) 79, 875, 1079, 1092, 1117, 1144, 1218
AsuII TTCGAA 1 cut(s) 361
AvaII GGWCC 4 cut(s) 225, 904, 974, 1026
BaeGI GKGCMC 2 cut(s) 679, 993
BanI GGYRCC 2 cut(s) 605, 861
BanII GRGCYC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 4 cut(s) 163, 445, 461, 598
BccI CCATC 2 cut(s) 911, 1195
BceAI ACGGC 2 cut(s) 498, 1274
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 857, 891
BciT130I CCWGG 4 cut(s) 40, 259, 729, 1024
BcoDI GTCTC 2 cut(s) 113, 304
BfaI CTAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 831
BisI GCNGC 4 cut(s) 177, 434, 450, 587
BlsI GCNGC 4 cut(s) 178, 435, 451, 588
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 4 cut(s) 40, 259, 729, 1024
Bme18I GGWCC 4 cut(s) 225, 904, 974, 1026
BmiI GGNNCC 7 cut(s) 226, 227, 607, 677, 863, 906, 960
BmrFI CCNGG 4 cut(s) 40, 259, 729, 1024
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 4 cut(s) 229, 262, 865, 1274
BmuI ACTGGG 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 711
Bpu14I TTCGAA 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 331, 671, 737
BsaWI WCCGGW 1 cut(s) 1280
BsaXI ACNNNNNCTCC 4 cut(s) 1054, 1084, 1117, 1147
Bsc4I CCNNNNNNNGG 5 cut(s) 524, 650, 672, 728, 824
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 4 cut(s) 511, 679, 935, 942
BseAI TCCGGA 1 cut(s) 1280
BseBI CCWGG 4 cut(s) 40, 259, 729, 1024
BseDI CCNNGG 3 cut(s) 331, 671, 737
BseGI GGATG 6 cut(s) 125, 998, 1187, 1256, 1277, 1289
BseLI CCNNNNNNNGG 5 cut(s) 524, 650, 672, 728, 824
BseNI ACTGG 4 cut(s) 511, 679, 935, 942
BseRI GAGGAG 2 cut(s) 951, 1239
BseSI GKGCMC 2 cut(s) 679, 993
BseXI GCAGC 4 cut(s) 163, 445, 461, 598
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 3 cut(s) 408, 1197, 1212
BshFI GGCC 8 cut(s) 543, 623, 677, 694, 745, 772, 802, 1013
BshNI GGYRCC 2 cut(s) 605, 861
BsiHKAI GWGCWC 1 cut(s) 993
BsiSI CCGG 4 cut(s) 552, 825, 902, 1281
BslFI GGGAC 2 cut(s) 155, 238
BslI CCNNNNNNNGG 5 cut(s) 524, 650, 672, 728, 824
BsmAI GTCTC 2 cut(s) 113, 304
BsmFI GGGAC 2 cut(s) 155, 238
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 8 cut(s) 543, 623, 677, 694, 745, 772, 802, 1013
Bsp119I TTCGAA 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 675
Bsp1286I GDGCHC 2 cut(s) 679, 993
Bsp13I TCCGGA 1 cut(s) 1280
Bsp143I GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
Bsp19I CCATGG 2 cut(s) 331, 737
BspACI CCGC 3 cut(s) 486, 1131, 1179
BspANI GGCC 8 cut(s) 543, 623, 677, 694, 745, 772, 802, 1013
BspEI TCCGGA 1 cut(s) 1280
BspFNI CGCG 3 cut(s) 408, 1197, 1212
BspLI GGNNCC 7 cut(s) 226, 227, 607, 677, 863, 906, 960
BspPI GGATC 3 cut(s) 422, 845, 1238
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 605, 861
BsrBI CCGCTC 1 cut(s) 1133
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 4 cut(s) 511, 679, 935, 942
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 3 cut(s) 331, 671, 737
BssMI GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 3 cut(s) 331, 671, 737
Bst2UI CCWGG 4 cut(s) 40, 259, 729, 1024
Bst4CI ACNGT 6 cut(s) 207, 444, 533, 811, 1006, 1020
Bst6I CTCTTC 3 cut(s) 768, 936, 1110
BstACI GRCGYC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 541, 696, 826
BstDEI CTNAG 2 cut(s) 716, 954
BstDSI CCRYGG 2 cut(s) 331, 737
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 6 cut(s) 125, 998, 1187, 1256, 1277, 1289
BstFNI CGCG 3 cut(s) 408, 1197, 1212
BstH2I RGCGCY 1 cut(s) 831
BstHHI GCGC 6 cut(s) 410, 433, 830, 1197, 1214, 1289
BstKTI GATC 6 cut(s) 55, 313, 403, 417, 853, 1246
BstMAI GTCTC 2 cut(s) 113, 304
BstMBI GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
BstMWI GCNNNNNNNGC 6 cut(s) 182, 428, 561, 691, 717, 965
BstNI CCWGG 4 cut(s) 40, 259, 729, 1024
BstNSI RCATGY 3 cut(s) 257, 753, 757
BstSCI CCNGG 4 cut(s) 38, 257, 727, 1022
BstSLI GKGCMC 2 cut(s) 679, 993
BstUI CGCG 3 cut(s) 408, 1197, 1212
BstV1I GCAGC 4 cut(s) 163, 445, 461, 598
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 2 cut(s) 338, 1009
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 8 cut(s) 543, 623, 677, 694, 745, 772, 802, 1013
BtgI CCRYGG 2 cut(s) 331, 737
BtsCI GGATG 6 cut(s) 125, 998, 1187, 1256, 1277, 1289
BtsIMutI CAGTG 2 cut(s) 870, 1002
Cac8I GCNNGC 3 cut(s) 541, 696, 826
CaiI CAGNNNCTG 1 cut(s) 685
CfoI GCGC 6 cut(s) 410, 433, 830, 1197, 1214, 1289
Cfr10I RCCGGY 1 cut(s) 824
CseI GACGC 3 cut(s) 314, 1186, 1218
Csp6I GTAC 2 cut(s) 862, 945
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CviAII CATG 9 cut(s) 254, 332, 738, 750, 754, 767, 889, 909, 965
CviQI GTAC 2 cut(s) 862, 945
DdeI CTNAG 2 cut(s) 716, 954
DpnI GATC 6 cut(s) 54, 312, 402, 416, 852, 1245
DpnII GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
Eam1104I CTCTTC 3 cut(s) 768, 936, 1110
EarI CTCTTC 3 cut(s) 768, 936, 1110
Eco130I CCWWGG 3 cut(s) 331, 671, 737
Eco147I AGGCCT 2 cut(s) 623, 694
Eco24I GRGCYC 1 cut(s) 679
Eco47I GGWCC 4 cut(s) 225, 904, 974, 1026
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoO109I RGGNCCY 3 cut(s) 225, 800, 974
EcoRII CCWGG 4 cut(s) 38, 257, 727, 1022
EcoT14I CCWWGG 3 cut(s) 331, 671, 737
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 679
ErhI CCWWGG 3 cut(s) 331, 671, 737
FaeI CATG 9 cut(s) 257, 335, 741, 753, 757, 770, 892, 912, 968
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 2 cut(s) 155, 238
FatI CATG 9 cut(s) 253, 331, 737, 749, 753, 766, 888, 908, 964
FauI CCCGC 2 cut(s) 1138, 1186
FblI GTMKAC 1 cut(s) 1200
Fnu4HI GCNGC 4 cut(s) 177, 434, 450, 587
FokI GGATG 6 cut(s) 112, 985, 1174, 1243, 1264, 1296
FriOI GRGCYC 1 cut(s) 679
Fsp4HI GCNGC 4 cut(s) 177, 434, 450, 587
FspBI CTAG 1 cut(s) 971
GlaI GCGC 6 cut(s) 409, 432, 829, 1196, 1213, 1288
GluI GCNGC 4 cut(s) 177, 434, 450, 587
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 831
HaeIII GGCC 8 cut(s) 543, 623, 677, 694, 745, 772, 802, 1013
HapII CCGG 4 cut(s) 552, 825, 902, 1281
HgaI GACGC 3 cut(s) 314, 1186, 1218
HhaI GCGC 6 cut(s) 410, 433, 830, 1197, 1214, 1289
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 9 cut(s) 257, 335, 741, 753, 757, 770, 892, 912, 968
Hin6I GCGC 6 cut(s) 408, 431, 828, 1195, 1212, 1287
HinP1I GCGC 6 cut(s) 408, 431, 828, 1195, 1212, 1287
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HinfI GANTC 4 cut(s) 5, 297, 559, 1094
HpaII CCGG 4 cut(s) 552, 825, 902, 1281
HphI GGTGA 7 cut(s) 79, 875, 1079, 1092, 1117, 1144, 1218
Hpy166II GTNNAC 3 cut(s) 734, 991, 1201
Hpy188I TCNGA 6 cut(s) 57, 304, 346, 400, 414, 1243
Hpy188III TCNNGA 2 cut(s) 980, 1281
Hpy8I GTNNAC 3 cut(s) 734, 991, 1201
Hpy99I CGWCG 4 cut(s) 31, 448, 1212, 1295
HpyAV CCTTC 1 cut(s) 722
HpyCH4III ACNGT 6 cut(s) 207, 444, 533, 811, 1006, 1020
HpyCH4V TGCA 3 cut(s) 539, 753, 991
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 428, 561, 691, 717, 965
HpyF3I CTNAG 2 cut(s) 716, 954
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 9 cut(s) 257, 335, 741, 753, 757, 770, 892, 912, 968
HspAI GCGC 6 cut(s) 408, 431, 828, 1195, 1212, 1287
KflI GGGWCCC 1 cut(s) 225
Kpn2I TCCGGA 1 cut(s) 1280
KpnI GGTACC 1 cut(s) 865
KroI GCCGGC 1 cut(s) 824
KroNI GCCGGC 1 cut(s) 826
Kzo9I GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
LmnI GCTCC 3 cut(s) 730, 964, 1138
Lsp1109I GCAGC 4 cut(s) 163, 445, 461, 598
LweI GCATC 4 cut(s) 229, 262, 865, 1274
MaeI CTAG 1 cut(s) 971
MaeIII GTNAC 4 cut(s) 316, 372, 527, 1224
MalI GATC 6 cut(s) 54, 312, 402, 416, 852, 1245
MbiI CCGCTC 1 cut(s) 1133
MboI GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 679, 993
MluCI AATT 5 cut(s) 135, 154, 547, 635, 983
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 755
MroI TCCGGA 1 cut(s) 1280
MroNI GCCGGC 1 cut(s) 824
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 752, 1282
MspI CCGG 4 cut(s) 552, 825, 902, 1281
MspR9I CCNGG 4 cut(s) 40, 259, 729, 1024
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 4 cut(s) 40, 259, 729, 1024
MvnI CGCG 3 cut(s) 408, 1197, 1212
MwoI GCNNNNNNNGC 6 cut(s) 182, 428, 561, 691, 717, 965
NaeI GCCGGC 1 cut(s) 826
NcoI CCATGG 2 cut(s) 331, 737
NdeII GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
NgoMIV GCCGGC 1 cut(s) 824
NlaIII CATG 9 cut(s) 257, 335, 741, 753, 757, 770, 892, 912, 968
NlaIV GGNNCC 7 cut(s) 226, 227, 607, 677, 863, 906, 960
NmuCI GTSAC 2 cut(s) 372, 1224
NsiI ATGCAT 1 cut(s) 755
NspI RCATGY 3 cut(s) 257, 753, 757
NspV TTCGAA 1 cut(s) 361
PceI AGGCCT 2 cut(s) 623, 694
PctI GAATGC 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 826
PfeI GAWTC 3 cut(s) 5, 559, 1094
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 4 cut(s) 178, 435, 451, 588
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PpuMI RGGWCCY 2 cut(s) 225, 974
PshBI ATTAAT 1 cut(s) 288
Psp5II RGGWCCY 2 cut(s) 225, 974
Psp6I CCWGG 4 cut(s) 38, 257, 727, 1022
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 4 cut(s) 38, 257, 727, 1022
PspN4I GGNNCC 7 cut(s) 226, 227, 607, 677, 863, 906, 960
PspOMI GGGCCC 1 cut(s) 675
PspPPI RGGWCCY 2 cut(s) 225, 974
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 2 cut(s) 863, 946
RsaNI GTAC 2 cut(s) 862, 945
RseI CAYNNNNRTG 2 cut(s) 752, 1282
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 177, 434, 450, 587
Sau3AI GATC 6 cut(s) 52, 310, 400, 414, 850, 1243
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 4 cut(s) 40, 259, 729, 1024
SduI GDGCHC 2 cut(s) 679, 993
SfaNI GCATC 4 cut(s) 229, 262, 865, 1274
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 4 cut(s) 225, 904, 974, 1026
SmiMI CAYNNNNRTG 2 cut(s) 752, 1282
Sse9I AATT 5 cut(s) 135, 154, 547, 635, 983
SseBI AGGCCT 2 cut(s) 623, 694
SsiI CCGC 3 cut(s) 486, 1131, 1179
SspMI CTAG 1 cut(s) 971
StuI AGGCCT 2 cut(s) 623, 694
StyD4I CCNGG 4 cut(s) 38, 257, 727, 1022
StyI CCWWGG 3 cut(s) 331, 671, 737
TaaI ACNGT 6 cut(s) 207, 444, 533, 811, 1006, 1020
TaqI TCGA 4 cut(s) 263, 361, 502, 814
TasI AATT 5 cut(s) 135, 154, 547, 635, 983
TatI WGTACW 1 cut(s) 944
TfiI GAWTC 3 cut(s) 5, 559, 1094
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 877, 1009
TseFI GTSAC 2 cut(s) 372, 1224
TseI GCWGC 4 cut(s) 176, 433, 449, 586
Tsp45I GTSAC 2 cut(s) 372, 1224
TspDTI ATGAA 1 cut(s) 755
TspGWI ACGGA 2 cut(s) 507, 1180
TspRI CASTG 2 cut(s) 877, 1009
Van91I CCANNNNNTGG 1 cut(s) 672
VneI GTGCAC 1 cut(s) 989
VpaK11BI GGWCC 4 cut(s) 225, 904, 974, 1026
VspI ATTAAT 1 cut(s) 288
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 3 cut(s) 135, 547, 983
XceI RCATGY 3 cut(s) 257, 753, 757
XcmI CCANNNNNNNNNTGG 2 cut(s) 669, 735
XmiI GTMKAC 1 cut(s) 1200
XspI CTAG 1 cut(s) 971
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.