Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 25 - 63 | 7.2e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 11 |
| AccIII | TCCGGA | 1 cut(s) | 184 |
| AciI | CCGC | 2 cut(s) | 6, 9 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcyI | GRCGYC | 1 cut(s) | 41 |
| AgsI | TTSAA | 1 cut(s) | 139 |
| AjnI | CCWGG | 1 cut(s) | 110 |
| AluBI | AGCT | 1 cut(s) | 143 |
| AluI | AGCT | 1 cut(s) | 143 |
| Alw26I | GTCTC | 1 cut(s) | 21 |
| Aor13HI | TCCGGA | 1 cut(s) | 184 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AspA2I | CCTAGG | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| AvrII | CCTAGG | 1 cut(s) | 154 |
| BccI | CCATC | 3 cut(s) | 71, 182, 189 |
| BciT130I | CCWGG | 1 cut(s) | 112 |
| BcoDI | GTCTC | 1 cut(s) | 21 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BisI | GCNGC | 1 cut(s) | 9 |
| BlnI | CCTAGG | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 10 |
| Bme1390I | CCNGG | 1 cut(s) | 112 |
| BmrFI | CCNGG | 1 cut(s) | 112 |
| Bsa29I | ATCGAT | 1 cut(s) | 193 |
| BsaHI | GRCGYC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| BsaWI | WCCGGW | 1 cut(s) | 184 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 25 |
| BseAI | TCCGGA | 1 cut(s) | 184 |
| BseBI | CCWGG | 1 cut(s) | 112 |
| BseCI | ATCGAT | 1 cut(s) | 193 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseRI | GAGGAG | 1 cut(s) | 85 |
| BshVI | ATCGAT | 1 cut(s) | 193 |
| BsiSI | CCGG | 2 cut(s) | 44, 185 |
| BsmAI | GTCTC | 1 cut(s) | 21 |
| BsmBI | CGTCTC | 1 cut(s) | 21 |
| Bsp13I | TCCGGA | 1 cut(s) | 184 |
| BspACI | CCGC | 2 cut(s) | 6, 9 |
| BspDI | ATCGAT | 1 cut(s) | 193 |
| BspEI | TCCGGA | 1 cut(s) | 184 |
| BsrBI | CCGCTC | 1 cut(s) | 11 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssNI | GRCGYC | 1 cut(s) | 41 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst2UI | CCWGG | 1 cut(s) | 112 |
| BstACI | GRCGYC | 1 cut(s) | 41 |
| BstDEI | CTNAG | 1 cut(s) | 36 |
| BstMAI | GTCTC | 1 cut(s) | 21 |
| BstNI | CCWGG | 1 cut(s) | 112 |
| BstSCI | CCNGG | 1 cut(s) | 110 |
| Bsu15I | ATCGAT | 1 cut(s) | 193 |
| BsuTUI | ATCGAT | 1 cut(s) | 193 |
| ClaI | ATCGAT | 1 cut(s) | 193 |
| CseI | GACGC | 1 cut(s) | 49 |
| CviJI | RGCY | 3 cut(s) | 143, 159, 199 |
| CviKI_1 | RGCY | 3 cut(s) | 143, 159, 199 |
| DdeI | CTNAG | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 110 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 1 cut(s) | 21 |
| FaiI | YATR | 4 cut(s) | 77, 83, 122, 134 |
| Fnu4HI | GCNGC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 9 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 9 |
| HapII | CCGG | 2 cut(s) | 44, 185 |
| HgaI | GACGC | 1 cut(s) | 49 |
| Hin1I | GRCGYC | 1 cut(s) | 41 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HinfI | GANTC | 2 cut(s) | 87, 190 |
| HpaII | CCGG | 2 cut(s) | 44, 185 |
| HphI | GGTGA | 1 cut(s) | 97 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 28 |
| Hpy188III | TCNNGA | 1 cut(s) | 185 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 162 |
| HpyF3I | CTNAG | 1 cut(s) | 36 |
| HpySE526I | ACGT | 2 cut(s) | 48, 162 |
| Hsp92I | GRCGYC | 1 cut(s) | 41 |
| Kpn2I | TCCGGA | 1 cut(s) | 184 |
| LmnI | GCTCC | 2 cut(s) | 16, 176 |
| LpnPI | CCDG | 4 cut(s) | 57, 97, 124, 198 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeII | ACGT | 2 cut(s) | 48, 162 |
| MbiI | CCGCTC | 1 cut(s) | 11 |
| MluCI | AATT | 1 cut(s) | 116 |
| MlyI | GAGTC | 1 cut(s) | 81 |
| MmeI | TCCRAC | 3 cut(s) | 44, 51, 123 |
| MnlI | CCTC | 4 cut(s) | 34, 70, 106, 192 |
| MroI | TCCGGA | 1 cut(s) | 184 |
| MspI | CCGG | 2 cut(s) | 44, 185 |
| MspR9I | CCNGG | 1 cut(s) | 112 |
| MvaI | CCWGG | 1 cut(s) | 112 |
| PfeI | GAWTC | 1 cut(s) | 190 |
| PkrI | GCNGC | 1 cut(s) | 10 |
| PleI | GAGTC | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 81 |
| Psp6I | CCWGG | 1 cut(s) | 110 |
| PspGI | CCWGG | 1 cut(s) | 110 |
| SatI | GCNGC | 1 cut(s) | 9 |
| SchI | GAGTC | 1 cut(s) | 81 |
| ScrFI | CCNGG | 1 cut(s) | 112 |
| SetI | ASST | 5 cut(s) | 26, 51, 113, 145, 165 |
| SgeI | CNNG | 6 cut(s) | 56, 123, 124, 167, 190, 197 |
| Sse9I | AATT | 1 cut(s) | 116 |
| SsiI | CCGC | 2 cut(s) | 6, 9 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 1 cut(s) | 110 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaiI | ACGT | 2 cut(s) | 51, 165 |
| TaqI | TCGA | 1 cut(s) | 193 |
| TasI | AATT | 1 cut(s) | 116 |
| TauI | GCSGC | 1 cut(s) | 11 |
| TfiI | GAWTC | 1 cut(s) | 190 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XmaJI | CCTAGG | 1 cut(s) | 154 |
| XspI | CTAG | 1 cut(s) | 155 |