Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 93 - 137 | 4.3e-08 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 374 |
| AciI | CCGC | 1 cut(s) | 153 |
| AclWI | GGATC | 1 cut(s) | 287 |
| AcoI | YGGCCR | 1 cut(s) | 163 |
| AcsI | RAATTY | 1 cut(s) | 54 |
| AcuI | CTGAAG | 1 cut(s) | 16 |
| AfaI | GTAC | 1 cut(s) | 23 |
| AgsI | TTSAA | 4 cut(s) | 110, 212, 245, 368 |
| AjnI | CCWGG | 1 cut(s) | 67 |
| AluBI | AGCT | 2 cut(s) | 123, 176 |
| AluI | AGCT | 2 cut(s) | 123, 176 |
| AlwI | GGATC | 1 cut(s) | 287 |
| Ama87I | CYCGRG | 1 cut(s) | 289 |
| AoxI | GGCC | 2 cut(s) | 35, 163 |
| ApeKI | GCWGC | 2 cut(s) | 120, 173 |
| ApoI | RAATTY | 1 cut(s) | 54 |
| AsuHPI | GGTGA | 1 cut(s) | 368 |
| AvaI | CYCGRG | 1 cut(s) | 289 |
| BalI | TGGCCA | 1 cut(s) | 165 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 14, 46 |
| BbvI | GCAGC | 2 cut(s) | 132, 185 |
| BccI | CCATC | 2 cut(s) | 347, 404 |
| BciT130I | CCWGG | 1 cut(s) | 69 |
| BclI | TGATCA | 1 cut(s) | 358 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BfuAI | ACCTGC | 1 cut(s) | 374 |
| BisI | GCNGC | 2 cut(s) | 121, 174 |
| BlsI | GCNGC | 2 cut(s) | 122, 175 |
| Bme1390I | CCNGG | 1 cut(s) | 69 |
| BmeT110I | CYCGRG | 1 cut(s) | 289 |
| BmiI | GGNNCC | 1 cut(s) | 295 |
| BmrFI | CCNGG | 1 cut(s) | 69 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| Bse1I | ACTGG | 1 cut(s) | 166 |
| Bse3DI | GCAATG | 1 cut(s) | 178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 357 |
| BseBI | CCWGG | 1 cut(s) | 69 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseGI | GGATG | 3 cut(s) | 318, 341, 415 |
| BseJI | GATNNNNATC | 1 cut(s) | 357 |
| BseMI | GCAATG | 1 cut(s) | 178 |
| BseNI | ACTGG | 1 cut(s) | 166 |
| BseXI | GCAGC | 2 cut(s) | 132, 185 |
| BsgI | GTGCAG | 1 cut(s) | 402 |
| BshFI | GGCC | 2 cut(s) | 37, 165 |
| BsiHKCI | CYCGRG | 1 cut(s) | 289 |
| BsnI | GGCC | 2 cut(s) | 37, 165 |
| BsoBI | CYCGRG | 1 cut(s) | 289 |
| Bsp143I | GATC | 2 cut(s) | 279, 358 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspANI | GGCC | 2 cut(s) | 37, 165 |
| BspLI | GGNNCC | 1 cut(s) | 295 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BspMI | ACCTGC | 1 cut(s) | 374 |
| BspPI | GGATC | 1 cut(s) | 287 |
| BspQI | GCTCTTC | 1 cut(s) | 130 |
| BsrDI | GCAATG | 1 cut(s) | 178 |
| BsrI | ACTGG | 1 cut(s) | 166 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssMI | GATC | 2 cut(s) | 279, 358 |
| Bst2UI | CCWGG | 1 cut(s) | 69 |
| Bst6I | CTCTTC | 2 cut(s) | 130, 259 |
| BstC8I | GCNNGC | 1 cut(s) | 92 |
| BstF5I | GGATG | 3 cut(s) | 318, 341, 415 |
| BstKTI | GATC | 2 cut(s) | 282, 361 |
| BstMBI | GATC | 2 cut(s) | 279, 358 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 120 |
| BstNI | CCWGG | 1 cut(s) | 69 |
| BstSCI | CCNGG | 1 cut(s) | 67 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BstV1I | GCAGC | 2 cut(s) | 132, 185 |
| BsuRI | GGCC | 2 cut(s) | 37, 165 |
| BtsCI | GGATG | 3 cut(s) | 318, 341, 415 |
| BtsI | GCAGTG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 3 cut(s) | 168, 282, 348 |
| BveI | ACCTGC | 1 cut(s) | 374 |
| Cac8I | GCNNGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 22 |
| CviAII | CATG | 2 cut(s) | 229, 307 |
| CviJI | RGCY | 9 cut(s) | 9, 30, 37, 114, 123, 165, 176, 227, 296 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 30, 37, 114, 123, 165, 176, 227, 296 |
| CviQI | GTAC | 1 cut(s) | 22 |
| DpnI | GATC | 2 cut(s) | 281, 360 |
| DpnII | GATC | 2 cut(s) | 279, 358 |
| EaeI | YGGCCR | 1 cut(s) | 163 |
| Eam1104I | CTCTTC | 2 cut(s) | 130, 259 |
| EarI | CTCTTC | 2 cut(s) | 130, 259 |
| Eco147I | AGGCCT | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 16 |
| Eco88I | CYCGRG | 1 cut(s) | 289 |
| EcoRII | CCWGG | 1 cut(s) | 67 |
| FaeI | CATG | 2 cut(s) | 232, 310 |
| FaiI | YATR | 7 cut(s) | 117, 222, 230, 270, 277, 308, 402 |
| FatI | CATG | 2 cut(s) | 228, 306 |
| FbaI | TGATCA | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 2 cut(s) | 121, 174 |
| FokI | GGATG | 3 cut(s) | 305, 328, 422 |
| Fsp4HI | GCNGC | 2 cut(s) | 121, 174 |
| GluI | GCNGC | 2 cut(s) | 121, 174 |
| HaeIII | GGCC | 2 cut(s) | 37, 165 |
| Hin1II | CATG | 2 cut(s) | 232, 310 |
| HincII | GTYRAC | 2 cut(s) | 146, 218 |
| HindII | GTYRAC | 2 cut(s) | 146, 218 |
| HinfI | GANTC | 3 cut(s) | 106, 194, 287 |
| HphI | GGTGA | 1 cut(s) | 368 |
| Hpy166II | GTNNAC | 2 cut(s) | 146, 218 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 316 |
| Hpy188III | TCNNGA | 2 cut(s) | 137, 291 |
| Hpy8I | GTNNAC | 2 cut(s) | 146, 218 |
| HpyAV | CCTTC | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 173, 383 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 120 |
| Hsp92II | CATG | 2 cut(s) | 232, 310 |
| Ksp22I | TGATCA | 1 cut(s) | 358 |
| Kzo9I | GATC | 2 cut(s) | 279, 358 |
| LguI | GCTCTTC | 1 cut(s) | 130 |
| LmnI | GCTCC | 2 cut(s) | 265, 293 |
| LpnPI | CCDG | 8 cut(s) | 19, 54, 76, 81, 147, 150, 200, 369 |
| Lsp1109I | GCAGC | 2 cut(s) | 132, 185 |
| LweI | GCATC | 1 cut(s) | 103 |
| MaeIII | GTNAC | 1 cut(s) | 337 |
| MalI | GATC | 2 cut(s) | 281, 360 |
| MboI | GATC | 2 cut(s) | 279, 358 |
| MboII | GAAGA | 3 cut(s) | 117, 120, 246 |
| MlsI | TGGCCA | 1 cut(s) | 165 |
| MluCI | AATT | 1 cut(s) | 54 |
| MluNI | TGGCCA | 1 cut(s) | 165 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MmeI | TCCRAC | 1 cut(s) | 352 |
| MnlI | CCTC | 3 cut(s) | 48, 214, 307 |
| Mox20I | TGGCCA | 1 cut(s) | 165 |
| MscI | TGGCCA | 1 cut(s) | 165 |
| MseI | TTAA | 1 cut(s) | 396 |
| Msp20I | TGGCCA | 1 cut(s) | 165 |
| MspR9I | CCNGG | 1 cut(s) | 69 |
| MvaI | CCWGG | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 120 |
| NdeII | GATC | 2 cut(s) | 279, 358 |
| NlaIII | CATG | 2 cut(s) | 232, 310 |
| NlaIV | GGNNCC | 1 cut(s) | 295 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| PceI | AGGCCT | 1 cut(s) | 37 |
| PciSI | GCTCTTC | 1 cut(s) | 130 |
| PfeI | GAWTC | 2 cut(s) | 106, 194 |
| PkrI | GCNGC | 2 cut(s) | 122, 175 |
| PleI | GAGTC | 1 cut(s) | 281 |
| PpsI | GAGTC | 1 cut(s) | 281 |
| Psp6I | CCWGG | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 1 cut(s) | 295 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| RsaI | GTAC | 1 cut(s) | 23 |
| RsaNI | GTAC | 1 cut(s) | 22 |
| SapI | GCTCTTC | 1 cut(s) | 130 |
| SaqAI | TTAA | 1 cut(s) | 396 |
| SatI | GCNGC | 2 cut(s) | 121, 174 |
| Sau3AI | GATC | 2 cut(s) | 279, 358 |
| SchI | GAGTC | 1 cut(s) | 281 |
| ScrFI | CCNGG | 1 cut(s) | 69 |
| SetI | ASST | 4 cut(s) | 125, 178, 217, 388 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| Sse9I | AATT | 1 cut(s) | 54 |
| SseBI | AGGCCT | 1 cut(s) | 37 |
| SsiI | CCGC | 1 cut(s) | 153 |
| StuI | AGGCCT | 1 cut(s) | 37 |
| StyD4I | CCNGG | 1 cut(s) | 67 |
| TasI | AATT | 1 cut(s) | 54 |
| TfiI | GAWTC | 2 cut(s) | 106, 194 |
| Tru1I | TTAA | 1 cut(s) | 396 |
| Tru9I | TTAA | 1 cut(s) | 396 |
| TscAI | CASTG | 3 cut(s) | 175, 289, 355 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| TseI | GCWGC | 2 cut(s) | 120, 173 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspRI | CASTG | 3 cut(s) | 175, 289, 355 |
| XapI | RAATTY | 1 cut(s) | 54 |